SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2822

Length: 1309 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene2822

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Sina domain containing protein	-	-	3.0e-18	26%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%

Source	Gene names
Sma3	GSVIVT00022337001; PHYPADRAFT_25870; PHYPADRAFT_26035; POPTRDRAFT_555926; VITISV_037121;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-
Sma3	multicellular organismal development	GO:0007275	Biological Process	-
Sma3	protein ubiquitination	GO:0016567	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Seven-in-absentia protein, sina	IPR004162	-	-
Sma3	Zinc finger, SIAH-type	IPR013010	-	-
Sma3	Seven In Absentia Homolog-type	IPR013323	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	Seven-in-absentia protein, TRAF-like domain	IPR018121	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AC11

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 259 - 293

Fln protein: A*AVVSTQSTRAAAVGSGKALIATIDPDTFECSICMEPLSPPIFQCSNGHIACSSCCVRMDSRCPSCLKPTGKIRCLAIEKLIESMKVGCKYAHNGCRELVRYSQMTAHESKCMYAPYLCPVSGCSFSGQSTQFSDHFKSLHGARVIQFRYEAWFTVSLATEEQFCILKGEDVIFLLQNKMRPLGNIVYATCIGPAFLEEHYSYQIEIKKGRRRLTMESVPRSIVGIHENRQDFLLTPVETYEEDGHLKFELSFRHVI*

Protein Length: 260

Fln nts: CTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGCAGCAGCAGTGGGCAGCGGCAAGGCCCTTATTGCCACTATTGATCCTGACACATTTGAATGTAGTATATGTATGGAGCCCCTTTCCCCCCCAATTTTCCAATGCTCAAATGGGCATATAGCCTGTTCCTCCTGCTGTGTTAGGATGGACAGTAGATGCCCTTCATGTCTCAAGCCTACTGGAAAGATCCGTTGTCTGGCCATTGAAAAATTGATTGAGTCCATGAAAGTAGGTTGCAAATATGCACATAATGGATGTAGAGAGTTGGTTAGGTATTCCCAAATGACTGCTCATGAGTCCAAATGTATGTATGCACCATACTTGTGTCCTGTTTCAGGATGCAGCTTTTCTGGTCAATCAACACAGTTTTCAGACCATTTCAAATCTCTGCACGGAGCTCGTGTGATTCAATTTAGATATGAGGCCTGGTTCACAGTATCGTTAGCCACAGAGGAGCAGTTCTGTATCTTAAAAGGTGAAGATGTGATTTTTCTTCTTCAGAATAAAATGAGACCTCTTGGAAATATAGTTTATGCAACTTGTATTGGACCAGCTTTTTTGGAGGAACACTATTCATACCAAATCGAGATAAAAAAGGGACGGCGGCGTTTGACAATGGAAAGCGTTCCTCGAAGTATTGTCGGGATTCATGAGAATCGTCAGGATTTCCTTCTTACTCCGGTGGAAACTTACGAGGAAGATGGACATCTCAAATTCGAGTTATCCTTTCGTCATGTAATATAA___TTCAAATATAGGCTATTTGTTTCTGCATGTGTATAAAGGGAAGGAATATTGTACTTGCATGGATAAACAGCGTTTAGTTTTTCTATATTTCCCATTTCGAGGCCCTAATGTTTGTTCCATTCAAATACGGCCTCTATTAGATTTGCTGTTGAGTTATAGAAAGTGGCTTCAGAGGCACTTGCATTAGTATTATTAATATGCTCCGTTGATTGCGTTTGGAAGGAATAGATGTTTGCGCGATCAATTTGTCTGCATAAACGTGTAGGGGAAATGGACCATCTCAAGCATAAGAAGTCGGTAAGAAGGAATGCCATTGCAAATAATGGGTTCAACTTTGTAACACATAAATTGCCACTTGTCTGTAATTCTACAGAAGAGACCATTTGTCACTTCTGTGTACAGAGGGATCATTAAATCCCATTATAGGAAAAAAATTGTAATATATTTTTCTCGAATAGTGGCTGCATATTTATGGTTCTCGTGTATGTCTAACCTCTGAAGTTTTTATGTACTTGTCTGGTTGGTTGGTG

Fln Alignment:

Contig2822___AAAVGSGKALIATIDPDTFECSICMEPLSPPIFQCSNGHIACSSCCVRMDSRCPSCLKPTGKIRCLAIEKLIESMKVGCKYAHNGCRELVRYSQMTAHESKCMYAPYLCPVSGCSFSGQSTQFSDHFKSLHGARVIQFRYEAWFTVSLATEEQFCILKGEDVIFLLQNKMRPLGNIVYATCIGPAFLEEHYSYQIEIKKGRRRLTMESVPRSIVGIHENRQDFLLTPVETYEEDGHLKFELSFRHVI
D5AC11______________AAAVGSGKALIAAIDPDAFECSICMEPLSPPIFQCSNGHIACSSCCVMMDNRCPSCLKPTGKIRCLAIEKLIESMKVGCRYAHNGCRELVRYSQMTAHESKCIYAPYLCSVSGCSFSGPSTQFSHHFTSVHGACVIHFRYEAWFTVLLATDEQFCILEGEDMIFLLQNKMKPLGNIVYATCIGPASSEDHYSYQIEIKKGRRRLTMESVPRSIVGIHEIRQDFLLIPVETYEEDGHLTLELSFRHVI

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
648		25		75	0.996473
714		80		20	0.995493
715			20	80	0.995493
716		80	20		0.995493
717		80	20		0.995493
746		80		20	0.995493
858	12		87		0.992554
1179		13		86	0.999973

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain