SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2935

Length: 4364 nt

UniGene Fasta

>sp_v3.0_unigene2935
CTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGCGCCAGCGACAGGACAAGCAAACACAGCATTAAAAATTACAGACAGGGCCGAGCTATTCTCAGGTCGCAGAGAGCCAGGAGGCGAGCTAAGGAAACACGGGAACGCAAAGCGACAGAGGGACTAAAAGGATTGGATTCGGCCTTTAGCTTGTCAGAGCTGCTTTTTAGCTGTAGAGGAATGCCTGGATTGTGTATTTTGGCCATGATTTAGGGTTTATGCTGTGTTCGAGGGTTTGAGGCCAGGTGAAGGATTTCGACTTCCGAAGCAAACATTAAAAGTATTCCGACAGCAGGTACCCTGCGATTTTGGCTTGCCGGAAACTCGTAAAAGAACGCCATGGCCGAAAAGCTTCTGGACCTTTCACAGCCCATTGACGTCCCCCTTCTTGATGCTACTGTTGCGGCTTTCTACGGCACGGGATCTAAAGAAGAGAGAGCAGCAGCAGAGCGGATATTGCGGGATTTACAGGCTCATCCTGATACATGGCTGCAAGTTGTTAGCATTCTGCAGAACTCGCAGAATCTGAATACAAAGTTCTTTTCACTTCAGGTGATTGAAGGTGTAATCAAGTATCGATGGAATGCTTTGCCGGTTGAACAACGGGATGGGATAAAGAATTACATATCAGATCTCATTGTTCAGCTTTCAAGTAACGAAGCTTCTTTTCGCAGTGAGAGGCTCTATGTAAACAAGCTTAATGTAATCTTGGTTCAGGTGTTGAAGCATGAATGGCCAAGTAGATGGCCTGGATTTATTCCTGATCTTGTTTCAGCTGCTAAGAGTAGTGAAACAATATGTGAAAATTGCATGGCAATTTTGAAGCTCCTCAGTGAAGAAGTTTTTGACTTTTCTAGAGGTGAGATGACACAGCAGAAAATAAAAGAACTCAAGCAGTCCTTGAACAGTGAGTTTCGGCTCATACATGAGTTATGTCTTTATGTATTGTCAATATCACAGCGTCCTGAACTTATAAGGGCGACTTTGGCCACACTGCACGCTTTTTTATCATGGATCCCTCTTGGTTATATTTTTGAGTCTCCTCTGCTCGATACCCTACTAAATCTTTTTCCTGCGGCAGCCTATAGAAATTTGGCTCTGCAGTGCTTAACCGAGGTTGCAGCACTTAATTTTGGAGATTTTTATGATGCACAATTTGTTAAGCTTTATACTTTCTTTATGGCGCAGTTGCAGAACATACTTCCACCAGGGACAAATATCCCAGAAGCCTATGCAAATGGCTCCACTGAAGAACAGTCATTTATTCAAAACTTGGCACTCTTCTTCACCTCATTCTACAAGTCACACATTCGCGTACTTGAAACTACCCCTGAAAATCGGGCAGCACTTCTTATGGGTCTTCAGTACTTAATCAGTATTTCCTATGTTGATGATACTGAAGTTTTCAAGGTTTGCCTGGATTATTGGAATACCTTGGTTTCTGAACTTTTTGAAGCACATCATTCTTCTGACAATCCTGCTGCTACCGCCAATGTTATGGGTCTCCAGATTCCATTACTTTCAGGCATGGTTGATGGGCTAGGTTCGCAGATTACACAACGAAGGCAGTTATATGCTGGGCCAATGTCAAAACTGAGGATGCTGATGATTTGTCGTATGGCTAAACCAGAAGAGGTTCTGATTGTAGAAGATGAGAATGGCAATATTGTTAGAGAGACTATGAAAGATAATGATGTCCTTGTCCAATACAAGGTAATGAGGGAGACCTTAATTTACTTATCTCATCTTGATCATGAAGATACAGAACAACAGATGTTGAAAAAACTTAGTAAGCAACTTAATGGGGAAGATTGGACATGGAACAACTTGAACACACTCTGCTGGGCAATTGGCTCCATTTCAGGTTCTATGATGGAGGACCAGGAAAATCGGTTTTTAGTCACAGTAATTCGTGATTTACTCAACCTATGTGAAGTCACCAAGGGAAAGGACAATAAAGCTGTAATTGCAAGTAACATCATGTATGTAGTGGGACAGTACCCAAGATTTTTGAGGGCACATTGGAAATTTTTGAAAACTGTGGTCAACAAACTTTTTGAATTCATGCATGAAACTCACCCGGGAGTGCAGGACATGGCTTGTGATACTTTTTTAAAGATAGTGCAAAAATGCAAGAGGAAGTTTGTGGTTGTCCAGGTTGGAGAGGCAGAGCCATTTGTTTCTGAACTTTTAACAGGCCTTGCGTCAACTGTTGCTGATCTTCAGCCGCATCAGATACATACATTTTATGAATCTGTGGGGCATATGATTCAAGCGGAATCAGATCCTCAAAAGCGAGATGAATATCTTCAAAGGCTAATGGAGCTTCCAAATCAGAAATGGGCAGAAATCATAGGCCAAGCCAGGCAAAGTGTTGATTACCTAAAGGATCAGGATGTCATTAGAACGGTGCTGAACATTATGCAGACAAACACAAGCGTGGCTCTTTCTCTTGGGACATTCTTTCTACCGCAGATATCACTAATTTTCTTAGACATGCTAAATGTTTACAGAATGTATAGTGAACTCATATCTAACAGCATAGCTGAAGGTGGTCCATTTGCTTCTAAAACATCATATGTGAAGCTACTGAGATCTGTCAAGAGGGAGACCCTCAAATTGATTGAAACATTTGTAGATAAAGCTGAAGATCAACCACATATAGGGAAGCAATTTGTACAACCTATGATGGATCCTATACTTGGTGACTATGCACGGAATGTGCCTGATGCTAGAGAGTCTGAAGTTCTATCATTATTTGCAACTATAATAAACAAGTATAAAGTTGTTATGATGGAGGATGTACCACGTATTTTTGAAGCTGTTTTTGCTTGCACATTAGAGATGATTACTAAAAATTTTGAGGATTATCCGGAACACCGATTGAAATTCTTCTCATTACTCCATGCGATTGCTACTTACTGTTTCCGTGCTTTGTTTGCATTATCAAGTCAGCAACTGAAGCTTGTCATGGATTCCATAATATGGGCCTTTCGCCATACTGAAAGAAATATTGCTGAGACTGGGCTTTACTTGCTTCTTGAGATGCTGAAGAATTTCCAGATATCTGAATTTTGCAATCAGTTCCACCAAAGCTATTTCTTGACAATTGAGCAAGAAATATTTGCTGTTTTAACTGATACATTCCACAAGCCAGGATTTAAACACCATGTCCATATTCTACAGCATTTGTTTTGTCTGGTGGATTCTGGTGCTTTGACCCAGCCTCTATGGGATATTAATGCACTTGGCCTAACTGCCTATCCAAGTAATACAGTTTTTGTTCGAGAGTATACCATCAAGCTCTTAGGAACATCATTTCCTAACATGACAGTCACTGAGGTTACACAATTTGTGGATGGACTATTTGAGTCACGGAATGATCTTTCCAGTTTCAAGAACCACATTCGAGACTTCCTTGTCCAATCTAAAGAGTTCTCTGCTCAGGATAACAAAGATCTCTATGCAGAAGAAGCAGCTGCGCAAAGAGAAAGAGAACGCCAAAGAATGCTTAGCATTCCTGGGCTTATTGCACCCAGTGAACTACAAGATGAAATGTTAGACACATAACAGAGTGAGCTGGGAGTATATATTTACCATTTAGTCCCATCACTAGCATTATTTCTTTACTCATCAGATTCATTTTTGAGGGCACAATCCAAATTGTTGACAGTGATTCATCCATTAAAGATGAGTTCCGAGGTTGCACCCTTTGTGTAGCGAGAGCTATCTGGAACTACTAGTGATACTTCTGAGCAGAGCTGCAGATGCTCTGCAGGTTCAGGATCTTTTTCCATGGTAAAATTTCCTTGCTTTGTGGTGTCTTACAGATCCCCTCCAGTAGTTGAAGTAGGGGTAGCTCTCGGGGCATCGGTAAGCCCTTCTGGCTGGAGTTGGTTACTCCTTTAGCCAGGTAAAATTTTAGAAACTCCATACCGAGTAAGAAGTGGGATGTGTCCTGACATGTTTATTGTGTGATATATCTGGGTTGTCTCTATATGTGTTCCCGTCTACTCCAGTGAGCCACCTGAAAACTAACTATGATGATATTTTCCTAGGAAGGATTTTTGATATTTTCTAATCCTTCGGAAGATTGTCAGGCAAACCTTTAATTTTTGTGTTTGTAAGCTATTCATCAGTTATGTGCTTTTCATTTGTCTTGATTCTCCCCGCATGTTTTCCTGCTTTCTTACTAATTTAAGAATCTCTGTTTTTGTAATTTATCCAGTCGAGGATTATTTTAAAATGCCAAGGTATTGTATACTGATGCTTTGCTGTTGAATCTCTTGTAGCATGATAACTTCTTAATTTTATAAACATTTGATTGCG

Ace file of the UniGene sp_v3.0_unigene2935

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	exportin 1A [Arabidopsis thaliana] emb\|CAB56597.1\| Exportin1 (XPO1) protein [Arabidopsis thaliana] emb\|CAB89280.1\| Exportin1 (XPO1) protein [Arabidopsis thaliana] emb\|CAC01715.1\| Exportin1 (XPO1) protein [Arabidopsis thaliana] gb\|AAL07205.1\| putative expo	-	-	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Sma3	Putative uncharacterized protein	-	-	-

Source	Gene names
Sma3	GSVIVT00014046001; VITISV_008353;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	nuclear pore	GO:0005643	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	protein transporter activity	GO:0008565	Molecular Function	-
Sma3	protein import into nucleus, docking	GO:0000059	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Exportin-1/Importin-beta-like	IPR013598	-	-
Sma3	CRM1 C-terminal domain	IPR014877	-	-
Sma3	Importin-beta, N-terminal	IPR001494	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G17020.1	XPO1A, ATCRM1, ATXPO1, XPO1, HIT2 exportin 1A chr5:5594904-5602467 FORWARD LENGTH=1075	83%
RefSeq	Arabidopsis thaliana	NP_197204.1	exportin 1A [Arabidopsis thaliana]	83%
RefSeq	Populus trichocarpa	XP_002319892.1	predicted protein [Populus trichocarpa]	87%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AD49

Fln msg:

Fln protein: MDYLSHGMIFPVSRTTFETSLSNLKSSLLRITKISMQKKQLRKEKENAKECLAFLGLLHPVNYKMKC*

Protein Length: 69

Fln nts: CTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGCGCCAGCGACAGGACAAGCAAACACAGCATTAAAAATTACAGACAGGGCCGAGCTATTCTCAGGTCGCAGAGAGCCAGGAGGCGAGCTAAGGAAACACGGGAACGCAAAGCGACAGAGGGACTAAAAGGATTGGATTCGGCCTTTAGCTTGTCAGAGCTGCTTTTTAGCTGTAGAGGAATGCCTGGATTGTGTATTTTGGCCATGATTTAGGGTTTATGCTGTGTTCGAGGGTTTGAGGCCAGGTGAAGGATTTCGACTTCCGAAGCAAACATTAAAAGTATTCCGACAGCAGGTACCCTGCGATTTTGGCTTGCCGGAAACTCGTAAAAGAACGCCATGGCCGAAAAGCTTCTGGACCTTTCACAGCCCATTGACGTCCCCCTTCTTGATGCTACTGTTGCGGCTTTCTACGGCACGGGATCTAAAGAAGAGAGAGCAGCAGCAGAGCGGATATTGCGGGATTTACAGGCTCATCCTGATACATGGCTGCAAGTTGTTAGCATTCTGCAGAACTCGCAGAATCTGAATACAAAGTTCTTTTCACTTCAGGTGATTGAAGGTGTAATCAAGTATCGATGGAATGCTTTGCCGGTTGAACAACGGGATGGGATAAAGAATTACATATCAGATCTCATTGTTCAGCTTTCAAGTAACGAAGCTTCTTTTCGCAGTGAGAGGCTCTATGTAAACAAGCTTAATGTAATCTTGGTTCAGGTGTTGAAGCATGAATGGCCAAGTAGATGGCCTGGATTTATTCCTGATCTTGTTTCAGCTGCTAAGAGTAGTGAAACAATATGTGAAAATTGCATGGCAATTTTGAAGCTCCTCAGTGAAGAAGTTTTTGACTTTTCTAGAGGTGAGATGACACAGCAGAAAATAAAAGAACTCAAGCAGTCCTTGAACAGTGAGTTTCGGCTCATACATGAGTTATGTCTTTATGTATTGTCAATATCACAGCGTCCTGAACTTATAAGGGCGACTTTGGCCACACTGCACGCTTTTTTATCATGGATCCCTCTTGGTTATATTTTTGAGTCTCCTCTGCTCGATACCCTACTAAATCTTTTTCCTGCGGCAGCCTATAGAAATTTGGCTCTGCAGTGCTTAACCGAGGTTGCAGCACTTAATTTTGGAGATTTTTATGATGCACAATTTGTTAAGCTTTATACTTTCTTTATGGCGCAGTTGCAGAACATACTTCCACCAGGGACAAATATCCCAGAAGCCTATGCAAATGGCTCCACTGAAGAACAGTCATTTATTCAAAACTTGGCACTCTTCTTCACCTCATTCTACAAGTCACACATTCGCGTACTTGAAACTACCCCTGAAAATCGGGCAGCACTTCTTATGGGTCTTCAGTACTTAATCAGTATTTCCTATGTTGATGATACTGAAGTTTTCAAGGTTTGCCTGGATTATTGGAATACCTTGGTTTCTGAACTTTTTGAAGCACATCATTCTTCTGACAATCCTGCTGCTACCGCCAATGTTATGGGTCTCCAGATTCCATTACTTTCAGGCATGGTTGATGGGCTAGGTTCGCAGATTACACAACGAAGGCAGTTATATGCTGGGCCAATGTCAAAACTGAGGATGCTGATGATTTGTCGTATGGCTAAACCAGAAGAGGTTCTGATTGTAGAAGATGAGAATGGCAATATTGTTAGAGAGACTATGAAAGATAATGATGTCCTTGTCCAATACAAGGTAATGAGGGAGACCTTAATTTACTTATCTCATCTTGATCATGAAGATACAGAACAACAGATGTTGAAAAAACTTAGTAAGCAACTTAATGGGGAAGATTGGACATGGAACAACTTGAACACACTCTGCTGGGCAATTGGCTCCATTTCAGGTTCTATGATGGAGGACCAGGAAAATCGGTTTTTAGTCACAGTAATTCGTGATTTACTCAACCTATGTGAAGTCACCAAGGGAAAGGACAATAAAGCTGTAATTGCAAGTAACATCATGTATGTAGTGGGACAGTACCCAAGATTTTTGAGGGCACATTGGAAATTTTTGAAAACTGTGGTCAACAAACTTTTTGAATTCATGCATGAAACTCACCCGGGAGTGCAGGACATGGCTTGTGATACTTTTTTAAAGATAGTGCAAAAATGCAAGAGGAAGTTTGTGGTTGTCCAGGTTGGAGAGGCAGAGCCATTTGTTTCTGAACTTTTAACAGGCCTTGCGTCAACTGTTGCTGATCTTCAGCCGCATCAGATACATACATTTTATGAATCTGTGGGGCATATGATTCAAGCGGAATCAGATCCTCAAAAGCGAGATGAATATCTTCAAAGGCTAATGGAGCTTCCAAATCAGAAATGGGCAGAAATCATAGGCCAAGCCAGGCAAAGTGTTGATTACCTAAAGGATCAGGATGTCATTAGAACGGTGCTGAACATTATGCAGACAAACACAAGCGTGGCTCTTTCTCTTGGGACATTCTTTCTACCGCAGATATCACTAATTTTCTTAGACATGCTAAATGTTTACAGAATGTATAGTGAACTCATATCTAACAGCATAGCTGAAGGTGGTCCATTTGCTTCTAAAACATCATATGTGAAGCTACTGAGATCTGTCAAGAGGGAGACCCTCAAATTGATTGAAACATTTGTAGATAAAGCTGAAGATCAACCACATATAGGGAAGCAATTTGTACAACCTATGATGGATCCTATACTTGGTGACTATGCACGGAATGTGCCTGATGCTAGAGAGTCTGAAGTTCTATCATTATTTGCAACTATAATAAACAAGTATAAAGTTGTTATGATGGAGGATGTACCACGTATTTTTGAAGCTGTTTTTGCTTGCACATTAGAGATGATTACTAAAAATTTTGAGGATTATCCGGAACACCGATTGAAATTCTTCTCATTACTCCATGCGATTGCTACTTACTGTTTCCGTGCTTTGTTTGCATTATCAAGTCAGCAACTGAAGCTTGTCATGGATTCCATAATATGGGCCTTTCGCCATACTGAAAGAAATATTGCTGAGACTGGGCTTTACTTGCTTCTTGAGATGCTGAAGAATTTCCAGATATCTGAATTTTGCAATCAGTTCCACCAAAGCTATTTCTTGACAATTGAGCAAGAAATATTTGCTGTTTTAACTGATACATTCCACAAGCCAGGATTTAAACACCATGTCCATATTCTACAGCATTTGTTTTGTCTGGTGGATTCTGGTGCTTTGACCCAGCCTCTATGGGATATTAATGCACTTGGCCTAACTGCCTATCCAAGTAATACAGTTTTTGTTCGAGAGTATACCATCAAGCTCTTAGGAACATCATTTCCTAACATGACAGTCACTGAGGTTACACAATTTGTGG_-_ATGGACTATTTGAGTCACGGAATGATCTTTCCAGTTTCAAGAACCACATTCGAGACTTCCTTGTCCAATCTAAAGAGTTCTCTGCTCAGGATAACAAAGATCTCTATGCAGAAGAAGCAGCTGCGCAAAGAGAAAGAGAACGCCAAAGAATGCTTAGCATTCCTGGGCTTATTGCACCCAGTGAACTACAAGATGAAATGTTAG___ACACATAACAGAGTGAGCTGGGAGTATATATTTACCATTTAGTCCCATCACTAGCATTATTTCTTTACTCATCAGATTCATTTTTGAGGGCACAATCCAAATTGTTGACAGTGATTCATCCATTAAAGATGAGTTCCGAGGTTGCACCCTTTGTGTAGCGAGAGCTATCTGGAACTACTAGTGATACTTCTGAGCAGAGCTGCAGATGCTCTGCAGGTTCAGGATCTTTTTCCATGGTAAAATTTCCTTGCTTTGTGGTGTCTTACAGATCCCCTCCAGTAGTTGAAGTAGGGGTAGCTCTCGGGGCATCGGTAAGCCCTTCTGGCTGGAGTTGGTTACTCCTTTAGCCAGGTAAAATTTTAGAAACTCCATACCGAGTAAGAAGTGGGATGTGTCCTGACATGTTTATTGTGTGATATATCTGGGTTGTCTCTATATGTGTTCCCGTCTACTCCAGTGAGCCACCTGAAAACTAACTATGATGATATTTTCCTAGGAAGGATTTTTGATATTTTCTAATCCTTCGGAAGATTGTCAGGCAAACCTTTAATTTTTGTGTTTGTAAGCTATTCATCAGTTATGTGCTTTTCATTTGTCTTGATTCTCCCCGCATGTTTTCCTGCTTTCTTACTAATTTAAGAATCTCTGTTTTTGTAATTTATCCAGTCGAGGATTATTTTAAAATGCCAAGGTATTGTATACTGATGCTTTGCTGTTGAATCTCTTGTAGCATGATAACTTCTTAATTTTATAAACATTTGATTGCG

Fln Alignment:

Contig2935___MDYLSHGMIFPVSRTTFETSLSNLKSSLLRITKISMQKKQLRKEKENAKECLAFLGLLHPVNYKMKC*THNRVSWEYIFTI
D5AD49______________MDYLSLGMIFLVLRTTFETSLSNLKSSLLRITKIFMQKKQLHKEKESANECLAFLDLLHPANYKMKCWIHNRESWEYIITI

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
608	25		75		0.996473
770			80	20	0.995493
2446	10		90		0.90298
2448			90	10	0.90298
2449		90	10		0.90298
2450			10	90	0.90298
2658		22	77		0.999999
2776		14		85	0.993533
2814	11		88		0.923564
2816	88		11		0.923564
2931	11	88			0.923564
2933		88	11		0.923564
2934	88		11		0.923564
2966	11		88		0.923564
2997	11		88		0.923564
3048		10		90	0.90298
3203	87		12		0.992554
3343		16		83	0.999991
4051			10	90	0.999898
4052		90		10	0.999898
4059		10	90		0.999898
4061		90		10	0.999898
4062	90		10		0.999898
4063		90	10		0.999898
4067	80	10			0.99967
4069	90	10			0.999898
4070	90			10	0.999898
4190	14			85	0.993533
4191	14			85	0.993533
4192	14			85	0.993533
4193	14		85		0.993533
4194	14			85	0.993533
4195	14	85			0.993533
4302		20	80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain