SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2914

Length: 1703 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene2914

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	end binding protein 1C [Arabidopsis thaliana] dbj\|BAB09646.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAM65311.1\| microtubule-associated protein EB1-like protein [Arabidopsis thaliana] dbj\|BAD43258.1\| unknown protein [Arabidopsis thaliana] gb\|AB	-	-	0.0	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%
Sma3	Microtubule-associated protein EB1-like protein	-	-	6.349e-09	-

Source	Gene names
Sma3	At3g47690; At5g62500; At5g62500/K19B1_11; At5g67270; CHLREDRAFT_194209; EB1; GSVIVT00019563001; GSVIVT00037000001; H0423H10.8; LOC_Os10g35580; MICPUCDRAFT_68917; MICPUN_62721; OSJNBa0063C18.9; OSJNBa0078O01.4; OSJNBb0079B02.14; OSTLU_43364; Os04g0642100;

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	microtubule organizing center	GO:0005815	Cellular Component	-
Sma3	spindle	GO:0005819	Cellular Component	-
Sma3	spindle microtubule	GO:0005876	Cellular Component	-
Sma3	phragmoplast	GO:0009524	Cellular Component	-
Sma3	preprophase band	GO:0009574	Cellular Component	-
Sma3	cortical microtubule, transverse to long axis	GO:0010005	Cellular Component	-
Sma3	microtubule binding	GO:0008017	Molecular Function	-
Sma3	thigmotropism	GO:0009652	Biological Process	-
Sma3	positive gravitropism	GO:0009958	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Calponin homology domain	IPR001715	-	0.0	-
Sma3	EB1, C-terminal	IPR004953	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G67270.1	ATEB1C, EB1C, ATEB1H1 end binding protein 1C chr5:26840248-26841984 REVERSE LENGTH=329	55%
RefSeq	Arabidopsis thaliana	NP_201528.1	end binding protein 1C [Arabidopsis thaliana]	55%
RefSeq	Populus trichocarpa	XP_002307285.1	predicted protein, partial [Populus trichocarpa]	63%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUA3

Fln msg: your sequence is longer than subject: 360 - 329

Fln protein: MATNIGMMDSAYFVGRNELLAWINTTLQLSLCKVEEAASGAVQCQLMDAVHPGVVPMHKVNFDAKTEYEMIQNYKVLQDVFNKLKINKYIDVNKLVKGRPLDNLEFMQWLKRYCDSVNGGVMNSYNALERRESCKGGREVNKKAAPVNPSSKGSALGSKTATVAGSRRNDPSVPVANVGTKHSRMGSNAASAGYVSAPFQTTATEPPFYGSSTPNIPPVTPAQVQVLNEQITELKLSVDSLEKERDFYFAKLRDIEILCQNPDVEPLPIVSAIQRILYAADDSPAVIAEAQAIIYRSSNQPDENDENKARREINKRKSAGTPEVEDAVKSSLSPRQRRNSCENSNSADIYQSTSPLKMR*

Protein Length: 361

Fln nts: CTGTGCAAATATTAGCAACGTCTCTGTTGCCATGCCGGTTGCTCTTCAAGCAATCCTCGCACTTTTCCCTGTCTCTGCTCTCCTTCCGCTTGAATCTGGTCAATCCATTCACCCCATCAATCTCTCTGTGGCGTAGCCGAGCAGACCAGAGCATTGATTGGATTGGATTGGGTTGCAGGATTTGAAGGAGT_-_ATGGCCACTAACATTGGAATGATGGACTCGGCCTACTTCGTTGGAAGGAACGAGCTCCTTGCATGGATCAACACGACTCTGCAACTCTCCCTCTGCAAAGTTGAAGAGGCTGCTTCTGGAGCAGTTCAATGTCAACTTATGGATGCTGTACACCCCGGTGTGGTTCCCATGCACAAGGTCAATTTTGATGCAAAGACAGAGTATGAGATGATTCAAAATTACAAAGTGCTGCAGGACGTGTTCAACAAGCTGAAGATTAACAAGTACATTGATGTTAACAAACTAGTAAAGGGGCGCCCACTGGACAATCTAGAATTCATGCAATGGTTAAAGAGATACTGTGATTCGGTAAATGGTGGAGTCATGAATAGTTACAATGCACTTGAACGGAGAGAGTCTTGCAAAGGTGGAAGAGAAGTTAACAAGAAGGCAGCTCCAGTAAACCCTTCAAGCAAGGGCAGTGCACTGGGGTCTAAAACGGCCACAGTTGCTGGCTCTCGGAGAAATGATCCTTCAGTTCCAGTTGCGAATGTAGGGACTAAACATTCCAGGATGGGGTCAAATGCTGCTAGCGCTGGATATGTGTCTGCACCCTTCCAAACAACTGCAACTGAACCACCGTTTTATGGGTCTTCAACGCCCAACATTCCCCCTGTGACCCCAGCACAGGTTCAGGTTCTAAACGAGCAGATCACAGAGTTGAAGCTTTCGGTAGACAGCTTAGAGAAGGAAAGGGACTTTTACTTTGCAAAGCTGAGGGATATAGAAATACTTTGTCAAAATCCAGATGTTGAACCATTACCTATAGTTTCAGCAATACAGAGGATTCTATATGCTGCGGATGATAGCCCAGCTGTAATTGCTGAGGCACAAGCAATAATATACAGGTCATCCAATCAACCTGATGAAAACGATGAGAACAAGGCAAGGAGAGAGATCAACAAACGTAAATCAGCAGGGACACCTGAGGTGGAAGATGCTGTGAAGTCCAGCCTTTCTCCTAGACAGCGACGGAACTCATGTGAAAACTCCAACAGTGCAGATATTTACCAAAGTACTTCGCCTTTGAAGATGCGTTAA___TCAGATGATAAAATAATTTCCTATCCGATTCAATATCTGGAGGAATCCTATCAGCACTGGTATGATCCATGCAGAGAGACCTCTTGTTTCACTGGATGGAGATAGGCTGCAAGGATTGGGCAAAATTCTGCTCCGAACAAATAGTTTGTCATGAGAAAATGTTCTCTTTTAATTGTTCTAATGCAATTGCTGTCGATAAGATATTAGTTTAGTGATATGCCAGTGTCAAATGGTTAACATGATTTATCAGATTTGCTGAGCTTAAATTCAATTGAAATCAGGAACCATGATACTACCTTGCAGGTTCTCATAATAGATTTATATTCTTCTATTCTTCTAGGTCCTAATTGTTTTTTAAATAAAATATGTTGATGTTTTCTTGGGGATTTGTCAACCTTCAAATTAAAGCTCGACAGTGCCCTCAGGAAAATT

Fln Alignment:

Contig2914___ATNIGMMDSAYFVGRNELLAWINTTLQLSLCKVEEAASGAVQCQLMDAVHPGVVPMHKVNFDAKTEYEMIQNYKVLQDVFNKLKINKYIDVNKLVKGRPLDNLEFMQWLKRYCDSVNGGVMNSYNALERRESCKGGREVNKKAAPVNPSSKGSALGSKTATVAGSRRNDPSVPVANVGTKHSRM---GSNAASAGYVSAPFQTTATEPPFYGSSTP--NIPPVTPAQVQVLNEQITELKLSVDSLEKERDFYFAKLRDIEILCQNPDVEPLPIVSAIQRILYAADDSPAVIAEAQAIIYRSSNQPDENDENKARREINKRKSAGTPEVEDAVKSSLSPRQRRNSCENSN
A9NUA3______________ATNIGMMDAAYFVGRNEILHWINTTLSLHLHKIEDAASGAVHRQLMDATHPGVVPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKISKHIEVSKLVKGRPLDNLEFMQWMKRYCDSFNGGIVNNYNALERREACKGGKQANQKAAP------------STTT----RRHDP--PVVNAGHKRARSVVPNNTAGSTGSV----QTSAATATATGRLFPVDTVPPVAPAQIQSLNMQITGLKLSVDSLEKERDFYFAKLRDIEILCQNPDVEHLPVVAAVQSILYATEDSPAVIADAKAAIGQQTSSLSKS-HNMPKKEAPKRKFAMTPEGEDVANAILSPRRRREPLADYN

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1601		12		87	0.992554

SSRs (tot: 1)

Start position	End position	Sequence	Length
156	171	GATTG GATTG GATTG G	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain