SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2786

Length: 679 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene2786

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ERF protein n=1 Tax=Glycine max RepID=D9IXB2_SOYBN	-	-	7.0e-21	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	61%
Sma3	AP2/ERF domain-containing transcription factor	-	-	1.044e-22	-

Source	Gene names
Sma3	24.t00032; 25.t00062; 26.t00057; ACRE1; Aa1_7580; Aa6_7580; At2g44840; At3g23230; At4g17490; At4g17500; At5g07580; At5g13330; At5g47220; At5g47230; At5g51190; At5g61590; B1234D02.6; BIERF2; BIERF3; Bd5g07580; C635ERIPDM; CDBP; Cr_7580; DDTFR10/A; DRE; DRE

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	plastid	GO:0009536	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	transcription activator activity	GO:0016563	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	fruit ripening	GO:0009835	Biological Process	-
Sma3	induced systemic resistance, jasmonic acid mediated signaling pathway	GO:0009864	Biological Process	-
Sma3	ethylene mediated signaling pathway	GO:0009873	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-
Sma3		GO:0045941	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Signal recognition particle, SRP54 subunit, GTPase	IPR000897	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	AP2/ERF domain	IPR001471	-	-
Sma3	DNA ligase, ATP-dependent, conserved site	IPR016059	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G07580.1	Integrase-type DNA-binding superfamily protein chr5:2399525-2400349 FORWARD LENGTH=274	6.0e-25	48%
RefSeq	Arabidopsis thaliana	NP_196375.2	ERF/AP2 transcription factor [Arabidopsis thaliana]	7.0e-25	48%

Full-Lengther Next Prediction

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
164		87		12	0.992554
177	87		12		0.992554
228		25	75		1.0
431		14	85		0.993533
432	85		14		0.993533
435		83	16		0.994512
440	83			16	0.994512
441	83			16	0.994512
446		16	83		0.994512
447			83	16	0.994512
453		16	83		0.994512
454	83			16	0.994512
455	83	16			0.994512
456	14			85	0.993533
469		10		90	0.90298
470			10	90	0.90298
654	85		14		0.993533
656		85		14	0.993533
660	85		14		0.993533

SSRs (tot: 1)

Start position	End position	Sequence	Length
275	286	TCT TCT TCT TCT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain