SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2811

Length: 1560 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene2811

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Catalytic, putative n=1 Tax=Ricinus communis RepID=B9RLA4_RICCO	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	e value	Identity
Sma3	catalytic activity	GO:0003824	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Metal-dependent phosphohydrolase, HD domain	IPR003607	-	0.0	-
Sma3	Metal-dependent phosphohydrolase, HD subdomain	IPR006674	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G26160.1	Metal-dependent phosphohydrolase chr1:9044784-9046945 REVERSE LENGTH=258	75%
RefSeq	Arabidopsis thaliana	NP_564240.1	Metal-dependent phosphohydrolase [Arabidopsis thaliana]	75%
RefSeq	Populus trichocarpa	XP_002309375.1	predicted protein [Populus trichocarpa]	74%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZ14

Fln msg:

Fln protein: MGTNTAIFHSSFFRRSMNPHSPSPSPSPCFSCPLKFNCREECWRTVSMQHQHLRRSVKPRALPGAERENGAYSEEQEAEDEQFVQSCSSPPSPSSAIDFLTLCQLLKTTKRTGWVNHGIQNAESIADHMYRMAAMALIVADVSGINRDRCVKMAIVHDIAEAIVGDITPSDGIPKEEKSRREREALDEMCKLLGGGVRAAEIRELWNEYENNSSPEANMVKDFDKVELILQALEYETEHGKILDEFFESTTGKFQTDVGKAWAAEILARRRKRIDHACKEQYHS*

Protein Length: 286

Fln nts: ATATATTAAAAAATTGCAACTACAACTTCCGAGTTTAAGAAAACATGTGTTAAGCATGAAACCGGCAATTGAGGGGAACAGGGAGAACAGGGATCGCCCCTTCAGATTCAATAAATAATTACTCCAGATTCGGCAAATTCCTCCTCCTCCCTTCCTTTGCTGAGACAGAA_-_ATGGGGACAAACACAGCGATCTTTCATTCATCCTTTTTCCGACGATCGATGAATCCTCACTCTCCATCTCCATCGCCATCTCCTTGCTTTTCTTGTCCTTTAAAGTTCAATTGCCGCGAAGAATGCTGGAGAACAGTAAGCATGCAGCATCAGCACCTCAGACGCTCAGTGAAACCAAGGGCGCTTCCCGGAGCCGAGCGTGAAAATGGCGCTTATTCGGAAGAACAGGAAGCAGAAGATGAACAATTCGTTCAGTCTTGTTCCTCCCCACCCTCTCCTTCGTCGGCAATTGACTTTCTCACTCTCTGTCAGCTACTCAAGACCACAAAAAGAACGGGATGGGTCAACCATGGAATACAGAATGCAGAATCCATAGCTGATCACATGTACCGAATGGCTGCAATGGCTCTCATTGTCGCAGATGTTTCTGGGATTAACAGAGACAGGTGTGTGAAGATGGCAATCGTTCATGATATTGCTGAAGCTATTGTTGGCGACATTACTCCCTCAGATGGTATACCCAAAGAAGAAAAAAGCAGAAGAGAAAGGGAGGCTTTGGATGAGATGTGCAAACTCCTTGGCGGAGGAGTGAGAGCTGCGGAAATAAGAGAGTTATGGAATGAATATGAAAATAACTCTTCTCCAGAAGCAAATATGGTAAAGGACTTTGATAAGGTAGAATTGATTCTACAGGCATTGGAGTATGAAACTGAACACGGGAAAATCTTGGATGAATTTTTCGAGTCTACCACAGGGAAATTTCAAACAGATGTTGGCAAGGCCTGGGCTGCTGAGATACTTGCGAGGAGAAGGAAAAGAATAGATCATGCCTGTAAAGAGCAATATCATTCATAG___GAAAAAGTGGCTTGTTACTGGCTGTCTATTGAACACTTCTAATTCAAATGACTAATTCTTTAGCACTTTCAGTTGCACTGAATGGGTTCCTACAGGCAAGTGGATCTCCACAAGAACTTGCTCATTCACCCAAAACTTGTAGCAAGCAATATTCATGATAAGTTTGATTCCTGCTTTATGAATTCACTTTCATTTCACTCTGTACATGGTTTGAAATGGTGGTAAGGAGTATCCTATGTGATTCTTACTCTTCCTGTATGACCGATGGAGGATATTGGATGGTACTCTTGTTGATACCATCCATATCAATGTATTTCTTTGAAAATCAATACAAAGAATAATATCAATCCAGAGATATATGCATGTCTTATAAATCGTGGCTTTTAATGGCTGACTTTATGCTATTAAAACACTAACTGCTTTTTGATTTTCTGGAGGAAACTCATGGGTGTCCTACATTTTTCAAATGATAAATGAACTTGGACATTTGTACGAAACTACAAGTTCCAAATATTAGACTATAATGGCTTTGTTT

Fln Alignment:

Contig2811___MGTNTAIFHSSFFRRSMNPHXXXXXXXXXXXXXLKFNCREECWRTVSMQHQHLRRSVKPRALPGAERENGAYSEEQEAEDEQFVQXXXXXXXXXX-AIDFLTLCQLLKTTKRTGWVNHGIQNAESIADHMYRMAAMALIVADVSGINRDRCVKMAIVHDIAEAIVGDITPSDGIPKEEKSRREREALDEMCKLLGGGVRAAEIRELWNEYENNSSPEANMVKDFDKVELILQALEYETEHGKILDEFFESTTGKFQTDVGKAWAAEILARRRKRIDHACKEQYHS
A9NZ14______________MGTNTAIFHSSFLRRSLNPHSPSPSPCVSNL--IKLNCREECWRTVSMQQQPLKGSVKPRALPGAEKANGAHSEEEEAEDDEALQSSSYSPPSPSSAIDFLTLCQMLKTTKRTGWVNHGIQNAESIADHMYRMAAMALIVADASGINRDRCVKMAIVHDIAEAIVGDITPSDGIPKEEKSRREREALDEMCRVLGGGVRAAEIRELWNEYENNSSPEANMVKDFDKVELILQALEYETEHGKILDEFFESTTGKFQTDVGKAWAAEILARRSKRIDHACKEQYHS

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
1235		88		11	0.923564
1255		85		14	0.993533
1265		50	50		1.0
1267		46		53	1.0
1282	40			60	1.0
1288	50	50			1.0
1342	50	50			1.0
1396		12		87	0.992554
1402	16		83		0.994512
1518	16	83			0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
139	150	TCC TCC TCC TCC	12

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain