SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2853

Length: 1559 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene2853

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATP-dependent Clp protease proteolytic subunit n=1 Tax=Picea sitchensis RepID=A9NTE8_PICSI	-	-	85%
FL-Next	sp=ATP-dependent Clp protease proteolytic subunit; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Sma3	ATP-dependent Clp protease proteolytic subunit	-	-	-

Source	GOs	Term	Type	e value	Identity
Sma3	serine-type endopeptidase activity	GO:0004252	Molecular Function	0.0	-
Sma3	proteolysis	GO:0006508	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase S14, ClpP	IPR001907	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G12410.1	CLPR2, NCLPP2, CLP2 CLP protease proteolytic subunit 2 chr1:4223099-4224954 FORWARD LENGTH=279	62%
RefSeq	Arabidopsis thaliana	NP_563907.1	ATP-dependent Clp protease, protease subunit [Arabidopsis thaliana]	62%
RefSeq	Populus trichocarpa	XP_002329885.1	predicted protein [Populus trichocarpa]	60%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NTE8

Fln msg:

Fln protein: MAMASSSFFSHIPTPSARGVTLCSPTRCSINAYVGLRPQCPQGLFRNERSDLSISLHEKVQQSLISRLGTKGTCRALVTMMPIGTPRVPYRTPGEGSYQWIDIWNALYRERIIYIAQYIDEEFSNQILATMLYLDSVDSSKDINLYINGPGGDVTPCMAMYDTMQSLKSPIGTLCLGYAFNLSAFLLAAGAKGKRGASPSSRVALQSVAGAARGQADDIENEAKELIRTRNYVFEQLARNTGQPLEKITKDLSRVLYLNAQEALEYGIIDRILRPPRINSDASARREKGAGIG*

Protein Length: 295

Fln nts: GGGACAAGAGTTTTACTATTATTCCTAAAAGATATTCAAGTTATAAGGATTGTTTTTAATTTTTCAAACATCTGAGAAGTATGCGACTCCTTGAGGGCTCTTGAGCAGAGCAGATAAGAAAAAAGGGCAAGGGTTGGCAGGGTCTGGAAGGGCAATAGCGCCA_-_ATGGCGATGGCTTCTTCTTCCTTCTTTTCACACATCCCTACTCCTTCTGCAAGGGGGGTTACTTTATGTTCTCCCACCAGATGCTCGATAAACGCTTATGTTGGGTTACGTCCTCAGTGTCCTCAAGGTCTCTTCCGCAATGAAAGATCTGATTTGTCAATTTCTCTTCATGAGAAAGTTCAGCAGAGTCTCATATCTAGGCTTGGCACAAAGGGAACTTGTCGGGCTCTTGTGACGATGATGCCGATAGGGACTCCAAGAGTACCTTATAGAACTCCTGGAGAAGGATCATATCAGTGGATTGACATTTGGAATGCACTTTACAGGGAGCGCATCATTTATATAGCACAATACATAGATGAGGAATTCAGCAACCAGATATTGGCAACAATGCTTTACCTTGATAGTGTTGATTCATCAAAGGATATTAATTTGTATATTAATGGGCCAGGTGGTGATGTTACACCATGCATGGCAATGTATGATACCATGCAAAGCTTGAAAAGCCCAATTGGAACACTGTGCCTAGGCTATGCATTCAATCTTTCGGCATTTCTCCTTGCAGCTGGAGCAAAGGGCAAGCGTGGAGCATCACCTTCTTCAAGAGTTGCATTGCAGTCTGTTGCTGGAGCAGCTCGTGGGCAGGCTGACGATATAGAAAATGAAGCAAAGGAACTTATTAGAACTAGAAACTATGTGTTTGAGCAGCTGGCACGGAATACAGGGCAGCCACTTGAAAAGATTACAAAGGATCTAAGTCGGGTCCTGTACTTAAATGCTCAAGAAGCCCTTGAGTATGGGATTATTGATCGCATTTTGCGGCCGCCACGTATTAACAGTGATGCTTCTGCGAGGAGAGAAAAGGGGGCTGGTATTGGTTGA___CTTCTTGACATGATTATTTTTGCTAATCTTGCATACTGAGGCAGAGCTATTAGTTACTTTAGAAACATTGTGTTTGTACTGTGAATGGAGATTTTCATAATCTTGTTAGCTTATGAAATTGACACTTCCTCTAGTATGATACTATGAGGTTATTCTGTTTCTCAAATTATAAGATCCAGTTCCATGGATTATACAAGATGTAAATTAGTTCATGATACTTCTTCTCCGAGAGATCCAAACAAGCTCTGTTGCTGGGGCCTTCTGCAGACACAGCTGAAGATCAATCATTTTTGTACTTGACTTGTGTATTTTTTAAAGGTTAGAACCTAAGCTTATTTACATCACTGGTTTACCTTTAAACCAAAAGGAAGAGTACAGGTCTCAAGAAGTCCACAAAATTCATTAATGTTGTTAGGGTTTTATGCAGCCCTTTTTAAAACTGACATTCGCTTTTCCATATTTCATATGTAGATTTTGATTTAGTGTGAATGTAAGTGAGTTCCTGTTCATGCTA

Fln Alignment:

Contig2853___HIPTPSARGVTLCSPTRCSINAYVGLRPQCPQGLFRNERSDLSISLHEKVQQSLISRLGTKGTCRALVTMMPIGTPRVPYRTPGEGSYQWIDIWNALYRERIIYIAQYIDEEFSNQILATMLYLDSVDSSKDINLYINGPGGDVTPCMAMYDTMQSLKSPIGTLCLGYAFNXXXXXXXXXXXXXXXXXXXXRVALQSVAGAARGQADDIENEAKELIRTRNYVFEQLARNTGQPLEKITKDLSRVLYLNAQEALEYGIIDRILRPPRINSDASARREKGAGIG
A9NTE8______________HIPSPSARGATLPSPTRCSINAYVGLRPQCPQGLFRNERSDLSIALHEKVQQSLISRLGTKGTCRSQVTMMPIGTPRVPYRTPGEGSWQWVDIWNALYRERIIYIAQYIDEEFSNQILATMLYLDSVDSSKDITLYINGPGGDVTPCMSMYDTMQSLKSPIGTLCLGYAFNLAGFLLAAGAKGKRGASPSSRVVLQSVAGSARGQADDIENEAKELIRTRNYMFEQLARNTGQPLEKITKDLRRVMYFNAQEALEYGIIDRILRPPRIKPDASSKREAGAGIG

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
1530			80	20	0.995493
1542	20		80		0.995493
1543	80	20			0.995493
1544	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain