SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2865

Length: 1385 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene2865

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative histone H1 n=2 Tax=Pinaceae RepID=Q84L42_PINPS	-	-	2.0e-26	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Sma3	Histone H1	-	-	0.0	-

Source	Gene names
Sma3	AT2G30620; At1g06760; At2g30620; CHLREDRAFT_168461; CHLREDRAFT_192616; CHLREDRAFT_58; F4H5.15; GSVIVT00002167001; GSVIVT00020134001; GSVIVT00023870001; H0616A11.1; H1; H1-41; H1-I; H1-II; H15; H1C12; H1c; H1d; H1e; H1f; HON1; HON1501; HON1503; HON1504; HO

Source	GOs	Term	Type	Identity
Sma3	nucleosome	GO:0000786	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	nucleosome assembly	GO:0006334	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Histone H1/H5	IPR005818	-	-
Sma3	Histone H5	IPR005819	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G18050.1	HIS1-3 histone H1-3 chr2:7846095-7846670 FORWARD LENGTH=167	5.0e-19	47%
RefSeq	Arabidopsis thaliana	NP_179396.1	histone H1-3 [Arabidopsis thaliana]	6.0e-19	47%
RefSeq	Populus trichocarpa	XP_002315727.1	histone H1 [Populus trichocarpa]	4.0e-24	54%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PTL2

Fln msg:

Fln protein: MASAETTAEPVANNVVKEKKPRASKGSKPPPSHPTYLQMITEAITSLKERTGSSQYAIAGYIGKKYQSQLPANFKKVLAVQLRNLAKSGKLTKVKNSFKLSEELKKPAKPKAAKPVKPKAPAKKPAAKPKVAAKKAPKSAKPAAKIAKAPKVAKPKPAAAPKKVEKAAAPAKKPAPAKKAAPPAKKPAPAKKPAPAKKPAKPVKKAVTPKPKKAAPAAKKAKK*

Protein Length: 225

Fln nts: CAATATTATTGCATAAAACGAAGGATCCTTGCTCCCCGCGTACTCTGCGTTGATACCACTGCTTTCAACGCAGAGTACGCGAGGACCATCCGAACGGTTATTTTCTCGATATTTGTCTTCCCGCTTTTGATTTTGTCTACCAAGATCTCGATTTTGCTTTTGTTACCGTCTCTTTTTTTTACAGGTCTCGAACAATTCGGTGCTATCAACA_-_ATGGCTTCAGCTGAGACAACTGCCGAGCCTGTAGCCAACAATGTTGTAAAGGAAAAGAAGCCGAGGGCTTCCAAGGGATCGAAACCGCCACCTTCTCATCCTACATATCTCCAGATGATCACGGAAGCGATCACTTCTTTGAAGGAGAGGACCGGGTCAAGCCAGTATGCCATCGCAGGTTATATCGGGAAGAAGTACCAGTCTCAACTGCCTGCGAATTTCAAGAAGGTGCTAGCAGTTCAGCTGAGAAATCTTGCCAAATCTGGCAAGCTCACAAAGGTCAAGAATTCCTTCAAGCTTTCTGAGGAGCTGAAGAAGCCTGCGAAGCCGAAGGCCGCCAAGCCTGTGAAGCCTAAAGCCCCGGCCAAGAAGCCCGCAGCGAAGCCCAAGGTAGCGGCTAAGAAGGCTCCCAAGTCCGCTAAACCTGCCGCCAAAATAGCCAAGGCTCCAAAGGTCGCTAAGCCGAAGCCTGCAGCGGCTCCCAAGAAGGTGGAGAAGGCGGCAGCACCGGCTAAGAAGCCAGCGCCTGCTAAAAAGGCTGCCCCGCCTGCGAAGAAGCCAGCCCCTGCGAAGAAGCCTGCTCCTGCTAAGAAGCCGGCCAAACCTGTAAAGAAGGCCGTTACCCCGAAGCCTAAGAAAGCGGCGCCTGCTGCAAAGAAGGCGAAGAAATGA___GATCGGGCGGTTATTTTTCTAACTGTAAACTAGTCTGACACTTTGACATTTTGCATGGCCTGTTGTGGCCATAGGTGTCTATACTCGTTATTATTATGATTATTGTTATTGTTACAGGGTTGATTAATGGTTTTGTGTAAGTAGAAGGCTTGTGGTTTTTGTTGTAATTTTAACATTCATCCTTGTGAAGGAGAATATTTGTAGGCCATGGATTTTTAAACATGGAATTCCTGAAATATATTGTGTTCAACTTGTTCTTGTCCATAGTAGGGTTATACATTTGTGGGTATTGGCATTTGTGATGAGTGCCCTAATGGCCATTGCAATCACTTGATTGCAGGGTTTGAAAGCCCTGAAATGTGGTCGAGTGTTATATGTTTGTGATAAGTTGAAAACATGAATCGTGGATTGTGGTGTTGGTTATGCCTTGAAATTATGTGGTTCGGTGTCATATGTTTGTGGTAAGTGAAAAATGAGTTGTGGATAATTTGTTATGTTTTGT

Fln Alignment:

Contig2865___MASAETTAEPVANNVVKEKKPRASKGSKPPPSHPTYLQMITEAITSLKERTGSSQYAIAGYIGKKYQSQLPANFKKVLAVQLRNLAKSGKLTKVKNSFKLSEEL
C0PTL2______________MASAETTAEPVANNVVKEKKPRASKGPKPPPSHPTYLQMITEAITSLKERTGSSQYAISAYISSKYQSHLPANFKKILTVQLRNLAKSGKLTKVKNSFKLSEEL

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
139	50		50		1.0
245	12		87		0.992554
406	96		3		1.0
1077	81		19		1.0
1080	81	18			1.0
1104		84		15	1.0
1126	2		97		0.966038
1127		2		97	0.966038
1128	2		97		0.967822
1144	1			93	0.999955
1145	7	86	1	1	1.0
1147	73	17	4	4	1.0
1161		33		66	1.0
1212	30		70		1.0
1271		14		85	0.993533
1289		83		16	0.994512
1314		25		75	0.996473
1315		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain