SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2837

Length: 3260 nt

UniGene Fasta

>sp_v3.0_unigene2837
CTATTCAATACATGTGGGCTTCTGCTCTGTTACGGCGATGGAACGGCCCTAGGTTTTATGAAACTTCCTCCTCTAAGTACATCGTTAATTACCTGCCCTGCATCGGCAATATCACAGCTTCAAACGCCGAAAATCGTCCCCGTCGTGCGATTCTGCATCTGTTGATGTAAAGATATTGGATTTTCACCAAGTATTCCTTCTGCAACGCCATATTTTGGCAACCAGAAGCACAGGTCACAAATTCCCTTGTTCTTCCAAGGAGAAATGCACCACAAGGTTTTTATACATTAAGGAGTTTTGGTTGATGACAAGATACTTTGTCTGGGGAAAAGGTTGTGCATTAGACTTCTGCTTCCTTGCACCTTTGTATTGGAAGATCAGGTACAGTCATGGATGATCGTGCCAACAGGAGGACTGCACTGCCTGTTGGAGTTAGTAGGCGGGGTACTTGTTTTTCTGGAGAACAAAATCATGTAGCACAGAATATCCATTACCCTACAAGAATTGGGGGTAGTACCAGAGTGACTGCTCTTAAACCCAACCATATTGATGATAAGCAACCAGGGGAATCCTCTAAAATTAGTGGACGTCCCTCAAGCAACAAGTCATTGTTGCCAAAGATGCCAAAGTCGGTTTCAGCAGTTTCTAAAGTAGGTGCCTCCAGCTCCTCAAATTTGAAGAAGACACGCAAAGTGCAGCCAAATTCTGCTGCTCCTGGGCAGTCAAGTTCAATACGTAATCTCTCTGCTGGGTTGGGTCAGACAGGGCAGGTTAGTGCTGCATTCCATAAGGGAGAACCAAGCAATAGCAGTAGACTCGGTCTATCAGAAATATCGAATTTGACAAGCTCTGAAGGATCAACCTCTGACTTGGACTTTCATCAGGAAACACCGACTTCTTCCATGAGGAGAAGCCTCTTTCGTGGTGGTTCTAGTGTGGAAAGGAGAGATAAACGAGTTGTTTCTAGCAGGTTTCTAAATAGACAGGGAAGTTGGAATGATATGGAGTTATTAAATGTAAACAGCAGTTTGTCAGATTTAATGTATGGGGAACATGAACATAATTGGACTGGTATAGAGGAAAATGGGACTAGGAACATAGGAGCCGGTACTCCTCTGAGATCTGGGCTCATGAATGATGCAACAAATCGGTCAATTTTTGAAAATGATCATGAATCCGTCTCTGATGATTCTTTTGTCTCTGCCCCATCAGTGGCTGAAGATCTATTTGACGTGGATGTTGCTAGTAGCAGTGATTCTCTGTTGCAGTCTAGCCCACAGTTAGGTCAAAGAGCTCAAGACCATGGCAATTTTAGAAGGCCAATGCTAGGCCATGCAGATAAATCGCATATGAATCTTGGTGAGGTTGTGAATATGTCTACGTCTTCTCTATCTAAACGCAAGGCTTCTATCACACGAAATGGAAGCCAAATTCCGAGTAAAAGTTCATCTCATGAAATTCCTTGTACAGGATCTGGATCTGCATCAAAGGACAGGTATTCCAGGAGACCCTCAGCAGGAACTAGTAGGCGTAATCTTGGTAACTTTGGATGCAAATCAGCATCTGATGCACTACCATTTAATGTTTCTTCATCCAGTGACCAGGTCTTGGAGCAACCTGGCAGTAGAAGACTTGATCTAGGTAGGAAAATAATTGATGGACATGATTCAGCAAGGAGCCGGCGTTTGGCCAAAGCGCCAGTGGCAAACAGTACAGGTGGGTCAGTGTCCCAGAGAACTTTCCGTGCTGGAGCAGGAATTGGTCCTCGACATATGACTTCAAAGTCAAATTCAACTCCCCAAGCATCTAGAAGAACAGCTCATGCTATGCAACCTGATAATTGTTGTCCCCTGGGAATTCTGGGAGGGGATGGTGTTGTTGAGTTGGGAATTCCAACTGAAAGTAGTAGCAATGGCATGCCAGCATCAGACCAATCTGGACTTCTTTCTAATAGAGTGGAGGTACCAAGCCCTTCCTCTTTCCGGGGGCGAAGTGTCCATGCTGTTTCACAAAGGCAAAATGAAGTATCGAATGTAGCAGCATCCACATCAGGGGAGAGGGTTGCAAACCGATTTGTTGGCAGCACCAGAAGGGGCACATCAAATAGTGCAGCAAGTGCACGGCTGTTTGGATTAGCAGGATCTTCAAGTAGACTCAATAATACTTGTACTGATACCAATAGTAGTTCTCACAACCTTCTATCTGAGGATAATGTTGGCAATAACACATTAAATATATCTGGCCTAGCACCATCAAGGGCACCTCCAGTACCCCAAGGGGCACGTTCTGGTCGGTCACAGATAAATGCAATTTCATCCACATCGCTATCTTTCTCGGGATCTGCTCCAGCTCGGGCACCCCCCTCATTTCCCTCATCTAGTCCTACATCTCTGGCGTCTGCAGTGGATACAAATTATTCAAGCTTCCTTGATGGGCTTGCTTATGGAAGGTCAGGATCTGGCAATGAATGTCCGGCTGGAAGGCCCATGGTTGCCCATTCTGAAGTTGGTGGACGCAGGTCTTTACGCAATCTCTCCATTGAAAATGACAGTCAGACACGGTATACAATTGAAGGACTAGCAGAGGTGCTATTGGCATTGGAACGGATTGAACAAGATGAGGAGTTAACATACGAGCAAGTGTTGATGCTAGAGGCAAATTTGCTGTTCAGTGGTATAAATATGCACGATCAACACAGTGACATGCGGCTAGATATTGATAACATGTCTTATGAGGAACTACTAGCTTTGGAGGAGCGGATTGGTAGTGTTAATACAGGACTTACTGAAGAGGCTGTTTCCAAGTGTTTGACGAGATTTCTGTATACCTCGGATGTAGCAGCTGCTACTTCGACTTCCCAAGAAAGTGAAGTGAAATGCAGTGTTTGCCAGGAAGAGTATGAAGAAAGAGAGGAGCTGGGCAGGTTAAATTGTGATCACAGTTATCATGCTGCTTGTATTAAGCAGTGGCTGCTTCAAAAGAATCAGTGTCCAATTTGCAAATCTCCAGCCGTGTCATAGCTGGAGGAATTTGATTCCATTGGCTTTTGAATATTGATTGATGAGATTAAATGTTGATCACTGTTTCCAATAAAAAATTCTAGTCTCTTTTCACCCATGCCCTGGGCAGATAAAGAGAAATCTGGGGTCTGTCTAATTACCCTTGCATGCAACATGCATATGGGTCTGTAAATTCATTTGAACACCTTGTATCTATGAAAAAGAAATAAAATAAATTTGTCAGATATTTTCATGATGTGT

Ace file of the UniGene sp_v3.0_unigene2837

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RING/U-box domain-containing protein [Arabidopsis thaliana] ref\|NP_974832.1\| RING/U-box domain-containing protein [Arabidopsis thaliana] gb\|AAM97093.1\| RING finger-like protein [Arabidopsis thaliana] gb\|AAT47817.1\| At5g24870 [Arabidopsis thaliana] gb\|AED9	-	-	2.99878e-43	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	41%
Sma3	Protein binding protein	-	-	6.703e-07	-

Source	Gene names
Sma3	AT4g31450; At1g45180; At2g37150; At3g15070; At4g31450; F3L17.20; GSVIVT00005654001; GSVIVT00017737001; GSVIVT00018214001; GSVIVT00019512001; GSVIVT00019515001; GSVIVT00019517001; GSVIVT00019518001; GSVIVT00027766001; GSVIVT00029951001; OSIGBa0118P15.2; OS

Source	GOs	Term	Type	e value	Identity
Sma3	protein binding	GO:0005515	Molecular Function	0.0	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Aspartate/ornithine carbamoyltransferase	IPR006130	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G24870.1	RING/U-box superfamily protein chr5:8545008-8546923 REVERSE LENGTH=520	0.0	56%
RefSeq	Arabidopsis thaliana	NP_974832.1	RING/U-box domain-containing protein [Arabidopsis thaliana]	0.0	56%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADP2

Fln msg: your sequence is longer than subject: 877 - 282

Fln protein: MDDRANRRTALPVGVSRRGTCFSGEQNHVAQNIHYPTRIGGSTRVTALKPNHIDDKQPGESSKISGRPSSNKSLLPKMPKSVSAVSKVGASSSSNLKKTRKVQPNSAAPGQSSSIRNLSAGLGQTGQVSAAFHKGEPSNSSRLGLSEISNLTSSEGSTSDLDFHQETPTSSMRRSLFRGGSSVERRDKRVVSSRFLNRQGSWNDMELLNVNSSLSDLMYGEHEHNWTGIEENGTRNIGAGTPLRSGLMNDATNRSIFENDHESVSDDSFVSAPSVAEDLFDVDVASSSDSLLQSSPQLGQRAQDHGNFRRPMLGHADKSHMNLGEVVNMSTSSLSKRKASITRNGSQIPSKSSSHEIPCTGSGSASKDRYSRRPSAGTSRRNLGNFGCKSASDALPFNVSSSSDQVLEQPGSRRLDLGRKIIDGHDSARSRRLAKAPVANSTGGSVSQRTFRAGAGIGPRHMTSKSNSTPQASRRTAHAMQPDNCCPLGILGGDGVVELGIPTESSSNGMPASDQSGLLSNRVEVPSPSSFRGRSVHAVSQRQNEVSNVAASTSGERVANRFVGSTRRGTSNSAASARLFGLAGSSSRLNNTCTDTNSSSHNLLSEDNVGNNTLNISGLAPSRAPPVPQGARSGRSQINAISSTSLSFSGSAPARAPPSFPSSSPTSLASAVDTNYSSFLDGLAYGRSGSGNECPAGRPMVAHSEVGGRRSLRNLSIENDSQTRYTIEGLAEVLLALERIEQDEELTYEQVLMLEANLLFSGINMHDQHSDMRLDIDNMSYEELLALEERIGSVNTGLTEEAVSKCLTRFLYTSDVAAATSTSQESEVKCSVCQEEYEEREELGRLNCDHSYHAACIKQWLLQKNQCPICKSPAVS*

Protein Length: 878

Fln nts: CTATTCAATACATGTGGGCTTCTGCTCTGTTACGGCGATGGAACGGCCCTAGGTTTTATGAAACTTCCTCCTCTAAGTACATCGTTAATTACCTGCCCTGCATCGGCAATATCACAGCTTCAAACGCCGAAAATCGTCCCCGTCGTGCGATTCTGCATCTGTTGATGTAAAGATATTGGATTTTCACCAAGTATTCCTTCTGCAACGCCATATTTTGGCAACCAGAAGCACAGGTCACAAATTCCCTTGTTCTTCCAAGGAGAAATGCACCACAAGGTTTTTATACATTAAGGAGTTTTGGTTGATGACAAGATACTTTGTCTGGGGAAAAGGTTGTGCATTAGACTTCTGCTTCCTTGCACCTTTGTATTGGAAGATCAGGTACAGTC_-_ATGGATGATCGTGCCAACAGGAGGACTGCACTGCCTGTTGGAGTTAGTAGGCGGGGTACTTGTTTTTCTGGAGAACAAAATCATGTAGCACAGAATATCCATTACCCTACAAGAATTGGGGGTAGTACCAGAGTGACTGCTCTTAAACCCAACCATATTGATGATAAGCAACCAGGGGAATCCTCTAAAATTAGTGGACGTCCCTCAAGCAACAAGTCATTGTTGCCAAAGATGCCAAAGTCGGTTTCAGCAGTTTCTAAAGTAGGTGCCTCCAGCTCCTCAAATTTGAAGAAGACACGCAAAGTGCAGCCAAATTCTGCTGCTCCTGGGCAGTCAAGTTCAATACGTAATCTCTCTGCTGGGTTGGGTCAGACAGGGCAGGTTAGTGCTGCATTCCATAAGGGAGAACCAAGCAATAGCAGTAGACTCGGTCTATCAGAAATATCGAATTTGACAAGCTCTGAAGGATCAACCTCTGACTTGGACTTTCATCAGGAAACACCGACTTCTTCCATGAGGAGAAGCCTCTTTCGTGGTGGTTCTAGTGTGGAAAGGAGAGATAAACGAGTTGTTTCTAGCAGGTTTCTAAATAGACAGGGAAGTTGGAATGATATGGAGTTATTAAATGTAAACAGCAGTTTGTCAGATTTAATGTATGGGGAACATGAACATAATTGGACTGGTATAGAGGAAAATGGGACTAGGAACATAGGAGCCGGTACTCCTCTGAGATCTGGGCTCATGAATGATGCAACAAATCGGTCAATTTTTGAAAATGATCATGAATCCGTCTCTGATGATTCTTTTGTCTCTGCCCCATCAGTGGCTGAAGATCTATTTGACGTGGATGTTGCTAGTAGCAGTGATTCTCTGTTGCAGTCTAGCCCACAGTTAGGTCAAAGAGCTCAAGACCATGGCAATTTTAGAAGGCCAATGCTAGGCCATGCAGATAAATCGCATATGAATCTTGGTGAGGTTGTGAATATGTCTACGTCTTCTCTATCTAAACGCAAGGCTTCTATCACACGAAATGGAAGCCAAATTCCGAGTAAAAGTTCATCTCATGAAATTCCTTGTACAGGATCTGGATCTGCATCAAAGGACAGGTATTCCAGGAGACCCTCAGCAGGAACTAGTAGGCGTAATCTTGGTAACTTTGGATGCAAATCAGCATCTGATGCACTACCATTTAATGTTTCTTCATCCAGTGACCAGGTCTTGGAGCAACCTGGCAGTAGAAGACTTGATCTAGGTAGGAAAATAATTGATGGACATGATTCAGCAAGGAGCCGGCGTTTGGCCAAAGCGCCAGTGGCAAACAGTACAGGTGGGTCAGTGTCCCAGAGAACTTTCCGTGCTGGAGCAGGAATTGGTCCTCGACATATGACTTCAAAGTCAAATTCAACTCCCCAAGCATCTAGAAGAACAGCTCATGCTATGCAACCTGATAATTGTTGTCCCCTGGGAATTCTGGGAGGGGATGGTGTTGTTGAGTTGGGAATTCCAACTGAAAGTAGTAGCAATGGCATGCCAGCATCAGACCAATCTGGACTTCTTTCTAATAGAGTGGAGGTACCAAGCCCTTCCTCTTTCCGGGGGCGAAGTGTCCATGCTGTTTCACAAAGGCAAAATGAAGTATCGAATGTAGCAGCATCCACATCAGGGGAGAGGGTTGCAAACCGATTTGTTGGCAGCACCAGAAGGGGCACATCAAATAGTGCAGCAAGTGCACGGCTGTTTGGATTAGCAGGATCTTCAAGTAGACTCAATAATACTTGTACTGATACCAATAGTAGTTCTCACAACCTTCTATCTGAGGATAATGTTGGCAATAACACATTAAATATATCTGGCCTAGCACCATCAAGGGCACCTCCAGTACCCCAAGGGGCACGTTCTGGTCGGTCACAGATAAATGCAATTTCATCCACATCGCTATCTTTCTCGGGATCTGCTCCAGCTCGGGCACCCCCCTCATTTCCCTCATCTAGTCCTACATCTCTGGCGTCTGCAGTGGATACAAATTATTCAAGCTTCCTTGATGGGCTTGCTTATGGAAGGTCAGGATCTGGCAATGAATGTCCGGCTGGAAGGCCCATGGTTGCCCATTCTGAAGTTGGTGGACGCAGGTCTTTACGCAATCTCTCCATTGAAAATGACAGTCAGACACGGTATACAATTGAAGGACTAGCAGAGGTGCTATTGGCATTGGAACGGATTGAACAAGATGAGGAGTTAACATACGAGCAAGTGTTGATGCTAGAGGCAAATTTGCTGTTCAGTGGTATAAATATGCACGATCAACACAGTGACATGCGGCTAGATATTGATAACATGTCTTATGAGGAACTACTAGCTTTGGAGGAGCGGATTGGTAGTGTTAATACAGGACTTACTGAAGAGGCTGTTTCCAAGTGTTTGACGAGATTTCTGTATACCTCGGATGTAGCAGCTGCTACTTCGACTTCCCAAGAAAGTGAAGTGAAATGCAGTGTTTGCCAGGAAGAGTATGAAGAAAGAGAGGAGCTGGGCAGGTTAAATTGTGATCACAGTTATCATGCTGCTTGTATTAAGCAGTGGCTGCTTCAAAAGAATCAGTGTCCAATTTGCAAATCTCCAGCCGTGTCATAG___CTGGAGGAATTTGATTCCATTGGCTTTTGAATATTGATTGATGAGATTAAATGTTGATCACTGTTTCCAATAAAAAATTCTAGTCTCTTTTCACCCATGCCCTGGGCAGATAAAGAGAAATCTGGGGTCTGTCTAATTACCCTTGCATGCAACATGCATATGGGTCTGTAAATTCATTTGAACACCTTGTATCTATGAAAAAGAAATAAAATAAATTTGTCAGATATTTTCATGATGTGT

Fln Alignment:

Contig2837___LDIDNMSYEELLALEERIGSVNTGLTEEAVSKCLTRFLYTSDVAAATSTSQESEVKCSVCQXXXXXXXXLGRLNCDHSYHAACIKQWLLQKNQCPIC
D5ADP2______________VDPDNMLYEELVALSEVVGTESRGLAPDLISS-----LPLSKFVPETPSSSNSE-RCVICRLEYEGGDIILTLPCKHQYHSDCIKNWLQIKKVCPVC

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
2002		16		83	0.994512
2275	25	75			1.0
2289		25		75	1.0
2296			90	10	0.90298
2302	90			10	0.90298
2303		10	90		0.90298
3104	30			70	1.0
3117		70		30	1.0
3123		50	50		1.0
3137	84		15		1.0
3183	89	10			0.999919
3221	85		14		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain