SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2891

Length: 2465 nt

UniGene Fasta

>sp_v3.0_unigene2891
ATACCACTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGGTGATGAGTGGAGCGTGGCTGGCATTTAATGCTAGAATTTTGTACGTTGTAGTTGTGGGTGGAATCCGCCCTGTTTTTGGCAATAAACAACAGTCGTGACATTGACAGTCACTCAAGACCAAGGGGACTGTTAACTGTAGACTGGACCATTACTTTTGTAGCGCATTGTTTGGCATAGATTCCATTGTCATTTCAATCACTCCTTTGTGCTTTTACTTCTTCAGGCTCTGAGGATTTCGGTCCCAAGGCCTCGAGTTTGGGTGTTTTGGGCTGAGGGATTGAGATTAGAATAGTAGCATGGCGCTGTAATGAGCATTGTGGCTTAGCGGGCATTAAGGCATTAGTAGTATGACTGTGTTTCTTAATGGGTATTGCCATTGAATGATGTAATGAAAACCCACTGAAGGAGATAAATGGGGATGCTGTATTGGACAATGGATAGGCTGCTGCTGCTCTTCTGGGTGTTATTGCTGATGCTTGCTCAGTCGCCAGGGTTGACAAGAGGAAGCACGGTGGGAGTTTGCTATGGACGAGAAGGCGATGACCTTCCAACTCCAGATAAAGTAGCCCAACTAGTGAAGTCAATAGCTCTCAAAAACATAATAATCTATGACTCCAATGTGCAGGTCCTTCAAGCGTTTGCCCACACTGGCATTGAGCTCATTATTGGGATACCCAATTCAGATTTGCTTGCATTTTCACAGTATCAGAGCACGGCAGACACATGGGTTACTAACAATCTATTGCCATACTACCCTGCCACCATGATAAAATATATAGCTGTGGGAACCGAAGTGACTGAGAGCACAATTAATGTTACATCCTTTGTTGTTCCTGCAATGCGCAATGTACAGACAGCTCTAAAAAAAGCTGGACTGGACCAAAAAATTAAGGTCTCTAGCACCCATGCACTTAGTATACTTTCCAGATCATTTCCACCCTCTGCAGGGGCATTTGACAGTAAATATGCATTTTTCCTCAGCCCCTTGTTGCAATTTCTTGCTCAGACACAATCTCCCTTTATGATCAATGTTTATCCCTACTATGCCTACAGAGATTCCCCTCGCAAGGTGTCCCTGGACTATGCTTTATTCAGACCTAACGATGGTGTCATTGACCAAAACACGGGTCTTGTGTATACGAATATGTTTGATGCGCAGCTGGATGCTCTCTTCTTTGCTTTAGAAGCCCTTAACTTTAGGTCACTTAGAGTAATGGTGACTGAAACAGGGTGGCCCTCCAAGGGAGGCTCTAAAGAGCCCGCAGCAACTCCAGACAATGCTGCTACTTACAATGGAAATCTGGTCAGGCATGTGATAAACAACACTGGAACTCCTTCGAGGCCTGGCCAGGAGATTGATACATACGTTTTTGCTCTCTTTAACGAGAACCGGAAGCCTGGATTGGAGTCAGAACGGAACTGGGGACTCTTCTATCCTGATGAAACAAAGGTTTACAATGTAGATATAAGTGGCACCGGGTTGCCCTATGTGGCTACTGGGGGGAACTTAACGTCTGTTGATGGAACCTCCTGGTGTGTAGCTTCTCCATCAGCCAAAGAATCTGACTTGCAGAAGGCTCTGGATTGGGCTTGTGGGTCTGGTAATGTGGACTGTTCCCCAATTCAGCCCGGCCAACCTTGTTATGAACCAGATAATCTTGCTTCCCATGCTTCGTATGCCTTTAACAACTATTACCAGAAGAATGGAGCCTCATCTGTGGCTTGCAATTTTGGTGGAACAGGCAATATAACCACCATAAATCCAAGCTATGAATCTTGTGTGTATACAACATCTAGAAATGGCTTAGCAAATACAACCAGTACCCCATCCTCATCCGGTGTAGACTCCATTGCTTCTTTTTCATGGCTAATTGGATGGGTAACAACATTATTCCTGGTTCACTTCTTGACAATACTCAAATGGCCATGAATCCATTCACGAGCTGAAAGCACTTTTTGGTGCATGAAATTTTCTCTCTGGTTCATGCGCTTAGCATCGATAGATTACTTCTAGCCTACGGCAAAGTATTTTGTTATGTAAATTTGGTGTCTGAGGAAAGAAGTAGAAGGGCAAGATCTTCAGCATTGATTCTTTTTTGTGAAGGCAAGGAATTGCTTGAACTTTGCCTCTATTGAGGTGTTGTATCATGTATGTATTATTTATTCACTTCGTAATGGTAGAAGGTCAAGGCTCTGTTAATATAAGAGTACAATTCTTGTAAGCAAAACGGCTGTAGTATTGATGGTGAGTGCTACTTTATAGTCAACAGACAGGTTATATAGATCATGAACCAATTCCCTACTCCATCAGCAGGCTTCTCCTCAACTCACAAATCTGTCTGCAATCCAAATGAGCTTTCGATGCAATTCCTTTATAGCTTGTGCTGGAATTTTTAACACATCTAGCTGATCTCTTGCAC

Ace file of the UniGene sp_v3.0_unigene2891

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	glucan endo-1,3-beta-glucosidase 13 [Arabidopsis thaliana] sp\|Q9FJU9.1\|E1313_ARATH RecName: Full=Glucan endo-1,3-beta-glucosidase 13; AltName: Full=(1->3)-beta-glucan endohydrolase 13; Short=(1->3)-beta-glucanase 13; AltName: Full=Beta-1,3-endoglucanase 1	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	48%
Sma3	Glucan endo-1,3-beta-glucosidase, putative	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Glucan endo-1,3-beta-D-glucosidase.	EC:3.2.1.39	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Starch and sucrose metabolism	00500		0.0	%

Source	Gene names
Sma3	134P10.1; 311G2.1; AT3G13560; AT4g18340; AT4g26830; At1g11820; At1g11830; At1g30080; At1g32860; At1g66250; At2g01630; At2g05790; At2g16230; At2g26600; At2g27500; At2g27500/F10A12.18; At3g13560; At3g55430; At4g18340; At4g26830; At4g29360; At4g34480; At5g42

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	anchored to membrane	GO:0031225	Cellular Component	-
Sma3	anchored to plasma membrane	GO:0046658	Cellular Component	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	cysteine-type peptidase activity	GO:0008234	Molecular Function	-
Sma3	lyase activity	GO:0016829	Molecular Function	-
Sma3	small conjugating protein ligase activity	GO:0019787	Molecular Function	-
Sma3	glucan endo-1,3-beta-D-glucosidase activity	GO:0042973	Molecular Function	-
Sma3	cation binding	GO:0043169	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	autophagy	GO:0006914	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	cellular cell wall organization	GO:0007047	Biological Process	-
Sma3	protein transport	GO:0015031	Biological Process	-
Sma3	post-translational protein modification	GO:0043687	Biological Process	-
Sma3	regulation of protein metabolic process	GO:0051246	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Ribosomal protein S7	IPR000235	-	-
Sma3	Glycoside hydrolase, family 17	IPR000490	-	-
Sma3	Ubiquitin-conjugating enzyme, E2	IPR000608	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Histone H2A	IPR002119	-	-
Sma3	Peptidase C54	IPR005078	-	-
Sma3	Cytokine-induced anti-apoptosis inhibitor 1	IPR007785	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	X8	IPR012946	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Ubiquitin-conjugating enzyme/RWD-like	IPR016135	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G56590.1	O-Glycosyl hydrolases family 17 protein chr5:22907521-22909436 FORWARD LENGTH=506	58%
RefSeq	Arabidopsis thaliana	NP_200470.1	glucan endo-1,3-beta-glucosidase 13 [Arabidopsis thaliana]	58%
RefSeq	Populus trichocarpa	XP_002330523.1	predicted protein [Populus trichocarpa]	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PPQ7

Fln msg: your sequence is longer than subject: 506 - 474

Fln protein: MGMLYWTMDRLLLLFWVLLLMLAQSPGLTRGSTVGVCYGREGDDLPTPDKVAQLVKSIALKNIIIYDSNVQVLQAFAHTGIELIIGIPNSDLLAFSQYQSTADTWVTNNLLPYYPATMIKYIAVGTEVTESTINVTSFVVPAMRNVQTALKKAGLDQKIKVSSTHALSILSRSFPPSAGAFDSKYAFFLSPLLQFLAQTQSPFMINVYPYYAYRDSPRKVSLDYALFRPNDGVIDQNTGLVYTNMFDAQLDALFFALEALNFRSLRVMVTETGWPSKGGSKEPAATPDNAATYNGNLVRHVINNTGTPSRPGQEIDTYVFALFNENRKPGLESERNWGLFYPDETKVYNVDISGTGLPYVATGGNLTSVDGTSWCVASPSAKESDLQKALDWACGSGNVDCSPIQPGQPCYEPDNLASHASYAFNNYYQKNGASSVACNFGGTGNITTINPSYESCVYTTSRNGLANTTSTPSSSGVDSIASFSWLIGWVTTLFLVHFLTILKWP*

Protein Length: 507

Fln nts: ATACCACTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGGTGATGAGTGGAGCGTGGCTGGCATTTAATGCTAGAATTTTGTACGTTGTAGTTGTGGGTGGAATCCGCCCTGTTTTTGGCAATAAACAACAGTCGTGACATTGACAGTCACTCAAGACCAAGGGGACTGTTAACTGTAGACTGGACCATTACTTTTGTAGCGCATTGTTTGGCATAGATTCCATTGTCATTTCAATCACTCCTTTGTGCTTTTACTTCTTCAGGCTCTGAGGATTTCGGTCCCAAGGCCTCGAGTTTGGGTGTTTTGGGCTGAGGGATTGAGATTAGAATAGTAGCATGGCGCTGTAATGAGCATTGTGGCTTAGCGGGCATTAAGGCATTAGTAGTATGACTGTGTTTCTTAATGGGTATTGCCATTGAATGATGTAATGAAAACCCACTGAAGGAGATAA_-_ATGGGGATGCTGTATTGGACAATGGATAGGCTGCTGCTGCTCTTCTGGGTGTTATTGCTGATGCTTGCTCAGTCGCCAGGGTTGACAAGAGGAAGCACGGTGGGAGTTTGCTATGGACGAGAAGGCGATGACCTTCCAACTCCAGATAAAGTAGCCCAACTAGTGAAGTCAATAGCTCTCAAAAACATAATAATCTATGACTCCAATGTGCAGGTCCTTCAAGCGTTTGCCCACACTGGCATTGAGCTCATTATTGGGATACCCAATTCAGATTTGCTTGCATTTTCACAGTATCAGAGCACGGCAGACACATGGGTTACTAACAATCTATTGCCATACTACCCTGCCACCATGATAAAATATATAGCTGTGGGAACCGAAGTGACTGAGAGCACAATTAATGTTACATCCTTTGTTGTTCCTGCAATGCGCAATGTACAGACAGCTCTAAAAAAAGCTGGACTGGACCAAAAAATTAAGGTCTCTAGCACCCATGCACTTAGTATACTTTCCAGATCATTTCCACCCTCTGCAGGGGCATTTGACAGTAAATATGCATTTTTCCTCAGCCCCTTGTTGCAATTTCTTGCTCAGACACAATCTCCCTTTATGATCAATGTTTATCCCTACTATGCCTACAGAGATTCCCCTCGCAAGGTGTCCCTGGACTATGCTTTATTCAGACCTAACGATGGTGTCATTGACCAAAACACGGGTCTTGTGTATACGAATATGTTTGATGCGCAGCTGGATGCTCTCTTCTTTGCTTTAGAAGCCCTTAACTTTAGGTCACTTAGAGTAATGGTGACTGAAACAGGGTGGCCCTCCAAGGGAGGCTCTAAAGAGCCCGCAGCAACTCCAGACAATGCTGCTACTTACAATGGAAATCTGGTCAGGCATGTGATAAACAACACTGGAACTCCTTCGAGGCCTGGCCAGGAGATTGATACATACGTTTTTGCTCTCTTTAACGAGAACCGGAAGCCTGGATTGGAGTCAGAACGGAACTGGGGACTCTTCTATCCTGATGAAACAAAGGTTTACAATGTAGATATAAGTGGCACCGGGTTGCCCTATGTGGCTACTGGGGGGAACTTAACGTCTGTTGATGGAACCTCCTGGTGTGTAGCTTCTCCATCAGCCAAAGAATCTGACTTGCAGAAGGCTCTGGATTGGGCTTGTGGGTCTGGTAATGTGGACTGTTCCCCAATTCAGCCCGGCCAACCTTGTTATGAACCAGATAATCTTGCTTCCCATGCTTCGTATGCCTTTAACAACTATTACCAGAAGAATGGAGCCTCATCTGTGGCTTGCAATTTTGGTGGAACAGGCAATATAACCACCATAAATCCAAGCTATGAATCTTGTGTGTATACAACATCTAGAAATGGCTTAGCAAATACAACCAGTACCCCATCCTCATCCGGTGTAGACTCCATTGCTTCTTTTTCATGGCTAATTGGATGGGTAACAACATTATTCCTGGTTCACTTCTTGACAATACTCAAATGGCCATGA___ATCCATTCACGAGCTGAAAGCACTTTTTGGTGCATGAAATTTTCTCTCTGGTTCATGCGCTTAGCATCGATAGATTACTTCTAGCCTACGGCAAAGTATTTTGTTATGTAAATTTGGTGTCTGAGGAAAGAAGTAGAAGGGCAAGATCTTCAGCATTGATTCTTTTTTGTGAAGGCAAGGAATTGCTTGAACTTTGCCTCTATTGAGGTGTTGTATCATGTATGTATTATTTATTCACTTCGTAATGGTAGAAGGTCAAGGCTCTGTTAATATAAGAGTACAATTCTTGTAAGCAAAACGGCTGTAGTATTGATGGTGAGTGCTACTTTATAGTCAACAGACAGGTTATATAGATCATGAACCAATTCCCTACTCCATCAGCAGGCTTCTCCTCAACTCACAAATCTGTCTGCAATCCAAATGAGCTTTCGATGCAATTCCTTTATAGCTTGTGCTGGAATTTTTAACACATCTAGCTGATCTCTTGCAC

Fln Alignment:

Contig2891___TVGVCYGREGDDLPTPDKVAQLVKSIALKNIIIYDSNVQVLQAFAHTGIELIIGIPNSDLLAFSQYQSTADTWVTNNLLPYYPATMIKYIAVGTEVTESTINVTSFVVPAMRNVQTALKKAGLDQKIKVSSTHALSILSRSFPPSAGAFDSKYA-FFLSPLLQFLAQTQSPFMINVYPYYAYRDSPRKVSLDYALFRPNDGVIDQNTGLVYTNMFDAQLDALFFALEALNFRSLRVMVTETGWPSKGGSKEPAATPDNAATYNGNLVRHVINNTGTPSRPGQEIDTYVFALFNENRKPGLESERNWGLFYPDETKVYNVDI--SGTGLPYVATGGNLTSVDGTS----------------WCVASPSAKESDLQKALDWACGSGNVDCSPIQPGQPCYEPDNLASHASYAFNNYYQKNGASSVACNFGGTGNITTINPSYESCVYTT
C0PPQ7______________TVGINYGRVADNLPSAFKVVQLIKSQGIDKLKLYDADPSALRAFSGTGVKITIALPNEQLFYVARRLSRAYAWVKQNVVAYVPGTQITAIAVGNEVFVNPNNITSYLVPAMTNLHRALVKYNLDGIVKISSPVALSALQSSYPASSGAFKNELVESTIKPMLDFLRQTGSYLMVNAYPFFAYKDNADVISLDYALFRPNAGVPDGNTGLLYTNLFDAQLDAVFSAMSALGYKDLDIVVSETGWPSKGDEDETGVGLDNAAAYNGNLVKHVMSNSGTPLRPKASLDTFLFALFNENKKPGPTSERNYGLFYPSEQRVYDIALTPSAVNNPAPASGNSSSSTPAVSAHHHSSGTTPAGGSETWCVANSKSDTSKLQAALDYACGEGDADCQQIQPGAPCYNPNTLEAHASYAFNSYYQKNSRKIGTCDFAGAAYVVTQSPKYGDCKFPT

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
332	77		22		0.999999
427	88		11		0.923564
558	11		88		0.923564
816	87	12			0.992554
818	87			12	0.992554
914	57		14		1.0
1361		11	88		0.923564
1362	88	11			0.923564
1433	12		87		0.992554
1585			10	90	0.90298
2222	10			90	0.999898
2232	12			87	0.999964
2310		25		75	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
487	498	GCT GCT GCT GCT	12

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain