SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2767

Length: 1410 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene2767

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pollen major allergen No.121 isoform 1 n=1 Tax=Cryptomeria japonica RepID=Q588C0_CRYJA	-	-	0.0	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%
Sma3	Xyloglucan endotransglycosylase	-	-	2.866e-33	-

Source	ECs	Term	Type	e value	Identity
Sma3	Xyloglucan:xyloglucosyl transferase.	EC:2.4.1.207	-	0.0	-

Source	Gene names
Sma3	19-1-5; AoXET1; AoXET2; At2g18800; At3g23730; At4g03210; At4g14130; At4g25810; At4g25820; At4g30270; At4g37800; At5g13870; At5g57530; At5g57540; At5g57550; At5g57560; At5g65730; EXGT; EXGT-A4; EXGT-A5; EXGT-A6; EXGT-N2; EXT; F14M19.100; F14M19.90; FCAALL.

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	xyloglucan:xyloglucosyl transferase activity	GO:0016762	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	cellular glucan metabolic process	GO:0006073	Biological Process	-
Sma3	cellular cell wall organization	GO:0007047	Biological Process	-
Sma3	response to heat	GO:0009408	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	response to mechanical stimulus	GO:0009612	Biological Process	-
Sma3	plant-type cell wall organization	GO:0009664	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	response to brassinosteroid stimulus	GO:0009741	Biological Process	-
Sma3	cell wall modification	GO:0042545	Biological Process	-
Sma3	primary root development	GO:0080022	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 16	IPR000757	-	-
Sma3	Glycoside hydrolase, family 16, active site	IPR008263	-	-
Sma3	Beta-glucanase	IPR008264	-	-
Sma3	Xyloglucan endo-transglycosylase, C-terminal	IPR010713	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Xyloglucan endotransglucosylase/hydrolase	IPR016455	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-
Sma3	DNA topoisomerase, type IIA, conserved site	IPR018522	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G03210.1	XTH9 xyloglucan endotransglucosylase/hydrolase 9 chr4:1416019-1417197 FORWARD LENGTH=290	49%
RefSeq	Arabidopsis thaliana	NP_192230.1	xyloglucan endotransglucosylase/hydrolase protein 9 [Arabidopsis thaliana]	49%
RefSeq	Populus trichocarpa	XP_002321087.1	predicted protein [Populus trichocarpa]	54%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNK0

Fln msg: your sequence is longer than subject: 338 - 275

Fln protein: MHCNLTWPYLHMAPCMLRSSTTMSMLLSIVFLLLWGTAASSRVNSGNFYQDFDISWAPDHARFLNGGQQMQLLLDRASGSGFASKKKFLFGNIGMQIKLVPGDSAGTVTAYYLSSNAGPKHDEVDFEFLGNVSGEPYIVQTNIYAHGIGKREQRIYLWFDPTADFHTYSIEWNPHHIIFYVDATPIRVYKNNEAMGVPFLNRQAMAVFSSLWNADDWATQGGQVKTNWSNAPFAASYKNFRVERACQVRSNRHISKCLQHHKTTFTNSSSSAINTSTTSLHENGEGSSSAPGGIGAVEKKEILARLNWVRKNYMIYDYCADKNRYPVPPPECRSLVL*

Protein Length: 339

Fln nts: ACTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGATACTTGTAAGTTGTCATACTCTCCCCTCACTCCACCACTTGGT_-_ATGCACTGCAACCTGACGTGGCCTTACTTGCACATGGCTCCCTGCATGCTGAGATCGTCAACTACAATGTCAATGTTACTATCGATCGTGTTTTTGCTTCTGTGGGGGACGGCTGCAAGCAGCAGAGTGAATAGTGGGAATTTCTACCAGGACTTCGACATCAGTTGGGCTCCTGATCATGCCAGATTCCTCAATGGAGGCCAACAGATGCAGCTCTTGCTTGACCGAGCCTCAGGATCAGGCTTCGCCTCCAAGAAGAAGTTTCTGTTTGGCAACATTGGAATGCAAATAAAGTTGGTGCCCGGAGACTCAGCTGGAACTGTCACTGCTTACTATCTCTCTTCGAATGCAGGGCCAAAGCATGATGAAGTGGATTTCGAATTTCTGGGTAATGTGTCTGGGGAGCCTTACATCGTGCAGACGAACATATACGCCCATGGAATTGGCAAGAGAGAGCAACGCATTTATTTGTGGTTCGACCCCACTGCGGACTTTCACACATATTCCATTGAGTGGAACCCGCACCACATCATATTCTATGTGGACGCCACTCCCATCAGAGTGTACAAGAACAATGAAGCAATGGGGGTGCCGTTCCTGAACAGGCAAGCCATGGCAGTTTTCTCCAGCTTGTGGAATGCGGATGATTGGGCGACTCAGGGAGGGCAAGTGAAGACCAATTGGAGCAACGCTCCCTTTGCTGCTTCTTACAAAAACTTCCGCGTTGAGAGGGCGTGCCAAGTGAGATCAAATAGACACATCTCCAAGTGCCTGCAGCACCACAAAACTACTTTTACTAACTCTTCCTCATCCGCCATCAATACTAGTACTACTTCGCTCCATGAAAATGGAGAGGGCTCAAGCTCAGCACCGGGGGGCATTGGAGCGGTGGAGAAAAAAGAGATATTGGCGAGGTTGAACTGGGTGCGCAAAAATTACATGATCTATGACTACTGCGCAGACAAAAACAGATATCCCGTTCCTCCGCCAGAATGCCGCAGTTTAGTTCTCTAA___AGCAAGCAGTACATTAATTTTTTCAAAATCTAAAGAGTGTATAGTACCAGTGGGTTTATATTTCCTAGTTTGCTTACAATAACGATGGGGATTCACCAGTTTTTGTAGAATTTGCAATCATCGGATGGCAATTTCAAAGTTTTCTCTAAGTCACCCGCATCGATGTCGAGAAGCCTTCCATTTTCAATTATTTAATATTAGAAAATCTTTCGAGAAGCCTTCCATTTTCAATTATTTAATATCAGAAAATCTTTTGAGTTAACCAAAATTTAACACGCCGACGCATAAGTCAAATTGAGTTTGCTTGTGGATAT

Fln Alignment:

Contig2767___LWGTAASSRVNSGNFYQDFDISWAPDHARFLNGGQQMQLLLDRASGSGFASKKKFLFGNIGMQIKLVPGDSAGTVTAYYLSSNAGPKHDEVDFEFLGNVSGEPYIVQTNIYAHGIGKREQRIYLWFDPTADFHTYSIEWNPHHIIFYVDATPIRVYKNNEAMGVPFLNRQAMAVFSSLWNADDWATQGGQVKTNWSNAPFAASYKNFRVERACQVRSNRHISKCLQHHKXXXXXXXXXXXXXXXXXLHENGEGSSSAPGGIGAVEKKEILARLNWVRKNYMIYDYCADKNRYPVPPPEC
A9NNK0______________LLGTIGSSV--GSDLDTEFYVSWAADHVKFLKGGEELHLTLDQVSGSGFASKNKYLFGNINMQIKLVPGDSAGTVTAFYLSSQ-GLNHDELDFEFLGNKSGEPYVLQTNVYASGKGDREQRIYLWFDPSTEFHTYGVIWNTAYILFMVDEVPIRVFMNNKALGVPYPERQAMGVFSSIWNGDSWATQGGLVKIDWSHAPFVAAYRNFQSYQA--VASSMEGSE----------------------------ESEPLTPG-----QKN----KLDWVKRNYMIYDYCEDKQRYPVPPPEC

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
671			88	11	0.923564
842	80			20	0.995493
843	20			80	0.995493
844		80		20	0.995493
1090	1			92	1.0
1112	96		3		0.989722
1295		21		78	1.0
1328	16			83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain