SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2948

Length: 1936 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene2948

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	UDP-glucose:salicylic acid glucosyltransferase [Nicotiana tabacum]	-	-	0.0	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Sma3	UDP-glucosyltransferase, putative	-	-	1.591e-23	-

Source	ECs	Term	Type	e value	Identity
Sma3	Indole-3-acetate beta-glucosyltransferase.	EC:2.4.1.121	-	3.3e-25	-
Sma3		EC:2.4.1.21-	-	2.588e-06	-

Source	Gene names
Sma3	At1g05670; At1g05680; At1g24100; At2g43840; CtGT12A; F3F20.12; F3F20.13; F3I6.2; GLT2; GSVIVT00003463001; GSVIVT00003464001; GSVIVT00003471001; GSVIVT00003476001; GSVIVT00004164001; GSVIVT00007895001; GSVIVT00013303001; GSVIVT00013305001; GSVIVT0001615300

Source	GOs	Term	Type	Identity
Sma3	transferase activity, transferring hexosyl groups	GO:0016758	Molecular Function	-
Sma3	UDP-glucosyltransferase activity	GO:0035251	Molecular Function	-
Sma3	thiohydroximate beta-D-glucosyltransferase activity	GO:0047251	Molecular Function	-
Sma3	UDP-glucose:4-aminobenzoate acylglucosyltransferase activity	GO:0080002	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	glucosinolate biosynthetic process	GO:0019761	Biological Process	-
Sma3	para-aminobenzoic acid metabolic process	GO:0046482	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Hydroxymethylglutaryl-CoA reductase, class I/II	IPR002202	-	0.0	-
Sma3	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G05675.1	UDP-Glycosyltransferase superfamily protein chr1:1701213-1702715 REVERSE LENGTH=453	45%
RefSeq	Arabidopsis thaliana	NP_001184915.1	UDP-Glycosyltransferase superfamily protein [Arabidopsis thaliana]	45%
RefSeq	Populus trichocarpa	XP_002334252.1	predicted protein [Populus trichocarpa]	48%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKT4

Fln msg: Overlapping hits, possible frame ERROR between 273 and 273,

Fln protein: MGMGYLMRQMEYSKPRVMVVPYPAQGHINPMLQFAxxARLKVKAMVTFVMTEASREDIFQAQDASISSQELHFETISDGLPLDFDRSKDFEMTMQMFRKMGVLSLTNLIERLDAQGNNICCIVYDSFLPWIPEVANKFNIPLAFFWTQSCAVYSIYYHFSRGLTIPVDGAGKTMDEIEIPGLPSLNVSELPSFLQPSNSYAFLLRVVMDQFDPLSEAKWVLGNSFEEIESEEINSVKSIAPIRTVGPLLPSAFLDAQNTSDTEYGAHLWKAAKCMDWLNTKEPASVVYVSFGSFGVLSKEQIHEIALGLKASGCSFIWVIRPPNSEECLPENFLYETSEQGLVVPWCYQLEVLSHASAAAFMTHCGWNSTLESLTLGVPILAVPQWTDQTTNSKYIGEKWKTGLRLHKRPADGLVGKEEVEKCIKMIMETEVGVELRENALRWKTLSREAMMEGGSSDKNIEEFVQEILGEEWRS*

Protein Length: 477

Fln nts: CAACCTCGTGTTAATAAATTAGCTATACGGGAAGATCCGTGTAGAGCCTCAGACAAGTGCGATTTTGAATGCTTGGAGCGGATCAGTCGAGAGCCTGCGACAAGTGCGAATTTGAATGGTCGGAGGCTCTGTGCGGCACTTATTCGTGGCGACTCTCTTGAATTT_-_ATGGGTATGGGATATTTAATGAGGCAGATGGAGTACAGCAAGCCTCGCGTTATGGTGGTGCCTTATCCAGCGCAAGGTCATATCAATCCCATGCTGCAGTTCGCCxxxxxxGCTCGTCTCAAAGTAAAGGCTATGGTCACGTTTGTCATGACGGAGGCCAGCCGTGAGGACATTTTTCAGGCACAAGATGCATCAATCTCCTCCCAGGAACTCCACTTTGAAACTATCTCTGACGGACTTCCGCTTGATTTCGACCGCTCCAAGGACTTTGAAATGACGATGCAGATGTTTCGAAAGATGGGAGTTCTCAGCTTAACAAATCTCATAGAAAGGCTGGACGCTCAAGGAAACAATATATGTTGCATCGTTTACGACTCCTTCCTTCCATGGATTCCTGAAGTTGCAAACAAGTTTAACATTCCTCTTGCCTTTTTCTGGACACAATCCTGTGCAGTTTACTCCATCTATTACCATTTTAGCAGAGGATTGACCATCCCGGTAGACGGAGCAGGGAAAACGATGGACGAGATAGAAATCCCAGGATTGCCATCGCTGAACGTCTCGGAGTTGCCGAGTTTTCTGCAACCTTCGAATTCCTACGCCTTTCTGCTGCGAGTAGTAATGGATCAGTTCGATCCATTGTCAGAGGCAAAATGGGTTCTGGGAAATTCATTTGAGGAGATTGAATCCGAGGAAATAAACTCAGTGAAGAGTATAGCTCCGATTCGCACTGTAGGTCCGCTTCTACCCTCGGCTTTCTTGGACGCACAGAATACCAGCGACACAGAGTATGGTGCACATTTGTGGAAAGCCGCAAAGTGCATGGATTGGCTGAATACGAAGGAACCTGCAAGCGTTGTGTATGTTTCCTTTGGAAGCTTCGGAGTTCTATCCAAAGAGCAAATTCATGAAATAGCCCTTGGGCTGAAAGCCAGTGGGTGCTCTTTCATATGGGTTATTCGTCCGCCCAACAGTGAAGAATGCCTGCCAGAGAATTTCTTGTACGAAACTTCCGAGCAAGGGCTAGTCGTTCCTTGGTGTTATCAGCTGGAAGTGCTCTCTCATGCCTCTGCCGCTGCATTTATGACGCACTGTGGATGGAACTCGACTCTGGAAAGCCTCACCTTGGGTGTCCCCATTTTGGCGGTTCCTCAGTGGACCGACCAGACGACTAATTCCAAATACATCGGAGAGAAGTGGAAGACGGGATTGAGATTGCATAAACGACCAGCAGACGGATTAGTGGGGAAGGAGGAAGTCGAGAAATGTATCAAGATGATTATGGAAACTGAGGTGGGCGTTGAGCTGAGAGAAAACGCTCTGCGGTGGAAGACATTATCGAGGGAAGCAATGATGGAAGGCGGATCTTCCGATAAGAATATCGAAGAATTCGTTCAAGAGATTCTTGGCGAAGAATGGCGATCATAA___TTGTCTGTTTCAGGATTTACTATTTCATTGCCTGCTGAAATAGTCATTTCTTGAACAAAGATGATAAAAAAAAGAGTGTGAGAAAACACCAGTGAATTGTAGTTGTGAACCAGGATGAATTATGGGATGGTCAGCACAATCGTTTTCGAATCCACCATTCGTGAAGGGTAATCGTGGTATCGTTTTCTCTGGATGAATCCTTAGTATTGGTGGATGCCAATAGAATTTATTTGCTTTCATCAATTTCCTGTCCTTCAATATCCGAGACAGCGAACACTGCTTTGAAAGCATAATGTTTTTCTCCTGATTTCCTGTTTTAAAATAGTAAAGAAAATCCAAGGGAG

Fln Alignment:

Contig2948___QMEYSKPRVMVVPYPAQGHINPMLQFxxRLKVKA-MVTFVMTEASREDIFQAQDA----SISSQELHFETISDGLPLDFDRSKDFEMTMQMFRKMGVLSLTNLIERLDAQGNNICCIVYDSFLPWIPEVANKFNIPLAFFWTQSCAVYSIYYHFSRGLTIPVDGAGKTMDEIEIPGLPSLNVSELPSFLQPSNSYAFLLRVVMDQFDPLSEAKWVLGXXXXXXXXXXXXXVKSIAPIRTVGPLLPSAFLDAQNTSDTEYGAHLWKAAKCMDWLNTKEPAXXXXXXXXXXXXXXKEQIHEIALGLKASGCSFIWVIRPP------NSEECLPENFLYETSEQGLVVPWCYQLEVLSHASAAAFMTHCGWNSTLESLTLGVPILAVPQWTDQTTNSKYIGEKWKTGLRLHKRPADGLVGKEEVEKCIKMIMETEVGVELRENALRWKTLSREAMMEGGSSDKNIEEFVQEILGEEWRS*LS
B8LKT4______________ELEYSKPHVLVMPYPAQGHINPMLLFxxRLASKQIMVTFVTTEASRERMLKAQDAVPGASNSSTEVQFETISDGLPLDFDRSKDVDLTLDMLCRIGGLTLANLIERLNAQGNNISCIVYDSFLHWVPEVAKKFKIPVAFFWTQSCAVYSIYYNFNRGLANLRDETGKLVDAIEIPGLPLLKVSDLPSFLQPSNAYESLLRLVMDQFKPLPEATWVLGNSFSELESEEINSMKSIAPLRTVGPLIPSAFLDGRNPGDTDCGAHLWKTTNCMDWLNTKEPASVVYVSFGSLAVLSKEQIHEIALGLKASGYSFIWVIRPPSSKGETNSEENLPPGFLNETSEQGLVVPWCHQLQVLSHASVGAFMTHCGWNSTLESLSLGVPMLALPQKSDQTTNSSYIAEKWKAGMRLNKRSANGLVGKEEVEKCIKIVMESQLGAELRKNALQWKKLSREAMVKGGSSDKNIQEFVEEIIDRARPSSLS

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
1425	14		85		0.993533
1493	14		85		0.993533
1611	16		83		0.994512
1613	50			50	1.0
1614		16		83	0.994512
1618	12	87			0.992554
1620	75		25		1.0
1624		87	12		0.992554
1628	12		87		0.992554
1643	12	87			0.992554
1660	20			80	0.995493
1662	80		20		0.995493
1663	20		80		0.995493
1669	25	75			0.996473
1670	25	75			0.996473
1671			25	75	0.996473
1679			25	75	0.996473
1680	25	75			0.996473
1681	25	75			0.996473
1682	25		75		0.996473
1683	25			75	0.996473
1686		25		75	0.996473
1688	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain