SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2862

Length: 2948 nt

UniGene Fasta

>sp_v3.0_unigene2862
AGAGGAGAAAGTGAAGGAGAAACAGAAGCAGAAGAGGTGGAGGCTTGATGGTATTCATATTGTTGGATTCAAGCCCATGATTAGCATGGCAATACCATGTGTATAAATTGGTCTGGAATCCATCAATAAAATTTCATCCATCATCCCCATTCCTCGACATTTCTTTCTGTACAGACCCCTGGTGCTTCTCTCTGGCCGAAACTCTGAAAACAATTTTTATTTTCGGAATACAAACTGTGAGTTTGTCTGTCTTTATATGAAATCTTTTGTTTCTGCTTTTACTTTTGTGGTTTGTAAATACATTGGGCAGTGTTTGCCCGCTTGTTCTTCCGATGGGGCATAGAAGTTAAATCAATTTGAGTTCTGTAAATATTTTTTCGTTTCATCCTATTGGAGTCGAATGGAATGATCTTGCCTTTTCGCTGAAACCCTATGCGAAAACACTGAAAATTTGATGTGGGCGTGGGAGGAACGTTTATAGTAAAATAGAACGTGTTAACCGAAAGAAAATTGTATTTGGTCGGAAATTTGATAAGGATTTAGTGAATTAGAGAAAATGTCATCTTCGAGCATTGTTGTCAAGCCTAAGCCTCTGAGAGAGGAATCTCTTGCATCTCGAGGGTCATGGCTCCTGGGAAGACCAGCTGGGGTTACACCTGATAATAATGCCTCATTATCATCAGATGCCATTGAGATATATCTGAGCACTGCTCATTCTGTGACCCCCATGCGGATTCTGGCTTCTGACACCATAGAATCTGTTAAATTAAATATCCAAATGTGTAAGGGGTTTTATGCGAAGCACCAGATGTTGATATATGATGGCCGAGAATTGGCACGTCCTGATAGCCTTATCAAGGATTATGGTGTTACGGACGGGAATGTCTTACATTTGATTTTGCGGCTCTCGGATCTTCAACTCATTCGAGTAAAAACTTATAGTGGAAAGAAATATGTGTTTAGAGTTCAGAAAAACCGGAATGTACAAGATTTGAAGCAAAGAATTCATGCAAGAGACTCCGGTTTGGCATTGGACGAACAACAATTAGTTTTCAAAGGTGAGCAGCTCGAGGATAAGAGGCTCATTGAGGATTTGCTTTTGGAGGACGATGCTGTTATCCACCTGTATGTGAAGAAAACAGTAAAGCTTAAAACAAAACCTGCTGTAGCAGCCGTGGAAGTCTGTTTTGTAGCCCCTGATAGTGATAATGATAGACTGCCAGATTCAACAAAAAGACTACAATGCAGTCGTATTCAGGAGAACGCACTCATAACACCACCCCAGCCCCCCCGACTGACTGATGTTATAGAAAATACTCTTGAAAATGTGATAGATTATCAAGATGCAAGACCCGTTTATCTTGTGGAACCACTTACGGCTTCTGTCAATTGTGTGTTGTCGCCGACTTTTTATGATTTATTAAGTATTGTGAGGGCAGGTCTGGAGTCCGGAATGCCTCCAAAACAGTCTTCTGAAGGATGTGGAGGTGTGTATTTTATGCAAGATGCAACAGGGACCAGGTATGTTGGTGTCTTTAAACCTGTTGACGAGGAACCTATGGCTGTAAATAATCCAAGAGGTCTCCCTGTCTCCCTCAACGGAGAGGGCCTGAAAAGAGGGACTAGGGTGGGAGAGGGTGCTTATAGAGAGGTTGCTGCATATATATTGGACCATCCTATTGGTGGACCTCGAAACTTGACTAGTGATGAACCAGGTTTCGCAGGTGTCCCTCCTACTATGATGATTCGATGCTCCCATTATGCGTTTCACAATGCAAAAGCCATGGGTGCTTCAGTCCAAGAAACCAAGATAGGTTCTCTACAGATGTTTGTAAATTGTGAAAGCAGTTGTGAAGACATGGGTCCTGCAACTTTTCCGGTTCATGAAGTACACAAGATTACTGTCTTGGACATCAGGCTGGCAAATGCTGATAGGCATGGTGGAAATATCCTCATTTGTAATGAAGCTGAACAATCATCAATTAAGCTTGTTCCTATAGACCATGGATATTGTCTACCAGAGGCGTTTGAAGATTGTACATTTGAGTGGCTTTACTGGCCTCAGGCTAAACAACCTTATGATCTTGAGACTCTCCAGTATATAAGTTTGTTAGATGCCGATATGGATATTCAACTGTTGAAGTCTCATGGTTGGTCCCTGTCTCCGGCATGTTCTCGTGTACTGCAAATTTCAACAATGCTGCTTAAGAAGGGTGCAGCAGCAGGTCTTACTCCATATGAGATTGGCTGTATGATGTGTAGAGAGCTCGTCAACAAGCCATCGGTGATTGAGAACATTGTGGAGGAGTCTATGGAAGCAATTCTTCCTGGATGGAGTGAGTCTGCATTCCTGGAAGTAGTTTCTGAGATCATGGACTTCCACATAGAAAAAGCGAAGTGTACCCGATAGTAACGTTTTGTTTCGCACTGTTTTTATTTCCTCTTAGTTAAAGAGGGTTTATTAAAATGGCAACTTCCACCTAGAAAAAGCGAAGTATTGGGTAGCGAAGTGTACCCAATAGTAACATTTCGTTTCGCACCGTTTGCACTGTTTTTATTTCCTCTTAATTGAAGAGGGTTTATTAAAATGGCAGCGATGTAGTCCACGGTTTCTTAAATTTATAGTGTATTGTCTTGAAACTGTAGTCCACGGTTTCTTAGTTTCTTAAATTTATTGTGTGTTTTGTCTTGAAACTCGAGTCCACGGTTTCTTAAATTTATAGTGTGTATTGTCTTGAAACTCTCTTTTTGGCTGGACCAAGTTAGAAGGCAATAGAATAGATAATGTGTCTGAGTTGGAGTTATTATGATCTACATTGTTTTGTTCTATAATTTATGGAACTAATGACAGTATCCATATTTTAAAAGTATATTTTTGAGTTGTATATTTGTTTCATAAATATGAAGGCAAGTTAAATTGCCTGTGTATTATTGAGGTACCCGAAATA

Ace file of the UniGene sp_v3.0_unigene2862

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ubiquitin, putative n=1 Tax=Ricinus communis RepID=B9RSH8_RICCO	-	-	0.0	53%
FL-Next	tr=Putative polyubiquitin; Picea abies (Norway spruce) (Picea excelsa).	-	-	0.0	33%
Sma3	Phosphatidylinositol 3-and 4-kinase family protein	-	-	7.835e-08	-

Source	Gene names
Sma3	AT2G46500; At1g64460; At1g64470; At2g46500; At3g56600; At5g24240; CHLREDRAFT_111968; GSVIVT00006737001; GSVIVT00008615001; GSVIVT00023314001; GSVIVT00037263001; MICPUCDRAFT_33176; MICPUN_71077; OJ1014_B05.20; OJ1086_G08.5; OJ1115_D04.14; OJ1294_G12.30-1;

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	peroxisome	GO:0005777	Cellular Component	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	phosphotransferase activity, alcohol group as acceptor	GO:0016773	Molecular Function	-
Sma3	protein modification process	GO:0006464	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Fumarate lyase	IPR000362	-	-
Sma3	Phosphatidylinositol 3-/4-kinase, catalytic domain	IPR000403	-	-
Sma3	Ubiquitin	IPR000626	-	-
Sma3	Ribosomal protein L29, conserved site	IPR018254	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G46500.1	ATPI4K GAMMA 4, UBDK GAMMA 4, PI4K GAMMA 4 phosphoinositide 4-kinase gamma 4 chr2:19086741-19088534 REVERSE LENGTH=566	51%
RefSeq	Arabidopsis thaliana	NP_566076.1	phosphoinositide 4-kinase gamma 4 [Arabidopsis thaliana]	51%
RefSeq	Populus trichocarpa	XP_002297971.1	predicted protein [Populus trichocarpa]	50%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q7FPA4

Fln msg: your sequence is longer than subject: 618 - 229

Fln protein: MSSSSIVVKPKPLREESLASRGSWLLGRPAGVTPDNNASLSSDAIEIYLSTAHSVTPMRILASDTIESVKLNIQMCKGFYAKHQMLIYDGRELARPDSLIKDYGVTDGNVLHLILRLSDLQLIRVKTYSGKKYVFRVQKNRNVQDLKQRIHARDSGLALDEQQLVFKGEQLEDKRLIEDLLLEDDAVIHLYVKKTVKLKTKPAVAAVEVCFVAPDSDNDRLPDSTKRLQCSRIQENALITPPQPPRLTDVIENTLENVIDYQDARPVYLVEPLTASVNCVLSPTFYDLLSIVRAGLESGMPPKQSSEGCGGVYFMQDATGTRYVGVFKPVDEEPMAVNNPRGLPVSLNGEGLKRGTRVGEGAYREVAAYILDHPIGGPRNLTSDEPGFAGVPPTMMIRCSHYAFHNAKAMGASVQETKIGSLQMFVNCESSCEDMGPATFPVHEVHKITVLDIRLANADRHGGNILICNEAEQSSIKLVPIDHGYCLPEAFEDCTFEWLYWPQAKQPYDLETLQYISLLDADMDIQLLKSHGWSLSPACSRVLQISTMLLKKGAAAGLTPYEIGCMMCRELVNKPSVIENIVEESMEAILPGWSESAFLEVVSEIMDFHIEKAKCTR*

Protein Length: 619

Fln nts: AGAGGAGAAAGTGAAGGAGAAACAGAAGCAGAAGAGGTGGAGGCTTGATGGTATTCATATTGTTGGATTCAAGCCCATGATTAGCATGGCAATACCATGTGTATAAATTGGTCTGGAATCCATCAATAAAATTTCATCCATCATCCCCATTCCTCGACATTTCTTTCTGTACAGACCCCTGGTGCTTCTCTCTGGCCGAAACTCTGAAAACAATTTTTATTTTCGGAATACAAACTGTGAGTTTGTCTGTCTTTATATGAAATCTTTTGTTTCTGCTTTTACTTTTGTGGTTTGTAAATACATTGGGCAGTGTTTGCCCGCTTGTTCTTCCGATGGGGCATAGAAGTTAAATCAATTTGAGTTCTGTAAATATTTTTTCGTTTCATCCTATTGGAGTCGAATGGAATGATCTTGCCTTTTCGCTGAAACCCTATGCGAAAACACTGAAAATTTGATGTGGGCGTGGGAGGAACGTTTATAGTAAAATAGAACGTGTTAACCGAAAGAAAATTGTATTTGGTCGGAAATTTGATAAGGATTTAGTGAATTAGAGAAA_-_ATGTCATCTTCGAGCATTGTTGTCAAGCCTAAGCCTCTGAGAGAGGAATCTCTTGCATCTCGAGGGTCATGGCTCCTGGGAAGACCAGCTGGGGTTACACCTGATAATAATGCCTCATTATCATCAGATGCCATTGAGATATATCTGAGCACTGCTCATTCTGTGACCCCCATGCGGATTCTGGCTTCTGACACCATAGAATCTGTTAAATTAAATATCCAAATGTGTAAGGGGTTTTATGCGAAGCACCAGATGTTGATATATGATGGCCGAGAATTGGCACGTCCTGATAGCCTTATCAAGGATTATGGTGTTACGGACGGGAATGTCTTACATTTGATTTTGCGGCTCTCGGATCTTCAACTCATTCGAGTAAAAACTTATAGTGGAAAGAAATATGTGTTTAGAGTTCAGAAAAACCGGAATGTACAAGATTTGAAGCAAAGAATTCATGCAAGAGACTCCGGTTTGGCATTGGACGAACAACAATTAGTTTTCAAAGGTGAGCAGCTCGAGGATAAGAGGCTCATTGAGGATTTGCTTTTGGAGGACGATGCTGTTATCCACCTGTATGTGAAGAAAACAGTAAAGCTTAAAACAAAACCTGCTGTAGCAGCCGTGGAAGTCTGTTTTGTAGCCCCTGATAGTGATAATGATAGACTGCCAGATTCAACAAAAAGACTACAATGCAGTCGTATTCAGGAGAACGCACTCATAACACCACCCCAGCCCCCCCGACTGACTGATGTTATAGAAAATACTCTTGAAAATGTGATAGATTATCAAGATGCAAGACCCGTTTATCTTGTGGAACCACTTACGGCTTCTGTCAATTGTGTGTTGTCGCCGACTTTTTATGATTTATTAAGTATTGTGAGGGCAGGTCTGGAGTCCGGAATGCCTCCAAAACAGTCTTCTGAAGGATGTGGAGGTGTGTATTTTATGCAAGATGCAACAGGGACCAGGTATGTTGGTGTCTTTAAACCTGTTGACGAGGAACCTATGGCTGTAAATAATCCAAGAGGTCTCCCTGTCTCCCTCAACGGAGAGGGCCTGAAAAGAGGGACTAGGGTGGGAGAGGGTGCTTATAGAGAGGTTGCTGCATATATATTGGACCATCCTATTGGTGGACCTCGAAACTTGACTAGTGATGAACCAGGTTTCGCAGGTGTCCCTCCTACTATGATGATTCGATGCTCCCATTATGCGTTTCACAATGCAAAAGCCATGGGTGCTTCAGTCCAAGAAACCAAGATAGGTTCTCTACAGATGTTTGTAAATTGTGAAAGCAGTTGTGAAGACATGGGTCCTGCAACTTTTCCGGTTCATGAAGTACACAAGATTACTGTCTTGGACATCAGGCTGGCAAATGCTGATAGGCATGGTGGAAATATCCTCATTTGTAATGAAGCTGAACAATCATCAATTAAGCTTGTTCCTATAGACCATGGATATTGTCTACCAGAGGCGTTTGAAGATTGTACATTTGAGTGGCTTTACTGGCCTCAGGCTAAACAACCTTATGATCTTGAGACTCTCCAGTATATAAGTTTGTTAGATGCCGATATGGATATTCAACTGTTGAAGTCTCATGGTTGGTCCCTGTCTCCGGCATGTTCTCGTGTACTGCAAATTTCAACAATGCTGCTTAAGAAGGGTGCAGCAGCAGGTCTTACTCCATATGAGATTGGCTGTATGATGTGTAGAGAGCTCGTCAACAAGCCATCGGTGATTGAGAACATTGTGGAGGAGTCTATGGAAGCAATTCTTCCTGGATGGAGTGAGTCTGCATTCCTGGAAGTAGTTTCTGAGATCATGGACTTCCACATAGAAAAAGCGAAGTGTACCCGATAG___TAACGTTTTGTTTCGCACTGTTTTTATTTCCTCTTAGTTAAAGAGGGTTTATTAAAATGGCAACTTCCACCTAGAAAAAGCGAAGTATTGGGTAGCGAAGTGTACCCAATAGTAACATTTCGTTTCGCACCGTTTGCACTGTTTTTATTTCCTCTTAATTGAAGAGGGTTTATTAAAATGGCAGCGATGTAGTCCACGGTTTCTTAAATTTATAGTGTATTGTCTTGAAACTGTAGTCCACGGTTTCTTAGTTTCTTAAATTTATTGTGTGTTTTGTCTTGAAACTCGAGTCCACGGTTTCTTAAATTTATAGTGTGTATTGTCTTGAAACTCTCTTTTTGGCTGGACCAAGTTAGAAGGCAATAGAATAGATAATGTGTCTGAGTTGGAGTTATTATGATCTACATTGTTTTGTTCTATAATTTATGGAACTAATGACAGTATCCATATTTTAAAAGTATATTTTTGAGTTGTATATTTGTTTCATAAATATGAAGGCAAGTTAAATTGCCTGTGTATTATTGAGGTACCCGAAATA

Fln Alignment:

Contig2862___IEIYLSTAHSVT-PMRILASDTIESVKLNIQMCKGFYAKHQMLIYDGRELARPDSLIKDYGVTDGNVLHLILRLSDLQLIRVKTYSGKKYVFRVQKNRNVQDLKQRIHARDSGLALDEQQLVFKGEQLEDKRLIEDLLLEDDAVIHL
Q7FPA4______________MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA-DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
795	33		66		1.0
848		87		12	0.992554
892		87		12	0.992554
929	75		25		1.0
1138	20			80	0.995493
1139		25	75		0.996473
1141	75			25	0.996473
1142			75	25	0.996473
1451	12		87		0.992554
1484	87		12		0.992554
1536	14		85		0.993533
1537	14		85		0.993533
1572	14			85	0.993533
1573			85	14	0.993533
1599		83		16	0.994512
1699		90		10	0.90298
1809	83			16	0.994512
2501	88		11		0.923564
2706			14	85	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain