SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2955

Length: 2147 nt

UniGene Fasta

>sp_v3.0_unigene2955
CCACTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGAGGCGAGGCAGCGCAGCTTCTAGATGACCTTAGTTGATAATATATATACCCGCCTGCTTCTATTTCCATCTGGGAATTAGAATTTCTGCATAATCGTTTCTTCTACGATTTCAAACCTATTTCAAATCGGCTTACTGGCTCTGATACCGAGCGGAAATTTGAGATCTCGTATTGGTTTTGTTTGAATTCGAAGGAAATGAGAGAAATTATCAGCATTCACATTGGTCAAGCGGGGATTCAGGTCGGGAATTCGTGCTGGGAGCTCTACTGTCTCGAGCATGGAATCCAGCCCGATGGTATGATGCCCAGCGATACGTCTGTGGGTGTTGGAGACGATGCGTTCAACACTTTTTTCAGTGAGACAGGAGCTGGCAAACACGTGCCGAGAGCTGTGTTCGTAGATCTGGAACCCACGGTCATTGACGAGGTTCGAACAGGGGCTTACCGCCAGCTCTTCCATCCTGAACAGTTGATCTCGGGTAAAGAAGACGCTGCCAACAACTTCGCTCGCGGCCATTACACTGTGGGGAAGGAGATTGTGGACCTCTGTCTAGATCGGGTGAGGAAGCTGGCCGATAACTGCACGGGTTTACAGGGTTTTTTGGTTTTTAATGCTGTTGGAGGTGGGACAGGATCTGGCCTAGGTTCCTTGCTTTTGGAGCGACTTTCTGTTGACTATGGCAAGAAATCAAAGCTTGGATTCACGATTTATCCTTCTCCTCAGGTTTCTACTGCAGTTGTGGAGCCCTACAACAGTGTCCTTTCAACACATTCTTTGCTTGAACACACAGATGTTGCAGTTCTTTTAGACAATGAAGCCATATATGACATTTGTAGAAGATCTTTGGATATTGAGAGGCCAACTTATACCAACTTGAATAGGTTGATCTCTCAGATCATATCCTCCCTGACAACATCTCTCAGGTTTGATGGGGCCATTAATGTGGATGTGACAGAGTTTCAGACCAATCTTGTACCATATCCTCGAATTCATTTTATGCTTTCTTCCTATGCTCCAGTAATCTCTGCAGAGAAAGCCTATCACGAGCAACTATCTGTTCCTGAGATTACAAATGCTGTGTTTGAACCCTCAAGCATGATGGCCAAGTGTGATCCAAGGCATGGGAAATACATGGCTTGTTGTCTCATGTACCGGGGGGATGTTGTGCCAAAAGATGTGAATGCAGCAGTAGCAACCATCAAGACTAAACGGACTGTTCAGTTTGTAGACTGGTGTCCCACAGGTTTCAAATGTGGCATCAATTACCAACCACCCACAGTGGTGCCTGGGGGAGACCTTGCCAAGGTGCAACGTGCTGTGTGCATGATCAGCAACAATACTGCTGTGGCTGAAGTCTTTTCTCGTATTGACCACAAGTTTGATTTGATGTATGCTAAACGTGCATTTGTCCATTGGTATGTTGGTGAGGGTATGGAAGAGGGTGAATTCTCTGAGGCTCGTGAAGACCTGGCTGCTTTGGAGAAGGATTATGAAGAAGTTGGGGCAGAGGCTTCTGATGAAGCTGATGATGGAGAAGAATACTAAACTTCTCTTTGCTCTGGTTCTTCTATTGGTTGAATTGGAATAAACTGTAAGAGTGGCTTGTATTGCCTTGTTCTATTTTGTAATTTTCTATTCTCTGATTCCAGTGTGCAGTGCTCACTGCACAAATTTTTATTTGTTAATATGTGCATGGCAGCAGGATTCTGTTTATCTAAAGTGTAGGCTCAATCCAACAAATTATGCTTCAGTCTGATGTGTGAAATCATAGTCTTCCACTTGTAGCTCACATCATTTTTTCTTGCCATCCAAAAATTAAGTTGTGACAAAATGGAAACACAGTCTTGACTTTGGTTCCATTCTCTCAGATATGATTTATCTTCTCCAGTTGCCAGGTTTATGTACCATGTACAGATATACTGATACACCAAAAAGGCATCAAACGTTTATAGTTGGCATACTGCCAGTAATGTGCAAGCATAAATAAGGTAAGCAAAATTGGACACATCCCTTTCTCTTTAGTATGCTACCACTTAATTGGCAATGGTATTACTATCATGAGTCACGACTGCATCACTGCATGCATTTTTGCAATGAGCAAAAGA

Ace file of the UniGene sp_v3.0_unigene2955

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Tubulin alpha-2/alpha-4 chain n=384 Tax=Eukaryota RepID=TBA2_ARATH	-	-	87%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Sma3	Putative uncharacterized protein	-	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G19780.1	TUA5 tubulin alpha-5 chr5:6687212-6688926 FORWARD LENGTH=450	98%
RefSeq	Arabidopsis thaliana	NP_197479.1	tubulin alpha-3/alpha-5 chain [Arabidopsis thaliana]	98%
RefSeq	Populus trichocarpa	XP_002303998.1	tubulin alpha-2 chain [Populus trichocarpa]	96%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PSN4

Fln msg:

Fln protein: MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTSVGVGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTTSLRFDGAINVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEASDEADDGEEY*

Protein Length: 451

Fln nts: CCACTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGAGGCGAGGCAGCGCAGCTTCTAGATGACCTTAGTTGATAATATATATACCCGCCTGCTTCTATTTCCATCTGGGAATTAGAATTTCTGCATAATCGTTTCTTCTACGATTTCAAACCTATTTCAAATCGGCTTACTGGCTCTGATACCGAGCGGAAATTTGAGATCTCGTATTGGTTTTGTTTGAATTCGAAGGAA_-_ATGAGAGAAATTATCAGCATTCACATTGGTCAAGCGGGGATTCAGGTCGGGAATTCGTGCTGGGAGCTCTACTGTCTCGAGCATGGAATCCAGCCCGATGGTATGATGCCCAGCGATACGTCTGTGGGTGTTGGAGACGATGCGTTCAACACTTTTTTCAGTGAGACAGGAGCTGGCAAACACGTGCCGAGAGCTGTGTTCGTAGATCTGGAACCCACGGTCATTGACGAGGTTCGAACAGGGGCTTACCGCCAGCTCTTCCATCCTGAACAGTTGATCTCGGGTAAAGAAGACGCTGCCAACAACTTCGCTCGCGGCCATTACACTGTGGGGAAGGAGATTGTGGACCTCTGTCTAGATCGGGTGAGGAAGCTGGCCGATAACTGCACGGGTTTACAGGGTTTTTTGGTTTTTAATGCTGTTGGAGGTGGGACAGGATCTGGCCTAGGTTCCTTGCTTTTGGAGCGACTTTCTGTTGACTATGGCAAGAAATCAAAGCTTGGATTCACGATTTATCCTTCTCCTCAGGTTTCTACTGCAGTTGTGGAGCCCTACAACAGTGTCCTTTCAACACATTCTTTGCTTGAACACACAGATGTTGCAGTTCTTTTAGACAATGAAGCCATATATGACATTTGTAGAAGATCTTTGGATATTGAGAGGCCAACTTATACCAACTTGAATAGGTTGATCTCTCAGATCATATCCTCCCTGACAACATCTCTCAGGTTTGATGGGGCCATTAATGTGGATGTGACAGAGTTTCAGACCAATCTTGTACCATATCCTCGAATTCATTTTATGCTTTCTTCCTATGCTCCAGTAATCTCTGCAGAGAAAGCCTATCACGAGCAACTATCTGTTCCTGAGATTACAAATGCTGTGTTTGAACCCTCAAGCATGATGGCCAAGTGTGATCCAAGGCATGGGAAATACATGGCTTGTTGTCTCATGTACCGGGGGGATGTTGTGCCAAAAGATGTGAATGCAGCAGTAGCAACCATCAAGACTAAACGGACTGTTCAGTTTGTAGACTGGTGTCCCACAGGTTTCAAATGTGGCATCAATTACCAACCACCCACAGTGGTGCCTGGGGGAGACCTTGCCAAGGTGCAACGTGCTGTGTGCATGATCAGCAACAATACTGCTGTGGCTGAAGTCTTTTCTCGTATTGACCACAAGTTTGATTTGATGTATGCTAAACGTGCATTTGTCCATTGGTATGTTGGTGAGGGTATGGAAGAGGGTGAATTCTCTGAGGCTCGTGAAGACCTGGCTGCTTTGGAGAAGGATTATGAAGAAGTTGGGGCAGAGGCTTCTGATGAAGCTGATGATGGAGAAGAATACTAA___ACTTCTCTTTGCTCTGGTTCTTCTATTGGTTGAATTGGAATAAACTGTAAGAGTGGCTTGTATTGCCTTGTTCTATTTTGTAATTTTCTATTCTCTGATTCCAGTGTGCAGTGCTCACTGCACAAATTTTTATTTGTTAATATGTGCATGGCAGCAGGATTCTGTTTATCTAAAGTGTAGGCTCAATCCAACAAATTATGCTTCAGTCTGATGTGTGAAATCATAGTCTTCCACTTGTAGCTCACATCATTTTTTCTTGCCATCCAAAAATTAAGTTGTGACAAAATGGAAACACAGTCTTGACTTTGGTTCCATTCTCTCAGATATGATTTATCTTCTCCAGTTGCCAGGTTTATGTACCATGTACAGATATACTGATACACCAAAAAGGCATCAAACGTTTATAGTTGGCATACTGCCAGTAATGTGCAAGCATAAATAAGGTAAGCAAAATTGGACACATCCCTTTCTCTTTAGTATGCTACCACTTAATTGGCAATGGTATTACTATCATGAGTCACGACTGCATCACTGCATGCATTTTTGCAATGAGCAAAAGA

Fln Alignment:

Contig2955___MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTSVGVGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXXXXRFDGAINVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
C0PSN4______________MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTSVGVGDDAFNTFFSETGAGKHVPRAVIVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTTSLRFDGAINVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY

SNPs (tot: 3)

Position	C %	G %	T %	Probability
1811	18		81	1.0
1867		87	12	0.992554
1978	33	66		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain