SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2810

Length: 3110 nt

UniGene Fasta

>sp_v3.0_unigene2810
CTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGAAAGAAAGGAGGGGATTGTTGTATACTGGGCGAAGAGCAGGGAATATGAGGGCGAACAGTGGTAGTAGGGTAATGCATTTGAAAGAGATCAGAAGTTTGTACAAGGGTTGACAGGATCTACGAAGATTATTCATTTATGTTCTTTTTCCATCTAAAAGGTCATGAAAGCCTCCGCAAAAATGGTAATCTGCTAAACTTTTATCCTTTCGTTAAATTATTAAAAGACAGGAGGATGGGTTATGGTCATTTGCTTGAGATTTGCAATTCATTTAGATCACATTTGAGAAAACCGAACAAGCTTTTATGGGCTTTACAGTGGCAGAGTGGATATGTCAAGGGCCAGAGATCATCAGAAACCCTCTGTAACCCTCAAACCCAGGAATCGGATCATGTGGGATATATCGACAATGTGGGCATACGCATGGGATCTTATTGTTCAATTGGGTGTCCAAATATGTCATTTCAACACCAATATCCCTTCCATATTCTTTGTTTTGGGCATTTGCAGGCCCCTGGAAACCCTAGGGGTTTTACATGTGGCTCTTCTGTGAAATTTTCGAAGGAGAGTCCTTCTGACTGGACCGGTGAGGTTGTGTATTTAGATGAGTCAGGGGAGATAATCACCTCTAGCAAGGGAATAAGGTCTGTTAAGCCCGGGGAAGACGATCATATTCTGGTGGGTGGTGTGAAAAGAACCTTTACGAATGCAGAAATTGTGACGAAGATCCTTGACATTGTCAGGCGATGGAGATGGGGGCCTGAAATGGAGCTCCAGCTCGATCACTTGCATTTTCTACCGAACATGTCGCATATCAATCATGTCTTGAAAAGCCTCAACGAAGTGGATGTGGCGTTGGGCCTGTTCAATTGGGCCAAGAGGCAAAATTGGTATGCCCCCAATGAGCAAACATATCATCATTTGTTGGATGGCTTAATCAGGACTGCGGATTTTGATGGCATTCAATCTTTGCTTGAAGACATGAAGAATGAAGGAAGTGCTGTATCTTTTAGTGCTTACAATAAGGTGATCCGGTACTTCACAAAAACTGGCAAATTAGAGCCGGCTTTTAGCTGCTTTAAGCAAATGCAAGAAGCTGGGTGCCGGGCAGACACACAGACATATAACTCCCTGATTAGCTCATTTCTGAATACAGGCCTTCCGTATAAGGCGTTTGAGATCTATGAAGCCTTGGAAAAATCCGGTGGCAGTCCTGATGCAGAAACTTTTGAGATGTTGATTCCACAGCTGGCAAAATCGGGTAGACTCGATACCGCTATCAAACTTTTCGAAGAAATGAAAACTAAAGGCCTCCGCCCAAATGCTTTGATATTTACAACCCTTGTTGACTCATTGGGTAAGGCGGGGAGATTGGATATGACTATGAAGGTCTACATGGACATGCAGGCAGCTGGCTTTCGACCGTCTGCAAGTACGTTTGTTTCTCTGACAGAGTCATTTGTTAAGGCGGGAAAACTTGATATGGCATTAAAGGTCTGGCATGAGATGAAGGAGGCAGGCTTCAGACCAAATTATGGCCTGTACACTATGGTTGTTGAATCACATGCAAAAGCTGGAAAATTGGATATTGCAATGTCATTATTTTCAAACATGGAAAAGGCGGGGTTTTTGCCCATGGCATCTACATTTTGTTCTCTAGTGGAAATGCATGCTGCCCGTGGACAGGTTGATCAGGCTTTGAAACTTTATAACTCCATGACCAATTCGGGGTTAAGACTGACTCTAAGTGCTTATACATCATTATTGACAGCTTTGGCAAATAAAAAGATGTTGGACATGGCAGCGAAGATTTTATTGGACATGAAATCTGTAGGGTTTGCTGCTGATGTGAATGCAAGTGATGTTCTGATGATTTATATTAAGGAAGGTTCTGTTGAGATAGCTTTAAGATGGCTGAGATTCATGAGTTCTGCAGGGATAAGAACAAACAACTTCATTATTCGTCAACTTTTTGAATCGTGCATGAAGAACTGCCTTTACGAATCAGCACAACCCCTTCTTGAAACTTATGTCTCTTCTGCTGCCAAAGTGGATTTTATATTGTACACATCGATTCTAGCTCATCTTGTTAGATGTCAAGATGAGCAGAATGAAAAGGTTCTAATGTCTATTATGAGCACCACAAAACATAAGGCTCATTCATTTTTATGTGGACTTTTCAGTGGCCCAGAGCAGAGAAAGGAGCCGGTTCTTTCCTTCGTAAGGGCATTCTTTCAAAGTATTGACTATGAAGCAGAGGAAAGTGCGGCCAGGTACTTTGTGAATATGCTGTTGAACTATCTTGTGCTCGTGGGTCAAATAAATAGAGCCCGTTGTGTGTGGAAAGTTGCTTATGAAAATAAACTTTTCCCGAAGGCAATAGTCTTTGATCAACACATAGCTTGGTCGCTAGATGTCAGGCATTTGTCTGTTGGGGCTGCACTGATTGCTGTGGTACATACACTCCATAGGTTTAGAAAGCGAATGCTTTACTATGGTGTTATACCAAGAAGAATAAAAATTGTTACAGGGCCAACGCTGAAAATTGTGGTGGCACAGATTCTTGGTACAGTAAATTCTCCCTTTGAGGTTAGCAAGGTAGTTTTAAGAAGTCCAGGAGAAGCCGTCCTTGAGTGGTTTAAAAGGCCAATCGTTCAGCAATTCCTTTTAAATGAGATTCCTTCAAGAAGTGATATCCTCATGCACAGACTCAATACACTCTTTCCCTGTTCTTCACCTGAGATTCGATCTGCTTCATCCATGAGAACAACAAGCCTTCGCAATTAATGGCAAGGCTGATTTAACTGTTTTCTTCATATACAAGTCATTCTTGAAGTAGATGGTTAGCGGGAAATTTCCTATGGAAATTGATTTTTCAGAAATTTACATTGTTTTTTCTGTTAGCTTGCCATGTGAGTCAAGACTTGTTTTTCTTTCTTTCTAATGAAGTTAGACACAAGTAGACTTCTCGTTCTCGAAATTGAGCAAAGATTGTGTAGTTCCGTGCTAAATTGTAGGACGTGTTATGACTCAATTAAATTTAAATGATAAATGTCTGATATAATTTCAAAATTAG

Ace file of the UniGene sp_v3.0_unigene2810

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q9SAK0.1\|PP132_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g79490, mitochondrial; AltName: Full=Protein EMBRYO DEFECTIVE 2217; Flags: Precursor gb\|AAD30226.1\|AC00	-	-	0.0	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	23%

Source	Gene names
Sma3	At1g79490; EMB2217; GSVIVT00018904001; OSJNBa0070C17.14; Os04g0612800; OsI_17364; OsJ_16132; POPTRDRAFT_659351; RCOM_1643590; T8K14.9;

Source	GOs	Term	Type	e value	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Smr protein/MutS2 C-terminal	IPR002625	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Domain of unknown function DUF296	IPR005175	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G79490.1	EMB2217 Pentatricopeptide repeat (PPR) superfamily protein chr1:29900617-29903127 FORWARD LENGTH=836	68%
RefSeq	Arabidopsis thaliana	NP_178067.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	68%
RefSeq	Populus trichocarpa	XP_002316152.1	predicted protein [Populus trichocarpa]	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LL58

Fln msg: your sequence is longer than subject: 883 - 700

Fln protein: MFFFHLKGHESLRKNGNLLNFYPFVKLLKDRRMGYGHLLEICNSFRSHLRKPNKLLWALQWQSGYVKGQRSSETLCNPQTQESDHVGYIDNVGIRMGSYCSIGCPNMSFQHQYPFHILCFGHLQAPGNPRGFTCGSSVKFSKESPSDWTGEVVYLDESGEIITSSKGIRSVKPGEDDHILVGGVKRTFTNAEIVTKILDIVRRWRWGPEMELQLDHLHFLPNMSHINHVLKSLNEVDVALGLFNWAKRQNWYAPNEQTYHHLLDGLIRTADFDGIQSLLEDMKNEGSAVSFSAYNKVIRYFTKTGKLEPAFSCFKQMQEAGCRADTQTYNSLISSFLNTGLPYKAFEIYEALEKSGGSPDAETFEMLIPQLAKSGRLDTAIKLFEEMKTKGLRPNALIFTTLVDSLGKAGRLDMTMKVYMDMQAAGFRPSASTFVSLTESFVKAGKLDMALKVWHEMKEAGFRPNYGLYTMVVESHAKAGKLDIAMSLFSNMEKAGFLPMASTFCSLVEMHAARGQVDQALKLYNSMTNSGLRLTLSAYTSLLTALANKKMLDMAAKILLDMKSVGFAADVNASDVLMIYIKEGSVEIALRWLRFMSSAGIRTNNFIIRQLFESCMKNCLYESAQPLLETYVSSAAKVDFILYTSILAHLVRCQDEQNEKVLMSIMSTTKHKAHSFLCGLFSGPEQRKEPVLSFVRAFFQSIDYEAEESAARYFVNMLLNYLVLVGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRHLSVGAALIAVVHTLHRFRKRMLYYGVIPRRIKIVTGPTLKIVVAQILGTVNSPFEVSKVVLRSPGEAVLEWFKRPIVQQFLLNEIPSRSDILMHRLNTLFPCSSPEIRSASSMRTTSLRN*

Protein Length: 884

Fln nts: CTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGAAAGAAAGGAGGGGATTGTTGTATACTGGGCGAAGAGCAGGGAATATGAGGGCGAACAGTGGTAGTAGGGTAATGCATTTGAAAGAGATCAGAAGTTTGTACAAGGGTTGACAGGATCTACGAAGATTATTCATTT_-_ATGTTCTTTTTCCATCTAAAAGGTCATGAAAGCCTCCGCAAAAATGGTAATCTGCTAAACTTTTATCCTTTCGTTAAATTATTAAAAGACAGGAGGATGGGTTATGGTCATTTGCTTGAGATTTGCAATTCATTTAGATCACATTTGAGAAAACCGAACAAGCTTTTATGGGCTTTACAGTGGCAGAGTGGATATGTCAAGGGCCAGAGATCATCAGAAACCCTCTGTAACCCTCAAACCCAGGAATCGGATCATGTGGGATATATCGACAATGTGGGCATACGCATGGGATCTTATTGTTCAATTGGGTGTCCAAATATGTCATTTCAACACCAATATCCCTTCCATATTCTTTGTTTTGGGCATTTGCAGGCCCCTGGAAACCCTAGGGGTTTTACATGTGGCTCTTCTGTGAAATTTTCGAAGGAGAGTCCTTCTGACTGGACCGGTGAGGTTGTGTATTTAGATGAGTCAGGGGAGATAATCACCTCTAGCAAGGGAATAAGGTCTGTTAAGCCCGGGGAAGACGATCATATTCTGGTGGGTGGTGTGAAAAGAACCTTTACGAATGCAGAAATTGTGACGAAGATCCTTGACATTGTCAGGCGATGGAGATGGGGGCCTGAAATGGAGCTCCAGCTCGATCACTTGCATTTTCTACCGAACATGTCGCATATCAATCATGTCTTGAAAAGCCTCAACGAAGTGGATGTGGCGTTGGGCCTGTTCAATTGGGCCAAGAGGCAAAATTGGTATGCCCCCAATGAGCAAACATATCATCATTTGTTGGATGGCTTAATCAGGACTGCGGATTTTGATGGCATTCAATCTTTGCTTGAAGACATGAAGAATGAAGGAAGTGCTGTATCTTTTAGTGCTTACAATAAGGTGATCCGGTACTTCACAAAAACTGGCAAATTAGAGCCGGCTTTTAGCTGCTTTAAGCAAATGCAAGAAGCTGGGTGCCGGGCAGACACACAGACATATAACTCCCTGATTAGCTCATTTCTGAATACAGGCCTTCCGTATAAGGCGTTTGAGATCTATGAAGCCTTGGAAAAATCCGGTGGCAGTCCTGATGCAGAAACTTTTGAGATGTTGATTCCACAGCTGGCAAAATCGGGTAGACTCGATACCGCTATCAAACTTTTCGAAGAAATGAAAACTAAAGGCCTCCGCCCAAATGCTTTGATATTTACAACCCTTGTTGACTCATTGGGTAAGGCGGGGAGATTGGATATGACTATGAAGGTCTACATGGACATGCAGGCAGCTGGCTTTCGACCGTCTGCAAGTACGTTTGTTTCTCTGACAGAGTCATTTGTTAAGGCGGGAAAACTTGATATGGCATTAAAGGTCTGGCATGAGATGAAGGAGGCAGGCTTCAGACCAAATTATGGCCTGTACACTATGGTTGTTGAATCACATGCAAAAGCTGGAAAATTGGATATTGCAATGTCATTATTTTCAAACATGGAAAAGGCGGGGTTTTTGCCCATGGCATCTACATTTTGTTCTCTAGTGGAAATGCATGCTGCCCGTGGACAGGTTGATCAGGCTTTGAAACTTTATAACTCCATGACCAATTCGGGGTTAAGACTGACTCTAAGTGCTTATACATCATTATTGACAGCTTTGGCAAATAAAAAGATGTTGGACATGGCAGCGAAGATTTTATTGGACATGAAATCTGTAGGGTTTGCTGCTGATGTGAATGCAAGTGATGTTCTGATGATTTATATTAAGGAAGGTTCTGTTGAGATAGCTTTAAGATGGCTGAGATTCATGAGTTCTGCAGGGATAAGAACAAACAACTTCATTATTCGTCAACTTTTTGAATCGTGCATGAAGAACTGCCTTTACGAATCAGCACAACCCCTTCTTGAAACTTATGTCTCTTCTGCTGCCAAAGTGGATTTTATATTGTACACATCGATTCTAGCTCATCTTGTTAGATGTCAAGATGAGCAGAATGAAAAGGTTCTAATGTCTATTATGAGCACCACAAAACATAAGGCTCATTCATTTTTATGTGGACTTTTCAGTGGCCCAGAGCAGAGAAAGGAGCCGGTTCTTTCCTTCGTAAGGGCATTCTTTCAAAGTATTGACTATGAAGCAGAGGAAAGTGCGGCCAGGTACTTTGTGAATATGCTGTTGAACTATCTTGTGCTCGTGGGTCAAATAAATAGAGCCCGTTGTGTGTGGAAAGTTGCTTATGAAAATAAACTTTTCCCGAAGGCAATAGTCTTTGATCAACACATAGCTTGGTCGCTAGATGTCAGGCATTTGTCTGTTGGGGCTGCACTGATTGCTGTGGTACATACACTCCATAGGTTTAGAAAGCGAATGCTTTACTATGGTGTTATACCAAGAAGAATAAAAATTGTTACAGGGCCAACGCTGAAAATTGTGGTGGCACAGATTCTTGGTACAGTAAATTCTCCCTTTGAGGTTAGCAAGGTAGTTTTAAGAAGTCCAGGAGAAGCCGTCCTTGAGTGGTTTAAAAGGCCAATCGTTCAGCAATTCCTTTTAAATGAGATTCCTTCAAGAAGTGATATCCTCATGCACAGACTCAATACACTCTTTCCCTGTTCTTCACCTGAGATTCGATCTGCTTCATCCATGAGAACAACAAGCCTTCGCAATTAA___TGGCAAGGCTGATTTAACTGTTTTCTTCATATACAAGTCATTCTTGAAGTAGATGGTTAGCGGGAAATTTCCTATGGAAATTGATTTTTCAGAAATTTACATTGTTTTTTCTGTTAGCTTGCCATGTGAGTCAAGACTTGTTTTTCTTTCTTTCTAATGAAGTTAGACACAAGTAGACTTCTCGTTCTCGAAATTGAGCAAAGATTGTGTAGTTCCGTGCTAAATTGTAGGACGTGTTATGACTCAATTAAATTTAAATGATAAATGTCTGATATAATTTCAAAATTAG

Fln Alignment:

Contig2810___EIVTKILDIVRRWRWGPEMELQLDHLHFLPNMSHINHVLKSLNEVDVALGLFNWAKRQNWYAPNEQTYHHLLDGLIRTADFDGIQSLLEDMKNEGSAVSFS-------------------------------------AYNKVIRYFTKTGKLEPAFSCFKQMQEAGCRADTQTYNSLISSFLNTGLPYKAFEIYEALEKSGGSPDAETFEMLIPQLAKSGRLDTAIKLFEEMKTKGLRPNALIFTTLVDSLGKAGRLDMTMKVYMDMQAAGFRPSASTFVSLTESFVKAGKLDMALKVWHEMKEAGFRPNYGLYTMVVESHAKAGKLDIAMSLFSNMEKAGFLPMASTFCSLVEMHAARGQVDQALKLYNSMTNSG
B8LL58______________DTVNKICKAIEEDQWECLQDNFLNSMAQDLNPDAVVKVLNLQTDAQNALRFFQWADKQEGYDHNTDAYFTMIDILGRAKMFTELQSLLQKMQTQGREITRSMLHSFVMSYGRSGRFKESLEAFNLMKEMGYEPGLIDTAYNSVLVSLVKNKKLDMAENLFAQMINNGVSCNNLTYTSMIQCFFLKEKMEDAMKLLDDMIQNNYAPDVVTYTIVISALCKRKMIEQAYGVLQKMRENGCEPNIYTYNALIQGLCAVRRPEEALELVTLMEQGGVPPNIYTYTILTHGLCKLRRLDRAKEMFNEALARGLKPNRVTYNTLLNGYCRGSRLIEAMDILKEMHQNDCTPDHVTYTTLIQGLVQGNQLPDALRMHDEMENKG

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
2322	66		33		0.997452
2808	87		12		0.999964
2900	77		22		1.0
3001		12		87	0.992554
3029			33	66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
2964	2976	TTTC TTTC TTTC T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain