SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2879

Length: 2132 nt

UniGene Fasta

>sp_v3.0_unigene2879
GGTGTTTGGGATTCACAGGTCTGAATTACAGTGAAGGAGAGCCACGGAATTTGTCCACGCCTTACTGGGCGTCATAAGTTTGAGATCTCGGCCTCCATTTCTTTGCAGTAGGTGCTAAGATTGAAGGTCTCAATATTTCCCTGAAAAAAATGCAAAATTGCGTGCTTTTTTGGCAGAAATTCTGTGCCATAAAGCAGATCTTTTAGCGTAAAATCTGCCAATCTGTAACTGTTTCTGCTCAGCACTGAATTGGAGCTCGTGGGCTACGTGGATTTTCTGTTTTCTAGGAGGTCAGAACAGCTAGGAGAAGTAACAGGACACCATGAAGGCCCTCATATTGGTCGGTGGTTTCGGAACCAGGCTGCGCCCTTTGACACTGAGTGTCCCTAAGCCTCTGGTTGACTTCGCCAATAAGCCAATGATTTTGCATCAGATTGAAGCACTCAAAGCTATCGGGGTTGATGAAGTTGTGCTAGCTATTAACTATCAGCCTGAGGTTATGCTGAGCTTCTTAAAGGCATTTGAAACGAAACTTGGGATTAAGATTACCTGTTCTCAAGAAACAGAGCCCATGGGCACTGCTGGGCCTTTAGCTCTTGCAAGGGACAAACTGATAGACGGATCTGGGGAACCATTTTTTGTTCTCAACAGTGATGTCATCAGTGAATACCCATTAAAGCAAATGGTTGATTTCCATACAAAACATGGAGGAGAGGCATCCATCATGGTGACCAAGGTTGATGAACCATCAAAGTATGGTGTTGTTATTCTTGACGAGGAGACTGGAAAGGTAGAGAGGTTCGTTGAGAAGCCCAAGGTCTTTGTTGGTAACAAGATCAATGCAGGAATCTACCTTCTGAACCCCAGTGTTTTGGACCGAATTGAGCTGAAACCCACATCCATTGAAAAAGAAGTGTTCCCAAAAATTGCACAAGAGAAACAGCTCTATGCTATGGTTTTACCTGGTTTCTGGATGGATATTGGGCAACCCAGAGACTATATTTCAGGCCTAAGGCTCTACTTAGATTCTCTTCGAAGAAACACCTCGGATAAATTAGCAACTGGGGTTAACATTGTTGGAAATGTGATTGTTGACAGCACTGCACAGATTGGTGAGGGTTGCTTGATTGGGCCAGATGTGGCCATTGGCCCGGGTAGTGTGATTGAGGCAGGAGTCAGACTGTCACGGTGCACCATTATGCGTGGAGTGCGCATCAAGAAACACGCTTGTGTGTCTGGAAGTATCATTGGTTGGCACTCTACTGTTGGTCAATGGGCTCGCGTTGAAAACATGACAATATTGGGAGAGGATGTCCATGTTTCTGATGAGGTATACACCAACGGAGGTGTGGTCCTTCCACATAAAGAAATCAAATCCAGCATTCTCAAGCCAGAAATTGTCATGTGATTGGAAAGATGGAGGCCTGGTAGTTAATTGGTTATTGTAATATTAATTACTTGTCCATGTCCTAGATTTTGGGGGTAAGTAGGAGGGATAATCTTATATGTTGGAGGGGCTTTCATTCTCTACCTCTCCCTAAATGACACGGGGTTTTCATCTTCTCCCTCATTGTTCACTGAGAGACTTAGACCCTCCTTCAACAACTGAAAACCGAATAAGCTCCATACAGTACAGTCAACTCTAGAAGAAGATGGATTCCAAATAAGAAGATATAAAAGACCAATCAGTTGAAGAAAGGTTGTAGGAATTCTCTGCAAAACTTCACAGAAAAGATCCAACTGCTACAGGCTATAAGAATCACTTCTGTGTTCTCCTCTGCTATATCATGGTATACTGTATTTTTTTTGGGTGGTCAATTTTATGCTATCTTCATTGGCAGGAAAATTTAGTATTCATTATAATAACTCTGCCTCTATCTCTGAAATCCTTTTGCAAGGGGGATGAGATGTCTGACTTTTACAAGTAATGTAATTTTTATTTTTTTGGGTGGTCAATTTTGTGCTATCCTCATTGGCAGACCTTTGACCTTTGAGACTGCATAGACAATTTAGGGTTCATTATAGCAACGCTGCCTTTATCTCTGAAATACTTTTGCAAGAGGCCTAGATCTCTAACCTTTTCAAAAAACTCTGATGACGTGATTTTTATCGAAAGTATTCTTACTTTTCAT

Ace file of the UniGene sp_v3.0_unigene2879

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	GDP-mannose pyrophosphorylase n=4 Tax=Pinaceae RepID=A6N835_PINTA	-	-	99%
FL-Next	tr=GDP-mannose pyrophosphorylase; Pinus taeda (Loblolly pine).	-	-	99%
Sma3	GDP-mannose pyrophosphorylase	-	-	-

Source	Gene names
Sma3	GMP1;

Source	GOs	Term	Type	e value	Identity
Sma3	nucleotidyltransferase activity	GO:0016779	Molecular Function	0.0	-
Sma3	biosynthetic process	GO:0009058	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Bacterial transferase hexapeptide repeat	IPR001451	-	-
Sma3	Hexapeptide transferase, conserved site	IPR018357	-	-
Sma3	Nucleotidyl transferase	IPR005835	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G39770.1	CYT1, VTC1, SOZ1, EMB101, GMP1 Glucose-1-phosphate adenylyltransferase family protein chr2:16589401-16590741 FORWARD LENGTH=361	85%
RefSeq	Arabidopsis thaliana	NP_001189713.1	mannose-1-phosphate guanylyltransferase [Arabidopsis thaliana]	85%
RefSeq	Populus trichocarpa	XP_002316262.1	predicted protein [Populus trichocarpa]	88%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A6N835

Fln msg:

Fln protein: MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAIGVDEVVLAINYQPEVMLSFLKAFETKLGIKITCSQETEPMGTAGPLALARDKLIDGSGEPFFVLNSDVISEYPLKQMVDFHTKHGGEASIMVTKVDEPSKYGVVILDEETGKVERFVEKPKVFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPKIAQEKQLYAMVLPGFWMDIGQPRDYISGLRLYLDSLRRNTSDKLATGVNIVGNVIVDSTAQIGEGCLIGPDVAIGPGSVIEAGVRLSRCTIMRGVRIKKHACVSGSIIGWHSTVGQWARVENMTILGEDVHVSDEVYTNGGVVLPHKEIKSSILKPEIVM*

Protein Length: 363

Fln nts: GGTGTTTGGGATTCACAGGTCTGAATTACAGTGAAGGAGAGCCACGGAATTTGTCCACGCCTTACTGGGCGTCATAAGTTTGAGATCTCGGCCTCCATTTCTTTGCAGTAGGTGCTAAGATTGAAGGTCTCAATATTTCCCTGAAAAAAATGCAAAATTGCGTGCTTTTTTGGCAGAAATTCTGTGCCATAAAGCAGATCTTTTAGCGTAAAATCTGCCAATCTGTAACTGTTTCTGCTCAGCACTGAATTGGAGCTCGTGGGCTACGTGGATTTTCTGTTTTCTAGGAGGTCAGAACAGCTAGGAGAAGTAACAGGACACC_-_ATGAAGGCCCTCATATTGGTCGGTGGTTTCGGAACCAGGCTGCGCCCTTTGACACTGAGTGTCCCTAAGCCTCTGGTTGACTTCGCCAATAAGCCAATGATTTTGCATCAGATTGAAGCACTCAAAGCTATCGGGGTTGATGAAGTTGTGCTAGCTATTAACTATCAGCCTGAGGTTATGCTGAGCTTCTTAAAGGCATTTGAAACGAAACTTGGGATTAAGATTACCTGTTCTCAAGAAACAGAGCCCATGGGCACTGCTGGGCCTTTAGCTCTTGCAAGGGACAAACTGATAGACGGATCTGGGGAACCATTTTTTGTTCTCAACAGTGATGTCATCAGTGAATACCCATTAAAGCAAATGGTTGATTTCCATACAAAACATGGAGGAGAGGCATCCATCATGGTGACCAAGGTTGATGAACCATCAAAGTATGGTGTTGTTATTCTTGACGAGGAGACTGGAAAGGTAGAGAGGTTCGTTGAGAAGCCCAAGGTCTTTGTTGGTAACAAGATCAATGCAGGAATCTACCTTCTGAACCCCAGTGTTTTGGACCGAATTGAGCTGAAACCCACATCCATTGAAAAAGAAGTGTTCCCAAAAATTGCACAAGAGAAACAGCTCTATGCTATGGTTTTACCTGGTTTCTGGATGGATATTGGGCAACCCAGAGACTATATTTCAGGCCTAAGGCTCTACTTAGATTCTCTTCGAAGAAACACCTCGGATAAATTAGCAACTGGGGTTAACATTGTTGGAAATGTGATTGTTGACAGCACTGCACAGATTGGTGAGGGTTGCTTGATTGGGCCAGATGTGGCCATTGGCCCGGGTAGTGTGATTGAGGCAGGAGTCAGACTGTCACGGTGCACCATTATGCGTGGAGTGCGCATCAAGAAACACGCTTGTGTGTCTGGAAGTATCATTGGTTGGCACTCTACTGTTGGTCAATGGGCTCGCGTTGAAAACATGACAATATTGGGAGAGGATGTCCATGTTTCTGATGAGGTATACACCAACGGAGGTGTGGTCCTTCCACATAAAGAAATCAAATCCAGCATTCTCAAGCCAGAAATTGTCATGTGA___TTGGAAAGATGGAGGCCTGGTAGTTAATTGGTTATTGTAATATTAATTACTTGTCCATGTCCTAGATTTTGGGGGTAAGTAGGAGGGATAATCTTATATGTTGGAGGGGCTTTCATTCTCTACCTCTCCCTAAATGACACGGGGTTTTCATCTTCTCCCTCATTGTTCACTGAGAGACTTAGACCCTCCTTCAACAACTGAAAACCGAATAAGCTCCATACAGTACAGTCAACTCTAGAAGAAGATGGATTCCAAATAAGAAGATATAAAAGACCAATCAGTTGAAGAAAGGTTGTAGGAATTCTCTGCAAAACTTCACAGAAAAGATCCAACTGCTACAGGCTATAAGAATCACTTCTGTGTTCTCCTCTGCTATATCATGGTATACTGTATTTTTTTTGGGTGGTCAATTTTATGCTATCTTCATTGGCAGGAAAATTTAGTATTCATTATAATAACTCTGCCTCTATCTCTGAAATCCTTTTGCAAGGGGGATGAGATGTCTGACTTTTACAAGTAATGTAATTTTTATTTTTTTGGGTGGTCAATTTTGTGCTATCCTCATTGGCAGACCTTTGACCTTTGAGACTGCATAGACAATTTAGGGTTCATTATAGCAACGCTGCCTTTATCTCTGAAATACTTTTGCAAGAGGCCTAGATCTCTAACCTTTTCAAAAAACTCTGATGACGTGATTTTTATCGAAAGTATTCTTACTTTTCAT

Fln Alignment:

Contig2879___MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAIGVDEVVLAINYQPEVMLSFLKAFETKLGIKITCSQETEPMGTAGPLALARDKLIDGSGEPFFVLNSDVISEYPLKQMVDFHTKHGGEASIMVTKVDEPSKYGVVILDEETGKVERFVEKPKVFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPKIAQEKQLYAMVLPGFWMDIGQPRDYISGLRLYLDSLRRNTSDKLATGVNIVGNVIVDSTAQIGEGCLIGPDVAIGPGSVIEAGVRLSRCTIMRGVRIKKHACVSGSIIGWHSTVGQWARVENMTILGEDVHVSDEVYTNGGVVLPHKEIKSSILKPEIVM
A6N835______________MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAIGVDEVVLAINYQPEVMLSFLKAFETKLGIKITCSQETEPMGTAGPLALARDKLIDGSGEPFFVLNSDVISEYPLKQMVDFHTKHGGEASIMVTKVDEPSKYGVVILDEETGKVEKFVEKPKVFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPKIAQEKQLYAMVLPGFWMDIGQPRDYISGLRLYLDSLRRNTSDKLATGVNIVGNVIVDSTAQIGEGCLIGPDVAIGPGCVIEAGVRLSRCTIMRGVRIKKHACVSGSIIGWHSTVGQWARVENMTILGEDVHVSDEVYTNGGVVLPHKEIKSSILKPEIVM

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
1371		10		90	0.90298
1449		18		81	0.999994
1555	20			80	0.995493
1556	20			80	0.995493
1557		80		20	0.995493
1558	80		20		0.995493
1691			21	64	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain