SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2804

Length: 2113 nt

UniGene Fasta

>sp_v3.0_unigene2804
CTCGGTATGTGCATCCAAGGTAGCAGCATCCAGGCGATGAAACAGGGGAGCTTTTATCTGTTGTGCGGTACATGAGTAAGAGAAGTGATAGCGTTTTTCTCCACAAAAGACGATGGATTTGTTTCGAGTTGCGTCCGATTTGGCCGAGAATTTAAGGTATTTCGCTAAATCCAGGGCACCTAGACGCAATTGTGCAATTTCTGCAACCATTTCCCATGTGGGTCCTGCGTTTCTAGATTTGTTTAGCAGAGTTTCAATGGATAATATTGCATGAAAAATTATTCCCAAGGGCGCCTTTTTAATTGGAAGCCAATATCTCTGAAAACAAAATGACAGAAACGTTCTTGACAGCTCTGTCCATGGAGAATCCTTCGACCCTGCTTTCGATGGATTCAAGCGCCCACGAAGAGTGCGAAACCGCCAGACAAACGGTAGTTTGTAGACCCCCTGATATTAACCTGCCATTATCGGTGGAGATAAGCCCTTTGCCATTTTGGCCGAATGATTCTTCTGACATTTTGGAGGCCGGTTTGGGGTCCCATAACCAGGAGCCAGAAGGGCTCCAGAGTCTCTCTAAAGTTGGCAAGAAGTGTGCCAGGCGGGGGGATAGCATTTGGGGCGCATGGTTTTTCTTCAATTACTACTTTAAGCCCGCCCTCGTTGAAAAAGCCAAGAACAAGCTTACAGAAGAGGGTGCAAGCTCCTGTATGTTTGAGAAATCAGACCTCCGCCTTGATTTGTTCCTGGTTCAACATGATATTGAGAATATGTATATGTGGATCTTCAAGGAGAGGCCTGAAAATGCATTGGGCAAGATGCAGCTTCGTAGCTATATGAATGGGCATGCTAGGCTTGGGGAGCCACAGTTCCCTTTTAGTGTCGAGAAAGGGTTTGTTCGATCTCATCGGATGCAGCGAAAACATTACAGAGGCTTGTCCAATCCTCAATGCCTTCACGGGATTGAGGTTTTGAGATCTCCTAACTTGTTGAATTTAAGTGAATCCGATCGGAAACGATGGATGGAGGTTACTGGTAGGGGTTTGGACTTCTCTATTCCATTGGATGCAGAGGCATTTTCATCTTGGAGGAACTGTCCTAACATTGATTTTGAGCTTGTAAACAGAAACCCTTTTAACTGCTTGAAGAAGCCTCCTGCGCTGAAAAACTGTCTCAATGGGTCTGGGTTAAATTTGTCCACTAAGTCCTTTAATGATGCAGTGGAGCTTTCTCCAAGTAATAAGAGGAGAAAGGAGTTAATTTCTTTGGACAACGAGGATGAATACTGTTTACCCACGACTTCACTTTTTGAAAGAAACCAGGACCTTGAAATTCAAATTCAGGATCATACACCATCTTGGGCGAATGATTTTTCGGGAGTGATGAGACATTCATGTGGACCTGTTACAGCAGCAAAGACTATTTATGAGGACGACAAAGGGTATTTGATTATGGTGAGCTTGCCTTTCACTGATATCAACAGGGTGAGAGTATCTTGGCGTAATACTGTAACACATGGTCTTGTCAAAGTTCATTGTATTAGTACATCTCGGGCTCCATATATTGTGAGAGGAGATAGGAACTTCAAACTTACAGATCCATCTCCTGAGCATTGCCCTCCTGGGGAGTTTGTGAGAGAGATAGCATTGGCAACAAGGATTCCCGAGAATGCAGAACTTGAAGCTTATTATGTCGAGGCTGCCGCAGGGCTTGAAATCATGGTACCCAAGCACCATGTTTTCTCAGGAGAGAGAGAAGTTCGAGTGTTTCTAAGATCGCAGTTGGGTTGCAATGATCTCATGAGCTGAGTAGGATACCGAAAAATAGTGCTTGATAAGGCATATATTGCTTACTAATACTGTGATGTAACCGAATGATAGGACACTGGCTAGAGCATTTTTATCTGTTGCACAATGTATACTGACCTCGCAAATTCTCTCCTTACTGATTTTACTTTTTCAATTTTTGTTCCACTTTTGCCTTTGGAGACAGATGATGTAAAGAACAGCATTGCTTCTGTAGGTGCCTTCCAGAGTAAGAGGTCCTTGCTCTTGTAAGACTAATCCTCTTCATATGAATTTTGTAACTGTTCTTTTGTCAATATATCTTTAAAACA

Ace file of the UniGene sp_v3.0_unigene2804

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein sodium-and lithium-tolerant 1 [Arabidopsis thaliana] gb\|AAC23628.1\| expressed protein [Arabidopsis thaliana] gb\|AAG39003.1\| SLT1 protein [Arabidopsis thaliana] gb\|AAK96858.1\| Unknown protein [Arabidopsis thaliana] gb\|AAM10070.1\| unknown protein [A	-	-	0.0	59%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	61%
Sma3	SLT1 protein	-	-	4.312e-17	-

Source	Gene names
Sma3	AT3G12570; At2g37570; At2g37570/F13M22.7; At3g12570; At5g02480; GSVIVT00018505001; GSVIVT00021302001; GSVIVT00024356001; LOC_Os03g16910; Os01g0151100; Os01g0840200; Os03g0277100; OsI_00421; OsI_04376; OsI_10988; OsJ_00395; OsJ_04025; OsJ_10335; P0009G03.1

Source	GOs	Term	Type	Identity
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	hyperosmotic salinity response	GO:0042538	Biological Process	-
Sma3	protein insertion into membrane	GO:0051205	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Membrane insertion protein, OxaA/YidC	IPR001708	-	-
Sma3	Heat shock protein Hsp20	IPR002068	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G37570.1	SLT1 HSP20-like chaperones superfamily protein chr2:15761466-15762950 REVERSE LENGTH=494	60%
RefSeq	Arabidopsis thaliana	NP_565864.1	protein sodium-and lithium-tolerant 1 [Arabidopsis thaliana]	60%
RefSeq	Populus trichocarpa	XP_002332579.1	predicted protein [Populus trichocarpa]	57%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: F6HLD7

Fln msg:

Fln protein: MTETFLTALSMENPSTLLSMDSSAHEECETARQTVVCRPPDINLPLSVEISPLPFWPNDSSDILEAGLGSHNQEPEGLQSLSKVGKKCARRGDSIWGAWFFFNYYFKPALVEKAKNKLTEEGASSCMFEKSDLRLDLFLVQHDIENMYMWIFKERPENALGKMQLRSYMNGHARLGEPQFPFSVEKGFVRSHRMQRKHYRGLSNPQCLHGIEVLRSPNLLNLSESDRKRWMEVTGRGLDFSIPLDAEAFSSWRNCPNIDFELVNRNPFNCLKKPPALKNCLNGSGLNLSTKSFNDAVELSPSNKRRKELISLDNEDEYCLPTTSLFERNQDLEIQIQDHTPSWANDFSGVMRHSCGPVTAAKTIYEDDKGYLIMVSLPFTDINRVRVSWRNTVTHGLVKVHCISTSRAPYIVRGDRNFKLTDPSPEHCPPGEFVREIALATRIPENAELEAYYVEAAAGLEIMVPKHHVFSGEREVRVFLRSQLGCNDLMS*

Protein Length: 493

Fln nts: CTCGGTATGTGCATCCAAGGTAGCAGCATCCAGGCGATGAAACAGGGGAGCTTTTATCTGTTGTGCGGTACATGAGTAAGAGAAGTGATAGCGTTTTTCTCCACAAAAGACGATGGATTTGTTTCGAGTTGCGTCCGATTTGGCCGAGAATTTAAGGTATTTCGCTAAATCCAGGGCACCTAGACGCAATTGTGCAATTTCTGCAACCATTTCCCATGTGGGTCCTGCGTTTCTAGATTTGTTTAGCAGAGTTTCAATGGATAATATTGCATGAAAAATTATTCCCAAGGGCGCCTTTTTAATTGGAAGCCAATATCTCTGAAAACAAA_-_ATGACAGAAACGTTCTTGACAGCTCTGTCCATGGAGAATCCTTCGACCCTGCTTTCGATGGATTCAAGCGCCCACGAAGAGTGCGAAACCGCCAGACAAACGGTAGTTTGTAGACCCCCTGATATTAACCTGCCATTATCGGTGGAGATAAGCCCTTTGCCATTTTGGCCGAATGATTCTTCTGACATTTTGGAGGCCGGTTTGGGGTCCCATAACCAGGAGCCAGAAGGGCTCCAGAGTCTCTCTAAAGTTGGCAAGAAGTGTGCCAGGCGGGGGGATAGCATTTGGGGCGCATGGTTTTTCTTCAATTACTACTTTAAGCCCGCCCTCGTTGAAAAAGCCAAGAACAAGCTTACAGAAGAGGGTGCAAGCTCCTGTATGTTTGAGAAATCAGACCTCCGCCTTGATTTGTTCCTGGTTCAACATGATATTGAGAATATGTATATGTGGATCTTCAAGGAGAGGCCTGAAAATGCATTGGGCAAGATGCAGCTTCGTAGCTATATGAATGGGCATGCTAGGCTTGGGGAGCCACAGTTCCCTTTTAGTGTCGAGAAAGGGTTTGTTCGATCTCATCGGATGCAGCGAAAACATTACAGAGGCTTGTCCAATCCTCAATGCCTTCACGGGATTGAGGTTTTGAGATCTCCTAACTTGTTGAATTTAAGTGAATCCGATCGGAAACGATGGATGGAGGTTACTGGTAGGGGTTTGGACTTCTCTATTCCATTGGATGCAGAGGCATTTTCATCTTGGAGGAACTGTCCTAACATTGATTTTGAGCTTGTAAACAGAAACCCTTTTAACTGCTTGAAGAAGCCTCCTGCGCTGAAAAACTGTCTCAATGGGTCTGGGTTAAATTTGTCCACTAAGTCCTTTAATGATGCAGTGGAGCTTTCTCCAAGTAATAAGAGGAGAAAGGAGTTAATTTCTTTGGACAACGAGGATGAATACTGTTTACCCACGACTTCACTTTTTGAAAGAAACCAGGACCTTGAAATTCAAATTCAGGATCATACACCATCTTGGGCGAATGATTTTTCGGGAGTGATGAGACATTCATGTGGACCTGTTACAGCAGCAAAGACTATTTATGAGGACGACAAAGGGTATTTGATTATGGTGAGCTTGCCTTTCACTGATATCAACAGGGTGAGAGTATCTTGGCGTAATACTGTAACACATGGTCTTGTCAAAGTTCATTGTATTAGTACATCTCGGGCTCCATATATTGTGAGAGGAGATAGGAACTTCAAACTTACAGATCCATCTCCTGAGCATTGCCCTCCTGGGGAGTTTGTGAGAGAGATAGCATTGGCAACAAGGATTCCCGAGAATGCAGAACTTGAAGCTTATTATGTCGAGGCTGCCGCAGGGCTTGAAATCATGGTACCCAAGCACCATGTTTTCTCAGGAGAGAGAGAAGTTCGAGTGTTTCTAAGATCGCAGTTGGGTTGCAATGATCTCATGAGCTGA___GTAGGATACCGAAAAATAGTGCTTGATAAGGCATATATTGCTTACTAATACTGTGATGTAACCGAATGATAGGACACTGGCTAGAGCATTTTTATCTGTTGCACAATGTATACTGACCTCGCAAATTCTCTCCTTACTGATTTTACTTTTTCAATTTTTGTTCCACTTTTGCCTTTGGAGACAGATGATGTAAAGAACAGCATTGCTTCTGTAGGTGCCTTCCAGAGTAAGAGGTCCTTGCTCTTGTAAGACTAATCCTCTTCATATGAATTTTGTAACTGTTCTTTTGTCAATATATCTTTAAAACA

Fln Alignment:

Contig2804___MTETFLTALSMEN--PSTLLSMDSSA--HEEC--ETARQTVVCRPPDINLPLSVEISPLPF-WPNDSSDILEAGLGSHNQEPEGLQSLSKVGKKCARRGDSIWGAWFFFNYYFKPALVEKAKNKLTEEGASSCMFEKSDLRLDLFLVQHDIENMYMWIFKERPENALGKMQLRSYMNGHARLGEPQFPFSVEKGFVRSHRMQRKHYRGLSNPQCLHGIEVLRSPNLLNLSESDRKRWMEVTGRGLDFSIPLDAEAFSSWRNCPNIDFELVNRNPFNCLKKPPALKNCLNGSGLNLSTKSFN----DAVELSP-SNKRRKELISLDNEDEYCLPTTSLFERNQDLEIQIQDHTPSWANDFSGVMRHSCGPVTAAKTIYEDDKGYLIMVSLPFTDINRVRVSWRNTVTHGLVKVHCISTSRAPYIVRGDRNFKLTDPSPEHCPPGEFVREIALATRIPXXXXXXXXXXXXXXXXXIMVPKHHVFSGEREVRVFLRSQLGCNDLM
F6HLD7______________MGDSLLTALSMENHHPSTLLSMDSSASSHEDLDLEMNRQIILTRPPDINLPLSAERSPPPPPWNSDQCDILEVGLAPQIYETESFLTIPKAGRKCAKRVDCIWGAWFFFSFYFKPALNEKSKAKIIRDSNGVSGFDKSDLKLEVFMVQHDMENMYMWVFKERPENALGKMQLRSYMNGHSRQGERLFPFSVDKGFVRSHRMQRKHYRGLSNPQCVHGIEVVPSPNLIGVDEEERKRWMELTGRDMNFSIPPEASDFSSWRNLPNTDFELERPPPPVKSNSNSHSKKLLNGSGLNLSTQPSNHSNGDGMDLSPVSSKRRKDFFPHGNDDDCYLAVNPPSDRVQDME--IHPNEPPWLNDFSGVMRNVYGPVTAAKTIYEDVEGYLIIISLPFVDLQRVKVSWRNTLTHGIIKVSCVSTSRRPFIKRHDRTFKLTDPSSEHCPPGEFIREIPLSTRIPEDANIEAYYDGPGTTLEILVPKLRVGPEEHEVRVCLRPHLAANELM

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
1408		10	90		0.90298
1409		90		10	0.90298
1414	90		10		0.90298
1415	90	10			0.90298
1444	11			88	0.923564
1445		11		88	0.923564
1489			88	11	0.923564
1490			11	88	0.923564
1491	88		11		0.923564
1492			11	88	0.923564
1546		11		88	0.923564
1547	11	88			0.923564
1549		88		11	0.923564
1597		90		10	0.90298
1634	12		87		0.992554
1635	87			12	0.992554
1839	71		28		1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain