SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2984

Length: 2676 nt

UniGene Fasta

>sp_v3.0_unigene2984
CGATCATGCTCATTTCTTTTGGGCAAGTTTTTCACTCGTGAAAAACTTGTGCCAGCACAGTGAATTTGATCCACGAAACAGAGGTGTGTTTGCGCGAGAGAAAGATTGCTGTTGCGAAGCCGGCGAAATGCCGCGGAAAACAATCGTATTCAGTCGATCACAGATTTAGTCATTCTTTGGAGAATTTATGTTATTTAGCGGCAAAGCCTTATTTCCAAGCGCTTTCATATTATTTTCTTCGTATTCTCACAGCCTTTCGATAGTTAACATCGACGGATTTGCTGCAGTTGAAAAAACCGGTTTTGAGGTCCAGTGAAGCTTGGAGCAGCTAGATTTTTCATTTCTTTCGAGGCAATCTTTCACAATGGGTGCCGGAAATATTGTTTCTGATGATGAAGATCAAAGAAGTAATTATTGATCTCACTTCTGTAGTCAAACCCAATTCCCAAAGGATGTACGGTTGACTGGTTATTTTATAATCTTTTTGCAAACTGGATAACTATGCTTATATCAACATCCTTTTAGTTATTGCATTGTGCATGGGGTTCTGCTAAATGAAGTGTTGCATTGGAAATCTCCATGAGTACGTAGAACAAATTGCATAATGAAGACCAAAGTAAGGAAGGCTTCAGCAACAGTTGGTGGAGGCCAAGGATGTCCCAATTTAAATAAGAGCAAGAAAGCTTGCCATTATCTTGGAATAAATAATGAGGCGGCAGAATTAATGACTTCCACGCCGAATTGTAGGTTTGTGTGCATTTCATCGAGCTGCTTAATGCCTGGTCATGAAATTTTTGGAGGCAAGTGGGATAAGAATGCTGACCATATAAGAGAGTCGGCTGATGATGCTTGTCAAGATCTAAGACCAACATTCTCTGCTATAGATGTGCCATTGGTTGATCAAAAGGTATACATGCAAACAGCTCATCCATCTGCAGTTGACACCCTATTTTCACCTGTTCCTTGTATGCCAAAGGTTGAAGCCTCAACAACTTGTTACGGTAGTGATAATGACCGTGGAGATGCTGATGAGAAAATTGACATGGTAGATGGCAGACAAGAGGCCAACAGGATTGCATGTGAAGATAACTGTACGACTAAGACTATTTCAGCTGCTTATCCAACTTCAGATGTATTTAGAGATGCAACTATTACTAGATTTTCTGCAGAGACAGCTGTGACAGTGCACGATATATTGAGAAACACGGAAAGTTCACATGAGGATGAATTTATTGGCTCTCAAACGGCATTTGATGTTACTGAGAGTTGTCTCATATGGCCTCTTGTAGATGAAAATGCAGCCGCTGATCACAGGCATGAAACTTTATCTGTTGAGGAAGCTCTCTTAAACTCGGATGGTGCATGCTTGTTCTTTGCAATACAACAAACTAAGTCTTTGGAATACGGCGACAAGGATGCAAATGTCTCCAGCATTCCTGATGAGGTGGATGATTTTGATCCATATTTATTTATAAAAAGCTTGCCTGACCTCTCAGAAGTGGTTCCACCATATCGTCCAGGACTCTTACCTAGACAAACAAGACGAAGGCAGCCTATCACACTTGTATTAGACTTGGATGAAACACTCGTGCATTCTACTCTAGAGTACTGTGATGATGCAGACTTCACGTTTCAAGTACGTTTTAATCTGAAGGAGCATACTGTATATGTACGATGTAGACCTTATCTTCAAGTGTTTATGGAGAAAGTTGCACAAATGTTTGAAATAATAGTGTTCACAGCCAGTCAAAGTATTTATGCAGAGCAACTTTTAAATAAGCTTGATCCAAAGCAAAAGCTTATACGCCATCGTGTTTACCGTGAATCATGCATGTTTGTAGATGGTAATTATATGAAGGATCTGACAGTTTTGGGACGTGATCTTGCAAAGGTTGCCATCATTGACAACTCGCCACAGGCCTTTCGATATCAAGTAGACAATGGCATTCCTATTGAAAGCTGGTTTGATGATCGTTCAGACTGTGCTTTAGTTTCATTGCTTCCTTTCTTGGAGACATTGGTTGGTGTAGACGACGTTCGTCCAATTATAGCAAACAAATTTAATCTTCGTCAAACAATTGCAGCTATTGATATGGAACGCAGAGAGGACTTTGTTTGATGGGCACAATTGATTAGAGAGGAGAGTGTTAATGCTCTTACACACTCCTTTCAATTTGTAGTAGTCTAGATTGATATTAATTTTTTTTAATCGAGTTGATGTGATTGCTCTTGCGAGGGAAATATTGGTTGGTGGTGATAATGATATAGTGTGTACGATTAACATAGTTGATCTTCATTGTAATGGAAATCATTATCGCAAGAACTTATTTCCCGTTGGTTCATTTGAAATAACTTTAGTGAATGGCGCTCGAGGGAGTTTGTTGCAAACACGAAGATTATCTGGGTTTATACGTACCCTTTTATTTTTCAGGGATAAGTGCCCAAAAATTGCATAGGCAAGGGGCTAGGTTTTTTTGCTGAACAGGCAGTATTTTGAAGGAGAAATATTCCTGAACAATAATAGCTTGTACATGGGAAAATCTTGTGTTTATGGTCCGTTCTTTGATAACAGAGGACCATCTTCTTTGATTAAATAAAAAGCTTATTTGCAACTGGCATGGGATTCATGTCTATTTGGACTGCATTCTGGGAGTTGGTTGGCTTTCAACAATTATC

Ace file of the UniGene sp_v3.0_unigene2984

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SCP1-like small phosphatase 5 [Arabidopsis thaliana] ref\|NP_850809.1\| SCP1-like small phosphatase 5 [Arabidopsis thaliana] ref\|NP_974767.1\| SCP1-like small phosphatase 5 [Arabidopsis thaliana] ref\|NP_001078572.1\| SCP1-like small phosphatase 5 [Arabidopsis	-	-	0.0	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%
Sma3	Putative nuclear LIM factor interactor-interacting protein cleavage-specific form	-	-	2.695e-08	-

Source	Gene names
Sma3	AT4g18140; At5g11860; At5g46410; At5g46410/MPL12_21; CHLREDRAFT_118402; CHLREDRAFT_149388; F14F18_30; F15J5.110; GSVIVT00002679001; GSVIVT00002818001; GSVIVT00003389001; LOC_Os03g63300; MICPUCDRAFT_5599; MICPUCDRAFT_6488; MICPUN_71468; MICPUN_92195; NIF4;

Source	GOs	Term	Type	Identity
Sma3	chromosome, centromeric region	GO:0000775	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	phosphatase activity	GO:0016791	Molecular Function	-

Source	InterPros	Term	Type	e value	Identity
Sma3	NLI interacting factor	IPR004274	-	0.0	-
Sma3	Dullard phosphatase domain, eukaryotic	IPR011948	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G11860.1	SSP5 SCP1-like small phosphatase 5 chr5:3822024-3823395 REVERSE LENGTH=305	63%
RefSeq	Arabidopsis thaliana	NP_196747.1	SCP1-like small phosphatase 5 [Arabidopsis thaliana]	63%
RefSeq	Populus trichocarpa	XP_002299297.1	predicted protein, partial [Populus trichocarpa]	67%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQY3

Fln msg:

Fln protein: MKTKVRKASATVGGGQGCPNLNKSKKACHYLGINNEAAELMTSTPNCRFVCISSSCLMPGHEIFGGKWDKNADHIRESADDACQDLRPTFSAIDVPLVDQKVYMQTAHPSAVDTLFSPVPCMPKVEASTTCYGSDNDRGDADEKIDMVDGRQEANRIACEDNCTTKTISAAYPTSDVFRDATITRFSAETAVTVHDILRNTESSHEDEFIGSQTAFDVTESCLIWPLVDENAAADHRHETLSVEEALLNSDGACLFFAIQQTKSLEYGDKDANVSSIPDEVDDFDPYLFIKSLPDLSEVVPPYRPGLLPRQTRRRQPITLVLDLDETLVHSTLEYCDDADFTFQVRFNLKEHTVYVRCRPYLQVFMEKVAQMFEIIVFTASQSIYAEQLLNKLDPKQKLIRHRVYRESCMFVDGNYMKDLTVLGRDLAKVAIIDNSPQAFRYQVDNGIPIESWFDDRSDCALVSLLPFLETLVGVDDVRPIIANKFNLRQTIAAIDMERREDFV*

Protein Length: 506

Fln nts: CGATCATGCTCATTTCTTTTGGGCAAGTTTTTCACTCGTGAAAAACTTGTGCCAGCACAGTGAATTTGATCCACGAAACAGAGGTGTGTTTGCGCGAGAGAAAGATTGCTGTTGCGAAGCCGGCGAAATGCCGCGGAAAACAATCGTATTCAGTCGATCACAGATTTAGTCATTCTTTGGAGAATTTATGTTATTTAGCGGCAAAGCCTTATTTCCAAGCGCTTTCATATTATTTTCTTCGTATTCTCACAGCCTTTCGATAGTTAACATCGACGGATTTGCTGCAGTTGAAAAAACCGGTTTTGAGGTCCAGTGAAGCTTGGAGCAGCTAGATTTTTCATTTCTTTCGAGGCAATCTTTCACAATGGGTGCCGGAAATATTGTTTCTGATGATGAAGATCAAAGAAGTAATTATTGATCTCACTTCTGTAGTCAAACCCAATTCCCAAAGGATGTACGGTTGACTGGTTATTTTATAATCTTTTTGCAAACTGGATAACTATGCTTATATCAACATCCTTTTAGTTATTGCATTGTGCATGGGGTTCTGCTAAATGAAGTGTTGCATTGGAAATCTCCATGAGTACGTAGAACAAATTGCATA_-_ATGAAGACCAAAGTAAGGAAGGCTTCAGCAACAGTTGGTGGAGGCCAAGGATGTCCCAATTTAAATAAGAGCAAGAAAGCTTGCCATTATCTTGGAATAAATAATGAGGCGGCAGAATTAATGACTTCCACGCCGAATTGTAGGTTTGTGTGCATTTCATCGAGCTGCTTAATGCCTGGTCATGAAATTTTTGGAGGCAAGTGGGATAAGAATGCTGACCATATAAGAGAGTCGGCTGATGATGCTTGTCAAGATCTAAGACCAACATTCTCTGCTATAGATGTGCCATTGGTTGATCAAAAGGTATACATGCAAACAGCTCATCCATCTGCAGTTGACACCCTATTTTCACCTGTTCCTTGTATGCCAAAGGTTGAAGCCTCAACAACTTGTTACGGTAGTGATAATGACCGTGGAGATGCTGATGAGAAAATTGACATGGTAGATGGCAGACAAGAGGCCAACAGGATTGCATGTGAAGATAACTGTACGACTAAGACTATTTCAGCTGCTTATCCAACTTCAGATGTATTTAGAGATGCAACTATTACTAGATTTTCTGCAGAGACAGCTGTGACAGTGCACGATATATTGAGAAACACGGAAAGTTCACATGAGGATGAATTTATTGGCTCTCAAACGGCATTTGATGTTACTGAGAGTTGTCTCATATGGCCTCTTGTAGATGAAAATGCAGCCGCTGATCACAGGCATGAAACTTTATCTGTTGAGGAAGCTCTCTTAAACTCGGATGGTGCATGCTTGTTCTTTGCAATACAACAAACTAAGTCTTTGGAATACGGCGACAAGGATGCAAATGTCTCCAGCATTCCTGATGAGGTGGATGATTTTGATCCATATTTATTTATAAAAAGCTTGCCTGACCTCTCAGAAGTGGTTCCACCATATCGTCCAGGACTCTTACCTAGACAAACAAGACGAAGGCAGCCTATCACACTTGTATTAGACTTGGATGAAACACTCGTGCATTCTACTCTAGAGTACTGTGATGATGCAGACTTCACGTTTCAAGTACGTTTTAATCTGAAGGAGCATACTGTATATGTACGATGTAGACCTTATCTTCAAGTGTTTATGGAGAAAGTTGCACAAATGTTTGAAATAATAGTGTTCACAGCCAGTCAAAGTATTTATGCAGAGCAACTTTTAAATAAGCTTGATCCAAAGCAAAAGCTTATACGCCATCGTGTTTACCGTGAATCATGCATGTTTGTAGATGGTAATTATATGAAGGATCTGACAGTTTTGGGACGTGATCTTGCAAAGGTTGCCATCATTGACAACTCGCCACAGGCCTTTCGATATCAAGTAGACAATGGCATTCCTATTGAAAGCTGGTTTGATGATCGTTCAGACTGTGCTTTAGTTTCATTGCTTCCTTTCTTGGAGACATTGGTTGGTGTAGACGACGTTCGTCCAATTATAGCAAACAAATTTAATCTTCGTCAAACAATTGCAGCTATTGATATGGAACGCAGAGAGGACTTTGTTTGA___TGGGCACAATTGATTAGAGAGGAGAGTGTTAATGCTCTTACACACTCCTTTCAATTTGTAGTAGTCTAGATTGATATTAATTTTTTTTAATCGAGTTGATGTGATTGCTCTTGCGAGGGAAATATTGGTTGGTGGTGATAATGATATAGTGTGTACGATTAACATAGTTGATCTTCATTGTAATGGAAATCATTATCGCAAGAACTTATTTCCCGTTGGTTCATTTGAAATAACTTTAGTGAATGGCGCTCGAGGGAGTTTGTTGCAAACACGAAGATTATCTGGGTTTATACGTACCCTTTTATTTTTCAGGGATAAGTGCCCAAAAATTGCATAGGCAAGGGGCTAGGTTTTTTTGCTGAACAGGCAGTATTTTGAAGGAGAAATATTCCTGAACAATAATAGCTTGTACATGGGAAAATCTTGTGTTTATGGTCCGTTCTTTGATAACAGAGGACCATCTTCTTTGATTAAATAAAAAGCTTATTTGCAACTGGCATGGGATTCATGTCTATTTGGACTGCATTCTGGGAGTTGGTTGGCTTTCAACAATTATC

Fln Alignment:

Contig2984___IMKTKVRKASATVGGG-QGCPNLNKS-KKACHYLGINN-EAAELMTSTPNC-RFVCISSSCLMPGHEIFGGKWDKNADHIRESADDACQDLRPTFSAIDVPLVDQKVYMQTAHPSAVDTLFSPVPCMPKVEASTTCYGSDNDRGDADEKIDMVDGRQEANRIACEDNCTTKTISAAYPTSDVFRDATITRFSAETAVTVHDILRNTESSHEDEFIGSQTAFDVTESCLIWPLVDENAAADHRHETLSVEEALLNSDGACLFFAIQQTKSLEYGDK---DANVSSIPDEVDDFDPYLFIKSLPDLSEVVPPYRPGLLPRQTRRRQPITLVLDLDETLVHSTLEYCDDADFTFQVRFNLKEHTVYVRCRPYLQVFMEKVAQMFEIIVFTASQSIYAEQLLNKLDPKQKLIRHRVYRESCMFVDGNYMKDLTVLGRDLAKVAIIDNSPQAFRYQVDNGIPIESWFDDRSDCALVSLLPFLETLVGVDDVRPIIANKFNLRQTIAAID
B8LQY3______________MMKNKSRKPSTRVGNSEQICPSSNRRRKKSRHDLEMKERKVAELITSSARKHRIVHVSTSLVSPNRQNIGGNGVTAVNGNTELADDVCQDLRLAFSTIDGPCIERK----KTRPSVVGTIFSPVFHMSKDATSGTSTTCTVDQGELLVHKNQAANKRNENGDSFEEH--KRSVIDTPPTSGNLQKESLTRLSTDMAEAVQGSVTNSGNLPDDELVGSQTAFDATQNGIEWPLVDQNTSIDHRHGSEPVQEGLLSLDGTSLFLAMQQTKLLKCNDEASQESRVADEDDEIDDFDPYLFIKNLPDLSEVVSSFRPMLLPKQTRRCPPITLVLDLDETLVHSTLEHCDDADFTFPVHFNLKEHTVYVRCRPHLQLFMDRVADMFEIIVFTASQSVYAEQLLNVLDPKRKLIRHRVYRESCVFVEGNYLKDLTILGRDLAQVAIIDNSPQAFGFQVDNGIPIESWFDDRSDYALVTLLPFLESLVGLNDVRPIIAKKFNLREKIAAAE

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
610			88	11	0.923564
611	88		11		0.923564
612		88		11	0.923564
647	11		88		0.923564
672	90		10		0.90298
869	90			10	0.90298
1231	11			88	0.999952
1396		11		88	0.923564
1420	12	87			0.992554
1421	87	12			0.992554
1464		14		85	0.993533
1479	75		25		0.996473
1610	10	90			0.90298
1835			85	14	0.993533
1930	80			20	0.995493
2154			90	10	0.90298
2235			18	81	0.999994
2433			90	10	0.90298
2610			66	33	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain