SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2911

Length: 2448 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene2911
TGCAGACTTGATTTGTTAGACAGGATGGTATTCGTATATTTATCTTTTTCGTCACCTGAAGAAATTAGGAGGGAGAAATAAAGAGTAAAGGCCCCACGCAGAAACGCGCCCTGTTCACGTCGGGACCGGGACCAGGAACGACAAATAAACCTTCACATCGCCCCTGTAGTTTCGAAATTAAACATATAGCCAAGAAAAAGGAGGATTGGTGTCAGCGGCGACATACAAAGTTTATGTGCCCATCTTGCTGCTGGAAATTGATGGAACAGCTCGTGAATTTCGTTATCCGTCCGCCCAGAGCTGATTATAGTCCCACACATGACTTACTAGAGCCGGAGTTTGTTCTTAGAGGACGCACATTTCGGCGCAAAGATTTGGAGGTTGTTAGTGAACATGGGCATATCTTGAAGTGCAGCCATTACATGCCACACCCAATACCTCAAGGCAGAACATTACCATGTGTAATTTATTGTCATGGAAACAGTGGATGCCGAGCGGATGCTATTGAAGCTGTCATGATTTTGCTTCCTTCATATATTACAGTGTTCACCCTTGATTTCTCTGGCTCTGGACTATCAGATGGAGAATATGTCACTTTGGGGTGGAGGGAGAAGGATGATTTGAAGGCAGTCGTCAACTTTTTGCGAACAGATGAACAAGTTTCATGCATTGGTTTGTGGGGTCGATCAATGGGGGCTGTAACAAGCTTGATGTATGGGGCTGAAGATCCATCAATTGCAGGGCTGGTTCTTGATAGTCCTTTTGCAAACTTAGTTGATCTGATGATGGAGCTGGTTGATGTGTACAAGATCCGCCTCCCAAAGTTCACTGTTAAAGTTGCAGTTCAATATATGCGAAAGGTGATCCAGAAGAAGGCGCATTTTGATATCATGGATCTTGATGTTGTTAAGATAGCGACAAAATCTTTTATTCCTGCATTATTTGGACATGGCACAGGGGACCTTTTTATTCAGCCTCATCATTCAGATCTCATATATAACTCATATGCAGGTGACAAAAACATCATCAAGTTTGAGGGTGACCACAACTCTCCACGACCACCATTCTATTATGATTCAATAAGCATTTTCTTTCATAATGTCTTGCATCCTCCAGATGATTTGATTGAACAACATGCTTCTGAATGTTTATATGACTACTTCGATGAATTAGGAAATCTGGATGAGAACGTGTTGCATGAAGGTCCAGGATCCACACAAAATGATACCACTGAAGATGCCATTGATAATTTTTGCCCTAGGTGGCAAATGAGTAGAACTGAGGTACCTTTTGAATTTGCAGACAACTCAGAAAAAACTGTAGGCATCATCCATGCAGAGGACTTAAGTGGACAGGAGAGGAAAGAAAACAGTGATGCTGAAGGTACATCCAATAAATGCGATAAAAGCAGTGACAGCATCCTTGACAAAAATTGCATTGATACTGTAGCAGCATTTCCCACAGGCAACCAAGTTTCTGACTGTCCTTTGGATAGATTTGCTCAAGTTCCAATTTCAATAGATGATGAAGAAAGGATGGTCATGGAAGCAATCATTGCCTCCCTTCGAGATATGGAAACTGGAGAAGCTTCTCAAAATAAAACCTCCCAACCTTCAGATACTATATCCTCTAAGAAAGCTTCAGAAACATTTTTTCAAGACATTTATAGTGGCCCTGAAAAAGAGTTTTCACAGGCCACAACGTCTGAAATAATGATATCACCATGTACGGATGGTTCCCAAACACAATCTGGTTCACCTGATAAAGTCAAGGCACAAACTGAGACTTGTTATGACTCATCTGCTGAAAGCAACACATCAACAAGCATATCAAAAGGAAGCCACCAACAGGGTAGTTTTTTCCATAATGACCAATAGCAACAGCTGCAACCAGTGGGTTTGTCTATGATGGCAATATCCTTAAAATGGCGAAGCGTGAAGCCTAGCAAACAGCCAACAGTATTTGTTTGTACATTATCAATTCAGTGTACTTACTACATATGATGAATTATAAATTAAGGCCTATTGGGGTCTGGCAGTTTCATGTTGCCCACTGTTGACATCATTGTAATTTTAGAGCTTCTGATCCAGGGTATTGGCTTTGATTCTTTTAAAAAGACACAAAACAGGTAAGTGGAACCAGTGCAGAATTATATTTTATAAACCTGCACTTACCACATCCTGTGACAATTGTTTCGTCATGTATCAAGAATGTCAACTTGCTGTCATTTGTCAGAGAGGACACTGTTTCATGATATTGCGTCCATAATCTGTTGCAATTATTTATATTTAGATTGGTTCGACATGGAAACTTTGGCATTCTGTAGTGGAAAATCTGCAGGAAAGTGGTTAAACGGCAATCTGTAAATACGTGTCCTTGGAGAAATGTTGTTGAAGGAAAATGTATTCATAATTTGCTCGTGGGTCTTATCTCGATTGCAATCCAAAT

Ace file of the UniGene sp_v3.0_unigene2911 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Catalytic, putative n=1 Tax=Ricinus communis RepID=B9RST1_RICCO	-	-	0.0	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%

Source	Gene names
Sma3	AT4g14290; At3g23540; At4g17150; At4g17150/dl4610w; CHLREDRAFT_188508; GSVIVT00011847001; GSVIVT00019882001; LOC_Os03g24450; MICPUCDRAFT_24751; MICPUN_79723; OJ1524_D08.35; Os02g0197900; Os03g0359000; Os06g0609700; OsI_06247; OsI_11646; OsI_23672; OsJ_057

Source	InterPros	Term	Type	Identity
Sma3	Alpha/beta hydrolase fold-1	IPR000073	-	-
Sma3	Protein synthesis factor, GTP-binding	IPR000795	-	-
Sma3	Ubiquitin interacting motif	IPR003903	-	-
Sma3	Translation elongation factor EFTu/EF1A, C-terminal	IPR004160	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G14290.1	alpha/beta-Hydrolases superfamily protein chr4:8225547-8230057 REVERSE LENGTH=558	56%
RefSeq	Arabidopsis thaliana	NP_193165.7	esterase/lipase domain-containing protein [Arabidopsis thaliana]	56%
RefSeq	Populus trichocarpa	XP_002315536.1	predicted protein [Populus trichocarpa]	50%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NLI1

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: RQNLLFLHYLDMAQGTFLFSLIIQISYITHMQVTKTSSSLRVTTTLHDHHSIMIQ*

Protein Length: 57

Fln nts: TGCAGACTTGATTTGTTAGACAGGATGGTATTCGTATATTTATCTTTTTCGTCACCTGAAGAAATTAGGAGGGAGAAATAAAGAGTAAAGGCCCCACGCAGAAACGCGCCCTGTTCACGTCGGGACCGGGACCAGGAACGACAAATAAACCTTCACATCGCCCCTGTAGTTTCGAAATTAAACATATAGCCAAGAAAAAGGAGGATTGGTGTCAGCGGCGACATACAAAGTTTATGTGCCCATCTTGCTGCTGGAAATTGATGGAACAGCTCGTGAATTTCGTTATCCGTCCGCCCAGAGCTGATTATAGTCCCACACATGACTTACTAGAGCCGGAGTTTGTTCTTAGAGGACGCACATTTCGGCGCAAAGATTTGGAGGTTGTTAGTGAACATGGGCATATCTTGAAGTGCAGCCATTACATGCCACACCCAATACCTCAAGGCAGAACATTACCATGTGTAATTTATTGTCATGGAAACAGTGGATGCCGAGCGGATGCTATTGAAGCTGTCATGATTTTGCTTCCTTCATATATTACAGTGTTCACCCTTGATTTCTCTGGCTCTGGACTATCAGATGGAGAATATGTCACTTTGGGGTGGAGGGAGAAGGATGATTTGAAGGCAGTCGTCAACTTTTTGCGAACAGATGAACAAGTTTCATGCATTGGTTTGTGGGGTCGATCAATGGGGGCTGTAACAAGCTTGATGTATGGGGCTGAAGATCCATCAATTGCAGGGCTGGTTCTTGATAGTCCTTTTGCAAACTTAGTTGATCTGATGATGGAGCTGGTTGATGTGTACAAGATCCGCCTCCCAAAGTTCACTGTTAAAGTTGCAGTTCAATATATGCGAAAGGTGATCCAGAAGAAGGCGCATTTTGATATCATGGATCTTGATGTTGTTAAGATAGCGACAAAATCTTTTATTCCTGCATTATTTGGACATGGCACAGGGGACCTTTTTATTCAGCCTCATCATTCAGATCTCATATATAACTCATATGCAGGTGACAAAAACATCATCAAGTTTGAGGGTGACCACAACTCTCCACGACCACCATTCTATTATGATTCAATAA___GCATTTTCTTTCATAATGTCTTGCATCCTCCAGATGATTTGATTGAACAACATGCTTCTGAATGTTTATATGACTACTTCGATGAATTAGGAAATCTGGATGAGAACGTGTTGCATGAAGGTCCAGGATCCACACAAAATGATACCACTGAAGATGCCATTGATAATTTTTGCCCTAGGTGGCAAATGAGTAGAACTGAGGTACCTTTTGAATTTGCAGACAACTCAGAAAAAACTGTAGGCATCATCCATGCAGAGGACTTAAGTGGACAGGAGAGGAAAGAAAACAGTGATGCTGAAGGTACATCCAATAAATGCGATAAAAGCAGTGACAGCATCCTTGACAAAAATTGCATTGATACTGTAGCAGCATTTCCCACAGGCAACCAAGTTTCTGACTGTCCTTTGGATAGATTTGCTCAAGTTCCAATTTCAATAGATGATGAAGAAAGGATGGTCATGGAAGCAATCATTGCCTCCCTTCGAGATATGGAAACTGGAGAAGCTTCTCAAAATAAAACCTCCCAACCTTCAGATACTATATCCTCTAAGAAAGCTTCAGAAACATTTTTTCAAGACATTTATAGTGGCCCTGAAAAAGAGTTTTCACAGGCCACAACGTCTGAAATAATGATATCACCATGTACGGATGGTTCCCAAACACAATCTGGTTCACCTGATAAAGTCAAGGCACAAACTGAGACTTGTTATGACTCATCTGCTGAAAGCAACACATCAACAAGCATATCAAAAGGAAGCCACCAACAGGGTAGTTTTTTCCATAATGACCAATAGCAACAGCTGCAACCAGTGGGTTTGTCTATGATGGCAATATCCTTAAAATGGCGAAGCGTGAAGCCTAGCAAACAGCCAACAGTATTTGTTTGTACATTATCAATTCAGTGTACTTACTACATATGATGAATTATAAATTAAGGCCTATTGGGGTCTGGCAGTTTCATGTTGCCCACTGTTGACATCATTGTAATTTTAGAGCTTCTGATCCAGGGTATTGGCTTTGATTCTTTTAAAAAGACACAAAACAGGTAAGTGGAACCAGTGCAGAATTATATTTTATAAACCTGCACTTACCACATCCTGTGACAATTGTTTCGTCATGTATCAAGAATGTCAACTTGCTGTCATTTGTCAGAGAGGACACTGTTTCATGATATTGCGTCCATAATCTGTTGCAATTATTTATATTTAGATTGGTTCGACATGGAAACTTTGGCATTCTGTAGTGGAAAATCTGCAGGAAAGTGGTTAAACGGCAATCTGTAAATACGTGTCCTTGGAGAAATGTTGTTGAAGGAAAATGTATTCATAATTTGCTCGTGGGTCTTATCTCGATTGCAATCCAAAT

Fln Alignment:

Contig2911___QNLLFLHYLDMAQGTFLFSLIIQISYITHMQVTKT
A9NLI1______________QSLLFLHYLDMAWRTILSSLIIQISYTTHMLVTKT

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
1087	25			75	0.996473
1088	25			75	0.996473
1090		75	25		0.996473
1270		85	14		0.993533
1587		11		88	0.923564
1668		11		88	0.923564
1670	88	11			0.923564
1691	12		87		0.992554
1693	87		12		0.992554
1704		88		11	0.923564
1705		88	11		0.923564
1724	14			85	0.993533
1876		12		87	0.992554
1879		12		87	0.992554
1881	12	87			0.992554
1886		87		12	0.992554
2023	10			90	0.90298
2029			90	10	0.90298
2059			33	66	1.0
2080		11		88	0.923564
2134	10			90	0.90298
2135	20		80		0.999996
2136		10		90	0.90298
2137	10		90		0.90298
2138			80	20	0.999996
2139			90	10	0.90298
2144		11		88	0.923564
2146	88			11	0.923564
2150		12	87		0.992554
2151	12	87			0.992554
2153		87		12	0.992554
2241	83	16			0.994512
2244	83	16			0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain