SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2991

Length: 2312 nt

UniGene Fasta

>sp_v3.0_unigene2991
GAAAGAAGGGGCGAGGTAAACCAGACAGGTCCTTGTCATGTGGCCCATGATGACAAATACATTTCTGAGAAATTGACAATGTCCCCCACCACATTAGGGCGGGAGGTTGGGCCGTGATGTACAAGCAGGCAGAATGGTAGAAATTATCAGGTAACACAGATCGGTGGGCTTTCCTTCCACTCTGTATATTCGCCCTGGTGGTCCGCTGCCCTGGGTTTAAGATAATATACCTTCCGTATATATTATCCATGGCTACTGCATCAATGCAGCCTGAATTAAAAGGCGTGGTCATAATTTCCTTGCCCCCTCCAGACAACCCAAATGAAGGAAAAACTGTGTGTGCAGCTTTTACGGTTAGAGGAGGAGGAGGAGGAGGGGGTGCAGTTCAGCAGCAGCAGCAGCAGCAGCAAATACCCAATCCAAATCCCAGGAGGCCCTTTCTCAGCAGGAGGAGGGCGCGTTTGAGGAAGGCCACTGCTATCTTGTTTGTGTCTGCACTGGCCCTGGCAATCTGGTATTGGACGCCTGATTCTGGATTTGATAACAGTCCCAACGAGGATGATGATGACAGTAAAGTGGGCGTGTATACTCTGTATCCAAAGTATGGGAATAATTATCACGGGCCTGTGGAGGACAAACCTGCTCTGAAGTTAGGGGCGTTTGTGGAGAGAGACACCACCAGAAATAATGTGTCACCTGCAACTTCTACCAGTTCTTCTACTGCTTTTACAATCCAAGGCAATGTCTATCCAGATGGACTTTATTATGTGTCAATGCTCATTGGGAACCCACCAAAGGCCTATCACCTTGATGTTGACACAGGGAGTGATTTGACTTGGATCCAGTGTGATGCTCCTTGCAGAAGTTGTGCCAAGGGACCACACGCTCTGTACAAACCCAAGAAAAGCCAACTTGTATCCTGCATGGAGCCGATGTGTGTGAATGTGCAAGCAGGTCACAGCTATGAATGCACAAGTACCTCTGAACAGTGTGACTATGAGATAGAGTATGCTGATCTGGGATCCTCTATGGGAGTTCTTGCGAGAGACAATATTAGGGTGTTACTGACAAATGGCTCTATAGCTCGAACAAATTTTGTGTTTGGATGTGCATATGACCAGCAGGGTTCTCTTGCAGTTTCACCTGCAGTGACAGATGGAGTATTGGGCCTTAGCAGTGCTCAGGTTAGTCTGCCATCACAATTAGCAAGTCAAGGTCTGACTAAGAATGTGATTGGTCATTGCATTGCTGGAGATGAAAGAGATGAAAGAGGTGGGGGTTATATGTTCTTTGGCAATGATCTTGTACCTGTGTGGGGAATGACATGGGTTCCCATGCTTGGAAAGCCTGCAATGAAATTATATTACGTGGGCAATGCAAATATGAAACTTGGAAACAGACCGCTTGTTTCTAATGACCTAAAAAACAAATTAGGAGGGGTGGTTTTTGATAGTGGTAGCTCCTTTACATATCTCACACAGACAGCTTACTTCGCATTTGTCTCAGCAGTTAAAGAGAACCTTTTTGGAGGAGGGTTAGTACAGGATTTGTCAGATAAAACTTTACCGCTGTGTTGGCGGGCAAGACATCGTATCAGGTCTATAGCAGATGTGAAACCTTTCTTCAAACCATTGACTCTGGATTTTGGGGGCAACCCATGGCTTATTAAGACCAAACAGTTTGACATTCCCCCAGAAGGTTACTTGGTCATCAGTTCTCATGGTAATGTTTGTCTGGGAATCCTCAATGGCAGTGAAGTGAACAATGGTGACACAAATATAATTGGAGACATTTCTTTGCAAGGACATCTGATTGTTTATGACAATGTCAAGAACCAGATTGGCTGGGTCCATGCAGATTGCCACAAGCCACCTAAGACGATGAAGGCCTTCCCCTTTTTTGTGTAAAACAATGCAGCAGGAACTGGTTCATGCTTTGTAATGAATGATGTAAAATTTTGAACATCTTGTCAAATATACAGAAGACAGTTGTTAATGTGCAAGTCATATTATTAGTGTTGGTTATAGCTTATATGTACATTATTTACAGCCACATTTTCTCATATTTGTAGATCTGTCGAGCTATCAATGAGCCATTTCACATATTTAAGTGAAATCACTATTTTAATATGTTTGTATTGTATATATTGCATTGATAGTAGAATATCATATACAGTTTGGAATATGGAGTCTTGTTTATTGTCAATTTTGAAGAATATATCTTGTATCTTGGCAGTTTGGACTAGTCGTTAGATTTTCCATTGTTTACAAGATTTGGACTAGCTGGGCTAGCTTGACAATGTGATATACATT

Ace file of the UniGene sp_v3.0_unigene2991

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	aspartyl protease [Arabidopsis thaliana] gb\|AAF69716.1\|AC016041_21 F27J15.15 [Arabidopsis thaliana] gb\|AAK25892.1\|AF360182_1 unknown protein [Arabidopsis thaliana] gb\|AAK64075.1\| unknown protein [Arabidopsis thaliana] gb\|AEE32388.1\| aspartyl protease [Ara	-	-	0.0	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%
Sma3	Nucellin-like protein	-	-	2.298e-14	-

Source	Gene names
Sma3	ASP1; AT4g33490; At1g44130; At1g49050; At1g77480; At1g77480/T5M16.7; At4g33490/F17M5_250; DcNLP; F17M5.250; GSVIVT00015411001; GSVIVT00017657001; GSVIVT00019286001; LOC_Os11g08100; LOC_Os11g08200; LOC_Os12g07780; OSJNBa0072H09.41; OSJNBa0084K06.4; Os02g07

Source	GOs	Term	Type	Identity
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protease inhibitor I4, serpin	IPR000215	-	-
Sma3	Peptidase A1	IPR001461	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRU1

Fln msg: your sequence is longer than subject: 553 - 446

Fln protein: MATASMQPELKGVVIISLPPPDNPNEGKTVCAAFTVRGGGGGGGAVQQQQQQQQIPNPNPRRPFLSRRRARLRKATAILFVSALALAIWYWTPDSGFDNSPNEDDDDSKVGVYTLYPKYGNNYHGPVEDKPALKLGAFVERDTTRNNVSPATSTSSSTAFTIQGNVYPDGLYYVSMLIGNPPKAYHLDVDTGSDLTWIQCDAPCRSCAKGPHALYKPKKSQLVSCMEPMCVNVQAGHSYECTSTSEQCDYEIEYADLGSSMGVLARDNIRVLLTNGSIARTNFVFGCAYDQQGSLAVSPAVTDGVLGLSSAQVSLPSQLASQGLTKNVIGHCIAGDERDERGGGYMFFGNDLVPVWGMTWVPMLGKPAMKLYYVGNANMKLGNRPLVSNDLKNKLGGVVFDSGSSFTYLTQTAYFAFVSAVKENLFGGGLVQDLSDKTLPLCWRARHRIRSIADVKPFFKPLTLDFGGNPWLIKTKQFDIPPEGYLVISSHGNVCLGILNGSEVNNGDTNIIGDISLQGHLIVYDNVKNQIGWVHADCHKPPKTMKAFPFFV*

Protein Length: 554

Fln nts: GAAAGAAGGGGCGAGGTAAACCAGACAGGTCCTTGTCATGTGGCCCATGATGACAAATACATTTCTGAGAAATTGACAATGTCCCCCACCACATTAGGGCGGGAGGTTGGGCCGTGATGTACAAGCAGGCAGAATGGTAGAAATTATCAGGTAACACAGATCGGTGGGCTTTCCTTCCACTCTGTATATTCGCCCTGGTGGTCCGCTGCCCTGGGTTTAAGATAATATACCTTCCGTATATATTATCC_-_ATGGCTACTGCATCAATGCAGCCTGAATTAAAAGGCGTGGTCATAATTTCCTTGCCCCCTCCAGACAACCCAAATGAAGGAAAAACTGTGTGTGCAGCTTTTACGGTTAGAGGAGGAGGAGGAGGAGGGGGTGCAGTTCAGCAGCAGCAGCAGCAGCAGCAAATACCCAATCCAAATCCCAGGAGGCCCTTTCTCAGCAGGAGGAGGGCGCGTTTGAGGAAGGCCACTGCTATCTTGTTTGTGTCTGCACTGGCCCTGGCAATCTGGTATTGGACGCCTGATTCTGGATTTGATAACAGTCCCAACGAGGATGATGATGACAGTAAAGTGGGCGTGTATACTCTGTATCCAAAGTATGGGAATAATTATCACGGGCCTGTGGAGGACAAACCTGCTCTGAAGTTAGGGGCGTTTGTGGAGAGAGACACCACCAGAAATAATGTGTCACCTGCAACTTCTACCAGTTCTTCTACTGCTTTTACAATCCAAGGCAATGTCTATCCAGATGGACTTTATTATGTGTCAATGCTCATTGGGAACCCACCAAAGGCCTATCACCTTGATGTTGACACAGGGAGTGATTTGACTTGGATCCAGTGTGATGCTCCTTGCAGAAGTTGTGCCAAGGGACCACACGCTCTGTACAAACCCAAGAAAAGCCAACTTGTATCCTGCATGGAGCCGATGTGTGTGAATGTGCAAGCAGGTCACAGCTATGAATGCACAAGTACCTCTGAACAGTGTGACTATGAGATAGAGTATGCTGATCTGGGATCCTCTATGGGAGTTCTTGCGAGAGACAATATTAGGGTGTTACTGACAAATGGCTCTATAGCTCGAACAAATTTTGTGTTTGGATGTGCATATGACCAGCAGGGTTCTCTTGCAGTTTCACCTGCAGTGACAGATGGAGTATTGGGCCTTAGCAGTGCTCAGGTTAGTCTGCCATCACAATTAGCAAGTCAAGGTCTGACTAAGAATGTGATTGGTCATTGCATTGCTGGAGATGAAAGAGATGAAAGAGGTGGGGGTTATATGTTCTTTGGCAATGATCTTGTACCTGTGTGGGGAATGACATGGGTTCCCATGCTTGGAAAGCCTGCAATGAAATTATATTACGTGGGCAATGCAAATATGAAACTTGGAAACAGACCGCTTGTTTCTAATGACCTAAAAAACAAATTAGGAGGGGTGGTTTTTGATAGTGGTAGCTCCTTTACATATCTCACACAGACAGCTTACTTCGCATTTGTCTCAGCAGTTAAAGAGAACCTTTTTGGAGGAGGGTTAGTACAGGATTTGTCAGATAAAACTTTACCGCTGTGTTGGCGGGCAAGACATCGTATCAGGTCTATAGCAGATGTGAAACCTTTCTTCAAACCATTGACTCTGGATTTTGGGGGCAACCCATGGCTTATTAAGACCAAACAGTTTGACATTCCCCCAGAAGGTTACTTGGTCATCAGTTCTCATGGTAATGTTTGTCTGGGAATCCTCAATGGCAGTGAAGTGAACAATGGTGACACAAATATAATTGGAGACATTTCTTTGCAAGGACATCTGATTGTTTATGACAATGTCAAGAACCAGATTGGCTGGGTCCATGCAGATTGCCACAAGCCACCTAAGACGATGAAGGCCTTCCCCTTTTTTGTGTAA___AACAATGCAGCAGGAACTGGTTCATGCTTTGTAATGAATGATGTAAAATTTTGAACATCTTGTCAAATATACAGAAGACAGTTGTTAATGTGCAAGTCATATTATTAGTGTTGGTTATAGCTTATATGTACATTATTTACAGCCACATTTTCTCATATTTGTAGATCTGTCGAGCTATCAATGAGCCATTTCACATATTTAAGTGAAATCACTATTTTAATATGTTTGTATTGTATATATTGCATTGATAGTAGAATATCATATACAGTTTGGAATATGGAGTCTTGTTTATTGTCAATTTTGAAGAATATATCTTGTATCTTGGCAGTTTGGACTAGTCGTTAGATTTTCCATTGTTTACAAGATTTGGACTAGCTGGGCTAGCTTGACAATGTGATATACATT

Fln Alignment:

Contig2991___VYTLYPKYGNNYHGPVEDKPALKLGAFVERDTTRNNVSPXXXXXXXXXXXIQGNVYPDGLYYVSMLIGNPPKAYHLDVDTGSDLTWIQCDAPCRSCAKGPHALYKPKKSQLVSCMEPMCVNVQAG--HSYECTSTSEQCDYEIEYADLGSSMGVLARDNIRVLLTNGSIARTNFVFGCAYDQQGSLAVSPAVTDGVLGLSSAQVSLPSQLASQGLTKNVIGHCIAGDERDERGGGYMFFGNDLVPVWGMTWVPMLGKPAMKLYYVGNANMKLGNRPLVSNDLKNKLGGVVFDSGSSFTYLTQTAYFAFVSAVKENLFGGGLVQDLSDKTLPLCWRARHRIRSIADVKPFFKPLTLDFGGNPWLIKTKQFDIPPEGYLVISSHGNVCLGILNGSEVNNGDTNIIGDISLQGHLIVYDNVKNQIGWVHADCHKPPK
B8LRU1______________VYRLQPKYP----AADNDEEGSK-ASFVSRDT--NRIGRRLQAHQTAIFSLKGNVVPYGLYYVTMLVGNPSKPYFLDVDSGSELTWIQCDAPCISCAKGPHPLYKLKKGSLVPSKDPLCAAVQAGSGHYHNHKEASQRCDYDVAYADHGYSEGFLVRDSVRALLTNKTVLTANSVFGCGYNQRESLPVSDARTDGILGLGSGMASLPSQWAKQGLIKNVIGHCIFGAGRD---GGYMFFGDDLVSTSAMTWVPMLGRPSIKHYYVGAAQMNFGNKPLDKDGDGKKLGGIIFDSGSTYTYFTNQAYGAFLSVVKENLSGKQLEQDSSDSFLSLCWRRKEGFRSVAEAAAYFKPLTLKFRST----KTKQMEIFPEGYLVVNKKGNVCLGILNGTAIGIVDTNVLGDISFQGQLVVYDNEKNQIGWARSDCQEISK

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
802		85		14	0.993533
838			57	42	1.0
970			25	75	0.996473
971		75		25	0.996473
972	75			25	0.996473
974	75			25	0.996473
981	75	25			0.996473
986	75			25	0.996473
1321	80		20		0.995493
1436	83			16	0.994512
1553		66	33		0.997452
1753	97		2		0.949185
1832		1		94	1.0
2030	1	4		94	0.999876
2096		97		2	0.953846
2112		2		97	0.960269

SSRs (tot: 2)

Start position	End position	Sequence	Length
358	376	GAG GAG GAG GAG GAG GAG G	19
387	409	CAG CAG CAG CAG CAG CAG CAG CA	23

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain