SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2733

Length: 1676 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene2733

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Late embryogenesis abundant-like protein (Fragment) n=19 Tax=Picea sitchensis RepID=E0ZAL6_PICSI	-	-	91%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Phospholipase A2, active site	IPR013090	-	-
Sma3	Root cap	IPR009646	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G19430.1	late embryogenesis abundant protein-related / LEA protein-related chr3:6736382-6738330 REVERSE LENGTH=559	53%
RefSeq	Arabidopsis thaliana	NP_188574.2	late embryogenesis abundant protein-like protein [Arabidopsis thaliana]	53%
RefSeq	Populus trichocarpa	XP_002313866.1	predicted protein, partial [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NSR1

Fln msg:

Fln protein: MAFKWALVAVTCCLVAGAAQVSAWKASCQDPYYGGCYGIAHACPPGCPRVCEVDCKLCKPICACDKPGAVCQDPRFIGGDGIMFYFHGKKDRDFCLVSETNLQINGHFIGKSKEGGLKRDFTWVQSIGVQFDSHKLYLGANKVAKWDDARDELSLFLDNEPIVLPPGRGAEWESTSAPGLKISRLQDANSVTVHVAESVTITARVVPITAEESRIHKYEITEDDCFAHLELNFKFLALSPHVTGVLGQTYSAGFKSPVKVGVAMPIMGGEDKFAASGLFDADCKVTRFAGRAIESVAGHNFPEVACGSGSAAGRGIVCRK*

Protein Length: 322

Fln nts: GGAATGAGAGCGATGGGCATGTGAACACCGCAGCAGCACTGCCCAGTGCCAACCACCCACCACCTCATCTCCCTTCTGCAGAAAGGACAGGATGCACGTGAAAGCCCTTTAGCCTCTGGCCAAATGCATGGACCTCCGTTCACCCTACAGATCTATATAATCTGCCTTTTATCTTCCATGGCTATACAGTGTAATAGTTCGCTGAGCAAAA_-_ATGGCTTTCAAGTGGGCTCTGGTTGCTGTTACCTGTTGCCTTGTTGCAGGAGCAGCCCAAGTTAGCGCATGGAAGGCTAGTTGCCAGGATCCTTACTATGGGGGTTGCTATGGGATTGCTCATGCCTGCCCTCCTGGTTGTCCCAGGGTCTGTGAAGTGGATTGCAAGCTCTGCAAACCAATTTGTGCCTGTGACAAGCCGGGCGCAGTGTGCCAGGACCCCAGATTCATAGGCGGGGATGGCATTATGTTCTACTTTCATGGCAAGAAGGACCGGGATTTCTGCCTTGTCTCCGAGACCAATCTACAGATCAATGGGCATTTCATTGGCAAGAGCAAAGAGGGGGGTTTAAAGCGCGATTTCACGTGGGTGCAGTCCATAGGTGTGCAGTTCGATTCCCACAAACTCTACTTGGGCGCTAACAAGGTTGCCAAGTGGGACGATGCCCGCGACGAGCTCTCTCTCTTCCTGGACAACGAGCCGATAGTCCTCCCGCCGGGCCGTGGCGCCGAGTGGGAGTCCACGTCGGCGCCCGGGCTCAAGATCAGCCGCCTCCAGGACGCAAACAGCGTCACCGTCCATGTGGCCGAGAGCGTCACCATCACGGCCCGAGTGGTACCCATCACCGCAGAGGAGTCGAGAATCCACAAATATGAGATCACCGAAGACGACTGCTTCGCCCATCTGGAGCTCAACTTCAAGTTCTTGGCTCTCAGTCCCCATGTGACCGGGGTCCTGGGGCAGACCTATTCGGCCGGTTTCAAGAGCCCCGTGAAGGTCGGCGTGGCCATGCCCATCATGGGAGGAGAAGATAAGTTTGCGGCCTCGGGTCTCTTTGATGCTGACTGCAAGGTCACAAGGTTTGCAGGTCGCGCGATCGAATCTGTGGCCGGACACAACTTCCCTGAAGTTGCCTGCGGTAGTGGCAGCGCAGCTGGACGTGGTATTGTGTGCCGGAAGTAG___CACAGTTTTCTGTAACAATATCCAGCAGTATCTAACAATAAATTCTGCTTTCCTGTACTAGTATTATAGCTTTTACTTTATAATAATAATATGTAGTGGATACTGTACTCTAAGGCCATTTCTAATGATCTGTGCTTAACAATAGGGGTGGAATATGATCTGTCTAGGTGGTTAGCTACGAGGTTCAGCAAAGGCTGCTTTGTAAGTTTGTATAATGTATCTGAGAACACTCCTGGTGTTCTGTGTTTCATAGTCTGCATAGGGTATGCTCAGCCTTGGTGGTCAGCTATGAGGTTTGTTCAGCAAAGGCTGAAAGGTAGGAGTTACTTTGAATAAGGTTGGATGCTTTTAATTGTATAAGTACAGTTGAAATCTTAATAATGCATCATTATCCAGTTTGTATTCCTCTTATAATTATAAGAAGATTCTAACAGCTTAAGAAGGTACCCGGCATTGTATAACTTCCTTTTGGGTTTGGGTACACGAAGGTCAATGGGGTGTA

Fln Alignment:

Contig2733___MAFKWALVAVTCCLVAGAAQVSAWKASCQDPYYGGCYGIAHACPPGCPRVCEVDCKLCKPICACDKPGAVCQDPRFIGGDGIMFYFHGKKDRDFCLVSETNLQINGHFIGKSKEGGLKRDFTWVQSIGVQFDSHKLYLGANKVAKWDDARDELSLFLDNEPIVLPPGRGAEWESTSAPGLKISRLQDANSVTVHVAESVTITARVVPITAEESRIHKYEITEDDCFAHLELNFKFLALSPHVTGVLGQTYSAGFKSPVKVGVAMPIMGGEDKFAASGLFDADCKVTRFAGRAIESVAGHNFPEVACGSGSAAGRGIVCRK
A9NSR1______________MACKWVLFAVACCLVA-AAQVRAWKASCQDPYYGSCYGIAHVCPPGCPRVCEVDCKLCKPICACDKPGAVCQDPRFIGGDGIMFYFHGKKDRDFCLVSETNLHINGHFIGKSKKQGLKRDFTWVQSIGVQFDSHKLYLGANKVAKWDDARDELSLLLDDQPIVLPPGRGADWESASAPGLKISRLQDANSVTVEVAESFVITARVVPITAEESRIHKYEITEDDCFAHLELNFKFFALSPQVTGVLGQTYSAGFKSPVKVGVAMPIMGGEDKFAASDLFAADCKVARFAGRAIESVAGHNFPEVACGSGSAAGRGIVCRK

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
867	90		10		0.90298
868			10	90	0.90298
1096	6		93		0.999453
1192	4	95			0.995881
1562	96	3			0.982166
1573	5		92	1	0.999979
1578		4		93	0.976545
1580	2			93	0.983471
1581		4		95	0.996599
1582	4	95			0.99692
1589		5		94	0.998397
1611	26		73		1.0
1623	75	25			1.0
1625	16	83			0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
1254	1265	ATA ATA ATA ATA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain