SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2982

Length: 3043 nt

UniGene Fasta

>sp_v3.0_unigene2982
GCGGTAAAGACTGAAGCATTTCTTAAGGGAAAGCCATGGACATTACAGACATTGCAGGGTGCTTTGCAAGTATTGCAACATGATATCATCATTGCAGAGAATGCCCCTGGGGGCATGGTTGAGTTTCGTCAATCATTGACAAGAAGCTTCTTTTTCAAATTCTTCCTGTGGATATCTTATAATATTCGGCAGAAGACACAAGTTTTGCTGGGTTTACCAGATTCGTACAAGTCAGCAGTTGATCCATACAAAAGACCATCATCCAAAGGAGTTCAGAGTTATGAATGTCCTATAAATGGAACAGCGGTGGGTCTCCCTGTTGTGCATCTTTCAGCCAAGCTTCAGGTGACTGGTGAAGCAGAGTATGCTGATGATGTACCAATGCCATCAAATGGTTTACATGCTGCATTAGTGTTGAGCAAGAAGCCACATGCTCGAATTCGTTCTCTTGATGATTCAGCTGCCAAAGCTGTTCCTGGTTTTCAGGGCTTTTTTACAGCAAAAGATGTGCCTGGTGGTAATGATATTGGACCCACAGTAAATGATGAGGAGCTTTTTGCATCAGAACTTGTGACTTGTGTGGGTCAGGTGATTGGTATTGTGGTTGCTGATACATATGAAAATGCCAAAATAGCATCTAAAATGATTCAGGTTGAGTATGAGGAATTGCCAGCAGTCCTATGTATAAGGGATGCTCTTCGAGCTGGCAGTTTTCTTCCTAATTGTGTAAGGGTACTTGAGGAGGGTGATGTTGACAAGTGTTTCAGTTCTGGATTATGTTACAAAATAATTGAGGGTGAAGTGCAAATTGGAGGTCAAGAGCACTTTTACTTGGAGCCAAACAGCACATTGATATGGACAGCTGATGGTGGTAATGAAGTTCACATGATTTCTTCTTCTCAAGCTCCACAAAAGCATCAGAAGTATGTCTCCCATGTTTTGGGGTTACCTATGAATAAGGTTGTTTGCAAGACCAAACGCCTAGGTGGCGGCTTTGGTGGGAAGGAGACACGATCAGCATTTATAGCTGCAGCAGCTGCTGTGCCATGCTACCTCTTGAGACGGCCTATCAGGATCACATTAGACAGAGACATTGATATGCAGATCACAGGGCAAAGGCATGCTTTTCTTGGAAAATACAAGGTTGGATTTTCACAAGAGGGGAAAGTATTGGCACTGGACTTAGAGATATATAACAATGGTGGAAACTCATTAGATTTGTCATTTTCAGTTCTTGAGCGTGCAATGTTTCATTCTGACAATGTATATGAGATTCAAAATGTCAGAATCAAGGGTAATGTTTGCTTCACAAATCTTCCCAGTCATACTGCATTTAGAGGGTTTGGAGGGCCTCAAGGGATGCTTATTACTGAAAACTGGATTGAACATATTGCTAGGGTGCTTGGAAAAGCCCCTGAAGAGATAAAGGAATTGAACTTTCAAAAGGAAGGATATGTGCTTCATTATGGTCAGAAGCTTGAACAATGTAGATTGCAGCAGGTTTTTAATGAATTAAAGGCATCTTGTGATTTCGACACATCGCGCAGAGAGGTTGATAAATTTAATTCATTAAATCGTTGGAAAAAACGTGGAGTGGCAATGGTTCCAACAAAGTTTGGCATTTCTTTCACAACCAAATTTCTGAATCAGGCAGGGGCTCTGGTTCAAGTATATACTGATGGAACAGTTTTAGTGACCCATGGAGGTGTTGAAATGGGCCAAGGACTTCATACCAAAGTTGCTCAAATTGCTGCTTCTGCTTTGGGCATTTCTGTCAACAGTGTCTTTATTTCAGAGACAAGTACTGACAAGGTACCAAATTCATCACCTACAGCAGCTTCAGCTAGCTCTGACATGTATGGTGCTGCAGTTCTAGATGCTTGTGAACAGATCAAGTCCCGAATGGCACCAGTTGCAGCAAAAAATAGACACACTTCATTTGCTGAGCTTGCACAAGCATGTCACATGGAGCGCATAGATCTATCAGCTCATGGCTTTCATGCAACTCCTGACATTGGCTTTGACTGGCGCATTGGGAAAGGAAAACCATTCAACTACTTCACCTTTGGTGCCGCATTTGCTGAGGTGGAAGTTGACACATTAACTGGGGATTTTCATTTGAGGGAAGTGGACATAGTGATGGATTTGGGGAATTCACTTAATCCTGCAATTGATATTGGCCAGGTTGAAGGAGGCTTTATACAGGGCTTAGGCTGGTGTGTGCTTGAAGAGGTAAAATGGGGTGACCCAGCTCACCAATTTGTTAGGCCAGGGCATCTATTTACACAGGGTCCAGGCACATACAAGTTGCCAACTGTGAATGACATTCCTCTGAAGTTCAGGGTTTCTCTTTTGAAGGGAGCTCCAAATCAAAGAGCAATCCATTCATCTAAAGCAGTAGGCGAACCTCCTTTATTTTTAGCATCTGCTGCATTTTTCGCTATCAAGGATGCCATTTTAGCAGCGAGGAAGGAGACAGGACATGAGGGTTGGTTTGTTCTTGACAGTCCAGCAACTCCAGAGAGGATTCGAATGGCTTGTGCAGACGAGTTTACACAACCCTTTGCTGACTCAGAATTTCGTCCTAAACTGAGTGTATAAACATGTCATTCAGTGTAATAGAAATCAAACACTCTCGAGTATTTCCACTGAATAGAGATATGCTATAAATTTTAGAGCATGTTCCTGAAATCTAACTTCGTTGGAAATAATCATTGTTTAAGTTAGGTTAGCATTGTCAAAAATGAAATGGAAGAATTGCATTTCATTTTCTGGTATGTATATTCCTTTTATCGACTCTCGAGTAAAGTTTCGCTTTATTGATGGTGGTCACATGTTTTTGGATGGATCCTACTAGTAATGACATGTTATTGTTTAAGATATGCACTTGCATTTTAGTTTCCTAGCAAGAACGACATCAGGAATATTTTTCGATGGAATATCTATTTACTTGTTTATGTTATAGAAGTGGGCTTGTCAATATACACCATCCTTGATGTAAATCTATGCATCTAGTATAGAAGTGCTAGATTGATGTGTGTTA

Ace file of the UniGene sp_v3.0_unigene2982

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	xanthine dehydrogenase 1 [Arabidopsis thaliana] gb\|AAO11781.1\| xanthine dehydrogenase 1 [Arabidopsis thaliana] gb\|AEE86434.1\| xanthine dehydrogenase 1 [Arabidopsis thaliana]	-	-	0.0	69%
FL-Next	sp=Xanthine dehydrogenase 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	71%
Sma3	Xanthine dehydrogenase	-	-	6.808e-12	-

Source	ECs	Term	Type	e value	Identity
Sma3	Transferred entry: 1.17.1.4.	EC:1.1.1.204	-	4.294e-08	-
Sma3	Xanthine oxidase.	EC:1.17.3.2	-	1.431e-08	-

Source	KEGGs	Term	e value	Identity
Sma3	Purine metabolism	00230	1.431e-08	%
Sma3	Caffeine metabolism	00232	1.431e-08	%
Sma3	Drug metabolism - other enzymes	00983	1.431e-08	%
Sma3	Metabolic pathways	01100	1.431e-08	%
Sma3	Biosynthesis of secondary metabolites	01110	1.431e-08	%

Source	Gene names
Sma3	AT4g34890; AT4g34900; AT4g37500; At3g04390; At4g34890; At4g34900; At4g34900/F11I11_140; At4g37500; CHLREDRAFT_117669; F6G17.150; GSVIVT00024622001; LOC_Os03g31550; MICPUN_83794; OSJNBa0091B22.11; Os03g0429800; OsI_12147; OsJ_11360; POPTRDRAFT_586311; POPT

Source	GOs	Term	Type	Identity
Sma3	xanthine dehydrogenase activity	GO:0004854	Molecular Function	-
Sma3	xanthine oxidase activity	GO:0004855	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	metal ion binding	GO:0046872	Molecular Function	-
Sma3	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	-
Sma3	iron-sulfur cluster binding	GO:0051536	Molecular Function	-
Sma3	purine base catabolic process	GO:0006145	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead	IPR000674	-	-
Sma3	2Fe-2S ferredoxin-type domain	IPR001041	-	-
Sma3	Molybdopterin dehydrogenase, FAD-binding	IPR002346	-	-
Sma3	[2Fe-2S]-binding	IPR002888	-	-
Sma3	CO dehydrogenase flavoprotein, C-terminal	IPR005107	-	-
Sma3	2Fe-2S ferredoxin, iron-sulphur binding site	IPR006058	-	-
Sma3	Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding	IPR008274	-	-
Sma3	Beta-grasp domain	IPR012675	-	-
Sma3	Xanthine dehydrogenase, small subunit	IPR014307	-	-
Sma3	FAD-binding, type 2	IPR016166	-	-
Sma3	FAD-binding, type 2, subdomain 1	IPR016167	-	-
Sma3	CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2	IPR016169	-	-
Sma3	Aldehyde oxidase/xanthine dehydrogenase	IPR016208	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G34890.1	ATXDH1, XDH1 xanthine dehydrogenase 1 chr4:16618736-16624983 REVERSE LENGTH=1361	71%
RefSeq	Arabidopsis thaliana	NP_195215.2	xanthine dehydrogenase 1 [Arabidopsis thaliana]	71%
RefSeq	Populus trichocarpa	XP_002314067.1	xanthine dehydrogenase [Populus trichocarpa]	72%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q8GUQ8

Fln msg: your sequence is shorter than subject: 867 - 1361

Fln protein: AVKTEAFLKGKPWTLQTLQGALQVLQHDIIIAENAPGGMVEFRQSLTRSFFFKFFLWISYNIRQKTQVLLGLPDSYKSAVDPYKRPSSKGVQSYECPINGTAVGLPVVHLSAKLQVTGEAEYADDVPMPSNGLHAALVLSKKPHARIRSLDDSAAKAVPGFQGFFTAKDVPGGNDIGPTVNDEELFASELVTCVGQVIGIVVADTYENAKIASKMIQVEYEELPAVLCIRDALRAGSFLPNCVRVLEEGDVDKCFSSGLCYKIIEGEVQIGGQEHFYLEPNSTLIWTADGGNEVHMISSSQAPQKHQKYVSHVLGLPMNKVVCKTKRLGGGFGGKETRSAFIAAAAAVPCYLLRRPIRITLDRDIDMQITGQRHAFLGKYKVGFSQEGKVLALDLEIYNNGGNSLDLSFSVLERAMFHSDNVYEIQNVRIKGNVCFTNLPSHTAFRGFGGPQGMLITENWIEHIARVLGKAPEEIKELNFQKEGYVLHYGQKLEQCRLQQVFNELKASCDFDTSRREVDKFNSLNRWKKRGVAMVPTKFGISFTTKFLNQAGALVQVYTDGTVLVTHGGVEMGQGLHTKVAQIAASALGISVNSVFISETSTDKVPNSSPTAASASSDMYGAAVLDACEQIKSRMAPVAAKNRHTSFAELAQACHMERIDLSAHGFHATPDIGFDWRIGKGKPFNYFTFGAAFAEVEVDTLTGDFHLREVDIVMDLGNSLNPAIDIGQVEGGFIQGLGWCVLEEVKWGDPAHQFVRPGHLFTQGPGTYKLPTVNDIPLKFRVSLLKGAPNQRAIHSSKAVGEPPLFLASAAFFAIKDAILAARKETGHEGWFVLDSPATPERIRMACADEFTQPFADSEFRPKLSV*

Protein Length: 868

Fln nts: GCGGTAAAGACTGAAGCATTTCTTAAGGGAAAGCCATGGACATTACAGACATTGCAGGGTGCTTTGCAAGTATTGCAACATGATATCATCATTGCAGAGAATGCCCCTGGGGGCATGGTTGAGTTTCGTCAATCATTGACAAGAAGCTTCTTTTTCAAATTCTTCCTGTGGATATCTTATAATATTCGGCAGAAGACACAAGTTTTGCTGGGTTTACCAGATTCGTACAAGTCAGCAGTTGATCCATACAAAAGACCATCATCCAAAGGAGTTCAGAGTTATGAATGTCCTATAAATGGAACAGCGGTGGGTCTCCCTGTTGTGCATCTTTCAGCCAAGCTTCAGGTGACTGGTGAAGCAGAGTATGCTGATGATGTACCAATGCCATCAAATGGTTTACATGCTGCATTAGTGTTGAGCAAGAAGCCACATGCTCGAATTCGTTCTCTTGATGATTCAGCTGCCAAAGCTGTTCCTGGTTTTCAGGGCTTTTTTACAGCAAAAGATGTGCCTGGTGGTAATGATATTGGACCCACAGTAAATGATGAGGAGCTTTTTGCATCAGAACTTGTGACTTGTGTGGGTCAGGTGATTGGTATTGTGGTTGCTGATACATATGAAAATGCCAAAATAGCATCTAAAATGATTCAGGTTGAGTATGAGGAATTGCCAGCAGTCCTATGTATAAGGGATGCTCTTCGAGCTGGCAGTTTTCTTCCTAATTGTGTAAGGGTACTTGAGGAGGGTGATGTTGACAAGTGTTTCAGTTCTGGATTATGTTACAAAATAATTGAGGGTGAAGTGCAAATTGGAGGTCAAGAGCACTTTTACTTGGAGCCAAACAGCACATTGATATGGACAGCTGATGGTGGTAATGAAGTTCACATGATTTCTTCTTCTCAAGCTCCACAAAAGCATCAGAAGTATGTCTCCCATGTTTTGGGGTTACCTATGAATAAGGTTGTTTGCAAGACCAAACGCCTAGGTGGCGGCTTTGGTGGGAAGGAGACACGATCAGCATTTATAGCTGCAGCAGCTGCTGTGCCATGCTACCTCTTGAGACGGCCTATCAGGATCACATTAGACAGAGACATTGATATGCAGATCACAGGGCAAAGGCATGCTTTTCTTGGAAAATACAAGGTTGGATTTTCACAAGAGGGGAAAGTATTGGCACTGGACTTAGAGATATATAACAATGGTGGAAACTCATTAGATTTGTCATTTTCAGTTCTTGAGCGTGCAATGTTTCATTCTGACAATGTATATGAGATTCAAAATGTCAGAATCAAGGGTAATGTTTGCTTCACAAATCTTCCCAGTCATACTGCATTTAGAGGGTTTGGAGGGCCTCAAGGGATGCTTATTACTGAAAACTGGATTGAACATATTGCTAGGGTGCTTGGAAAAGCCCCTGAAGAGATAAAGGAATTGAACTTTCAAAAGGAAGGATATGTGCTTCATTATGGTCAGAAGCTTGAACAATGTAGATTGCAGCAGGTTTTTAATGAATTAAAGGCATCTTGTGATTTCGACACATCGCGCAGAGAGGTTGATAAATTTAATTCATTAAATCGTTGGAAAAAACGTGGAGTGGCAATGGTTCCAACAAAGTTTGGCATTTCTTTCACAACCAAATTTCTGAATCAGGCAGGGGCTCTGGTTCAAGTATATACTGATGGAACAGTTTTAGTGACCCATGGAGGTGTTGAAATGGGCCAAGGACTTCATACCAAAGTTGCTCAAATTGCTGCTTCTGCTTTGGGCATTTCTGTCAACAGTGTCTTTATTTCAGAGACAAGTACTGACAAGGTACCAAATTCATCACCTACAGCAGCTTCAGCTAGCTCTGACATGTATGGTGCTGCAGTTCTAGATGCTTGTGAACAGATCAAGTCCCGAATGGCACCAGTTGCAGCAAAAAATAGACACACTTCATTTGCTGAGCTTGCACAAGCATGTCACATGGAGCGCATAGATCTATCAGCTCATGGCTTTCATGCAACTCCTGACATTGGCTTTGACTGGCGCATTGGGAAAGGAAAACCATTCAACTACTTCACCTTTGGTGCCGCATTTGCTGAGGTGGAAGTTGACACATTAACTGGGGATTTTCATTTGAGGGAAGTGGACATAGTGATGGATTTGGGGAATTCACTTAATCCTGCAATTGATATTGGCCAGGTTGAAGGAGGCTTTATACAGGGCTTAGGCTGGTGTGTGCTTGAAGAGGTAAAATGGGGTGACCCAGCTCACCAATTTGTTAGGCCAGGGCATCTATTTACACAGGGTCCAGGCACATACAAGTTGCCAACTGTGAATGACATTCCTCTGAAGTTCAGGGTTTCTCTTTTGAAGGGAGCTCCAAATCAAAGAGCAATCCATTCATCTAAAGCAGTAGGCGAACCTCCTTTATTTTTAGCATCTGCTGCATTTTTCGCTATCAAGGATGCCATTTTAGCAGCGAGGAAGGAGACAGGACATGAGGGTTGGTTTGTTCTTGACAGTCCAGCAACTCCAGAGAGGATTCGAATGGCTTGTGCAGACGAGTTTACACAACCCTTTGCTGACTCAGAATTTCGTCCTAAACTGAGTGTATAA___ACATGTCATTCAGTGTAATAGAAATCAAACACTCTCGAGTATTTCCACTGAATAGAGATATGCTATAAATTTTAGAGCATGTTCCTGAAATCTAACTTCGTTGGAAATAATCATTGTTTAAGTTAGGTTAGCATTGTCAAAAATGAAATGGAAGAATTGCATTTCATTTTCTGGTATGTATATTCCTTTTATCGACTCTCGAGTAAAGTTTCGCTTTATTGATGGTGGTCACATGTTTTTGGATGGATCCTACTAGTAATGACATGTTATTGTTTAAGATATGCACTTGCATTTTAGTTTCCTAGCAAGAACGACATCAGGAATATTTTTCGATGGAATATCTATTTACTTGTTTATGTTATAGAAGTGGGCTTGTCAATATACACCATCCTTGATGTAAATCTATGCATCTAGTATAGAAGTGCTAGATTGATGTGTGTTA

Fln Alignment:

Contig2982___AVKTEAFLKGKPWTLQTLQGALQVLQHDIIIAENAPGGMVEFRQSLTRSFFFKFFLWISYNIRQKTQVLLGLPDSYKSAVDPYKRPSSKGVQSYECPINGTAVGLPVVHLSAKLQVTGEAEYADDVPMPSNGLHAALVLSKKPHARIRSLDDSAAKAVPGFQGFFTAKDVPGGNDIGPTVNDEELFASELVTCVGQVIGIVVADTYENAKIASKMIQVEYEELPAVLCIRDALRAGSFLPNCVRVLEEGDVDKCFSSGLCYKIIEGEVQIGGQEHFYLEPNSTLIWTADGGNEVHMISSSQAPQKHQKYVSHVLGLPMNKVVCKTKRLGGGFGGKETRSAFIAAAAAVPCYLLRRPIRITLDRDIDMQITGQRHAFLGKYKVGFSQEGKVLALDLEIYNNGGNSLDLSFSVLERAMFHSDNVYEIQNVRIKGNVCFTNLPSHTAFRGFGGPQGMLITENWIEHIARVLGKAPEEIKELNFQKEGYVLHYGQKLEQCRLQQVFNELKASCDFDTSRREVDKFNSLNRWKKRGVAMVPTKFGISFTTKFLNQAGALVQVYTDGTVLVTHGGVEMGQGLHTKVAQIAASALGISVNSVFISETSTDKVPNXXXXXXXXXXDMYGAAVLDACEQIKSRMAPVAAKNRHTSFAELAQACHMERIDLSAHGFHATPDIGFDWRIGKGKPFNYFTFGAAFAEVEVDTLTGDFHLREVDIVMDLGNSLNPAIDIGQVEGGFIQGLGWCVLEEVKWGDPAHQFVRPGHLFTQGPGTYKLPTVNDIPLKFRVSLLKGAPNQRAIHSSKAVGEPPXXXXXXXXXXIKDAILAARKETGHEGWFVLDSPATPERIRMACADEFTQPFADSEFRPKLSV
Q8GUQ8______________ARKTEEFLIGKNWNKDLLQDALKVIQSDVVIKEDAPGGMVEFRKSLTLSFFFKFFLWVSHNVNNANSAIETFPPSHMSAVQPVPRLSRIGKQDYETVKQGTSVGSSEVHLSARMQVTGEAEYTDDTPVPPNTLHAAFVLSKVPHARILSIDDSAAKSSSGFVGLFLAKDIPGDNMIGPIVPDEELFATDVVTCVGQVIGVVVADTHENAKTAAGKVDVRYEELPAILSIKEAINAKSFHPNTEKRLRKGDVELCFQSGQCDRVIEGEVQMGGQEHFYLEPNGSLVWTVDGGSEVHMISSTQAPQKHQKYVSHVLGLPMSKVVCKTKRIGGGFGGKETRSAFIAAAASVPSYLLNRPVKLILDRDVDMMITGHRHSFLGKYKVGFTNEGKILALDLEIYNNGGNSLDLSLSVLERAMFHSDNVYEIPHVRIVGNVCFTNFPSNTAFRGFGGPQGMLITENWIQRIAAELNKSPEEIKEMNFQVEGSVTHYCQTLQHCTLHQLWKELKVSCNFLKARREADEFNSHNRWKKRGVAMVPTKFGISFTTKFMNQAGALVHVYTDGTVLVTHGGVEMGQGLHTKVAQVAASAFNIPLSSVFVSETSTDKVPNASPTAASASSDMYGAAVLDACEQIIARMEPVASKHNFNTFTELVSACYFQRIDLSAHGFHIVPDLGFDWISGKGNAFRYYTYGAAFAEVEIDTLTGDFHTRAADIMLDLGYSLNPAIDVGQIEGAFVQGLGWVALEELKWGDAAHKWIKPGSLLTCGPGNYKIPSINDMPFNLNVSLLKGNPNTKAIHSSKAVGEPPFFLASSVFFAIKEAIKAARTEVGLTDWFPLESPATPERIRMACFDEFSAPFVNSDFYPNLSV

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
2168			33	66	0.997452
2210	25	75			0.996473
2212			25	75	0.996473
2213	75		25		0.996473
2339		62		37	1.0
2659		12		87	0.992554
2661	87			12	0.992554
2662	87	12			0.992554
2663			12	87	0.992554
2664	87			12	0.992554
2667		12	87		0.992554
2668	87	12			0.992554
2670	87			12	0.992554
2671			12	87	0.992554
2675	87		12		0.992554
2678	87	12			0.992554
2680		12		87	0.992554
2682		12		87	0.992554
2683	12			87	0.992554
2703		42		57	1.0
2839	11	11		77	0.968132

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain