SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2850

Length: 1663 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene2850

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	actin-related protein C1B [Arabidopsis thaliana] gb\|AAL27513.1\|AF439845_1 At2g31300/F16D14.14 [Arabidopsis thaliana] gb\|AAD20675.1\| putative ARP2/3 protein complex subunit p41 [Arabidopsis thaliana] gb\|AAN18136.1\| At2g31300/F16D14.14 [Arabidopsis thaliana	-	-	0.0	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%

Source	Gene names
Sma3	At1g03770; At2g30910; At2g31300; At5g44280; F11M21.30; GSVIVT00003068001; GSVIVT00018617001; GSVIVT00018819001; LOC_Os11g36560; LOC_Os11g36970; MtrDRAFT_AC149577g13v1; OJ1136_C12.12; Os01g0796700; Os02g0817200; Os05g0497600; Os11g0574200; OsI_04070; OsI_0

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	cytoskeleton	GO:0005856	Cellular Component	-
Sma3	Arp2/3 protein complex	GO:0005885	Cellular Component	-
Sma3	actin binding	GO:0003779	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	protein methyltransferase activity	GO:0008276	Molecular Function	-
Sma3	protein methylation	GO:0006479	Biological Process	-
Sma3	regulation of actin filament polymerization	GO:0030833	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Ribosomal L11 methyltransferase, PrmA	IPR010456	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	Actin-related protein 2/3 complex, subunit 1	IPR017383	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-
Sma3		IPR019782	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G31300.1	ARPC1B, ARPC1 actin-related protein C1B chr2:13346313-13349787 REVERSE LENGTH=378	58%
RefSeq	Arabidopsis thaliana	NP_001189645.1	actin-related protein C1A [Arabidopsis thaliana]	57%
RefSeq	Populus trichocarpa	XP_002321070.1	predicted protein [Populus trichocarpa]	66%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRC4

Fln msg: atg_distance in limit (1-15): atg_distance = 2, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 337 - 383

Fln protein: MPAHEHSETEPSPTHSDNDTKGALVPYCSDKEDEQEGEENNDEDEDDDEEYVVVNLAAIREEMQCPICLGIIRKTRTVMECLHRFCRDCIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAAIYPDLDKYEAEEMALHEEEEDRNREQLVQLDLSFSWTFGVKWSPSGNSIAYVGHNSTIYFIDDVGPSAAAQTLTFSDLPLRDVLFLSDRAVVGVGFDCNPMLFTADNRGTWSFVKFLDERKSTPASSKYGSQFSEAFGKFYGQAKHGSNIDAVEPSKAPGGSHENCITCILPLPHPGETTIKGFSTSGLDGKVVIWELSNLNALFSQLAL*

Protein Length: 338

Fln nts: GCAGGCAGGCAGCAGAAGCAGGGAGAGACCGATCCATATTTATTATTATGGCCATATTATTCTAAATATTGTGTAGAGAGGCACCGGCAGGGCCACAGATCATCACACCCCAATACCAATTTGGTCAGAGGAATACGCA_-_ATGCCAGCTCACGAGCATTCAGAGACAGAGCCCTCTCCCACACATAGTGATAATGATACAAAAGGTGCACTAGTCCCCTATTGCAGTGACAAGGAAGATGAACAGGAAGGGGAAGAAAATAATGATGAAGATGAAGATGACGACGAAGAGTATGTTGTCGTCAATTTGGCAGCAATCCGAGAAGAAATGCAATGCCCTATTTGTTTGGGCATCATCCGGAAGACAAGGACAGTTATGGAATGCCTACATCGCTTTTGCAGGGATTGTATTGACAAGTCAATGCGTCTGGGGAACAATGAGTGCCCTGCATGCCGTACACATTGTGCCAGCCGGCGATCATTGCGTGATGATCCAAATTATGATGCATTGATTGCAGCAATCTATCCTGATTTGGATAAGTATGAAGCAGAGGAGATGGCTTTGCATGAAGAAGAGGAGGATAGAAACAGGGAGCAACTGGTGCAGCTGGATCTTTCTTTTAGTTGGACTTTCGGGGTTAAATGGTCTCCAAGTGGTAACAGCATTGCTTATGTAGGGCATAATTCGACAATCTATTTTATTGATGATGTTGGACCATCAGCTGCGGCCCAGACACTAACCTTTTCGGACTTGCCCCTTCGTGATGTACTGTTTCTTTCAGATAGGGCGGTGGTGGGTGTAGGCTTTGATTGCAACCCTATGCTATTTACAGCGGACAACAGGGGCACATGGAGTTTTGTAAAATTTCTGGATGAAAGAAAATCCACTCCGGCCAGTTCTAAATATGGGTCACAGTTTTCAGAAGCTTTTGGAAAGTTTTATGGTCAAGCAAAACATGGCTCAAACATTGATGCAGTTGAGCCATCCAAAGCTCCTGGAGGTTCACATGAGAATTGCATAACCTGCATTTTACCACTACCGCACCCAGGGGAAACCACAATAAAGGGTTTTAGTACCTCGGGCCTGGATGGTAAAGTGGTGATCTGGGAGCTCAGCAATTTGAATGCCCTCTTTTCACAACTTGCATTATAAGAGATCCTCTGCTGTCAATAAAAGATGGATCTTTGACAACTAGACAAATATTTCTGGCCATCCATTTTACGAACACGTCCATATCCATTCTTTTACCGGGTTTTTCTCTTTGTGATTGCTTTAGCATCTTAATTGGTTGCAATTTTCCTGCCCGTTTGCCTTGATTTCTGGAAAACAAAATTCAGGCATTCTTTATCAGCCAATCACGATTTCCAGTTCTCAGCATTGGGTATTCAAGGACTAAGCACTGTACGTCTGTGGAGTTACGTATATTCCTGTAAATTATTGTCAACTCAGATACATTACTACGTTTGGATCTATTAAATTTGGTTGTCCAACATTGCATATCCATTTTCTTTCTTTTTTTAGGGTTTCTTGAAGCTGCTGGGGGACTAGAGTATACCATTACATAGCAGTCATTATTCCACTTCAGGGAGGAAGGGTTCACATTCCTCGCAATGTTAAAAGGGTATTCTGGCTTAGCAGATGCTATTACTTTGGTTTGACATGCAC

Fln Alignment:

Contig2850___EQLVQLDLSFSWTFGVKWSPSGNSIAYVGHNSTIYFIDDVGPSAAAQTLTFSDLPLRDVLFLSDRAVVGVGFDCNPMLFTADNRGTWSFVKFLDERKSTPASSKYGSQFSEAFGKFYGQAKHGSNIDAVEPSKAPGGSHENCITCILPLPHPGETTIKGFSTSGLDGKVVIWELSNLNALFSQLAL
B8LRC4______________EQLVQLDLSFSWTFGVKWSPSGSSIAYVGHNSTIYFIDDVGPSACAQTVAFSGLPLRDVLFLSERVVVGVGYDCNPMLFIADNRGTWSFVKFLDEKKSSPASSKYGSQFSEAFGKFYGQAKHGANIDAVEPSKAPGGSHENCITCILPLPYPGETTVKRFSTSGLDGKVVIWELSNLNNLFSQLAI

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1471		28		71	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain