SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2717

Length: 918 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene2717

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative polygalacturonase PG1 [Oryza sativa Japonica Group] dbj\|BAD30173.1\| putative polygalacturonase PG1 [Oryza sativa Japonica Group] gb\|EEE66781.1\| hypothetical protein OsJ_23515 [Oryza sativa Japonica Group]	-	-	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	43%
Sma3	Polygalacturonase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Polygalacturonase.	EC:3.2.1.15	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Pentose and glucuronate interconversions	00040		0.0	%
Sma3	Starch and sucrose metabolism	00500		0.0	%
Sma3	Metabolic pathways	01100		0.0	%
Sma3	Galacturan 1,4-alpha-galacturonidase.	EC:3.2.1.67	-	2.686e-35	-

Source	KEGGs	Term	e value	Identity
Sma3	Pentose and glucuronate interconversions	00040	2.686e-35	%
Sma3	Starch and sucrose metabolism	00500	2.686e-35	%
Sma3	Metabolic pathways	01100	2.686e-35	%

Source	Gene names
Sma3	ADPG1; ADPG2; AT4g13760; At1g05650; At1g05660; At1g43080; At1g43090; At1g43100; At1g65570; At1g70500; At1g80170; At2g15460; At2g15470; At2g26620; At2g40310; At2g41850; At2g43860; At2g43870; At2g43880; At2g43890; At3g07970; At3g15720; At3g26610; At3g26610/

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	amyloplast	GO:0009501	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	anchored to plasma membrane	GO:0046658	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	polygalacturonase activity	GO:0004650	Molecular Function	-
Sma3	threonine-tRNA ligase activity	GO:0004829	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	IgE binding	GO:0019863	Molecular Function	-
Sma3	galacturan 1,4-alpha-galacturonidase activity	GO:0047911	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	threonyl-tRNA aminoacylation	GO:0006435	Biological Process	-
Sma3	cellular cell wall organization	GO:0007047	Biological Process	-
Sma3	cell wall modification involved in abscission	GO:0009830	Biological Process	-
Sma3	fruit ripening	GO:0009835	Biological Process	-
Sma3	anther dehiscence	GO:0009901	Biological Process	-
Sma3	fruit dehiscence	GO:0010047	Biological Process	-
Sma3	floral organ abscission	GO:0010227	Biological Process	-
Sma3	pectin catabolic process	GO:0045490	Biological Process	-
Sma3	pollen sperm cell differentiation	GO:0048235	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Glycoside hydrolase, family 28	IPR000743	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain	IPR002314	-	-
Sma3	Threonyl-tRNA synthetase, class IIa	IPR002320	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Anticodon-binding	IPR004154	-	-
Sma3	Aminoacyl-tRNA synthetase, class II	IPR006195	-	-
Sma3	Parallel beta-helix repeat	IPR006626	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Pectin lyase fold	IPR012334	-	-
Sma3	Threonyl/alanyl tRNA synthetase, SAD	IPR012947	-	-
Sma3		IPR017909	-	-
Sma3		IPR018158	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002310385.1	predicted protein [Populus trichocarpa]	0.0	46%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQB8

Fln msg: STOP codon was not found. Distance to subject end: 10 aas, your sequence is shorter than subject: 305 - 440

Fln protein: MTFQLLGGLLASTNNNLYSSYWLQFQGVNRLTFQGGGYLNGQGASWWAQTCAKNGVCTATAVSMIFYSCTDLIVRNIKSINSKQFHVAFFGCNRVQAKGLIIRAPGDSPNTDGIHVQQSSNVKILGVNIGTGDDCISIGPGTSNVFVQGVHCGPGHGISVGSLGKDSNPSIGVSNVIVEQASFSGTQNGFRIKTWQGGKGFAKNITFENAKMVNVSNPIIIDQYYCPYSYSCSSQGSSGVTISGVSYKNIIGTSATQVAISLSCGPSVPCQGIELQNVQLSYKIHGVESSKAQCKDVKGTKTGVV

Protein Length: 306

Fln nts: TATGACCTTTCAGTTGTTGGGAGGCCTCTTGGCTTCTACGAACAACAACCTATATTCAAGCTATTGGCTGCAGTTCCAGGGCGTGAACAGGCTTACATTTCAAGGAGGGGGATATCTCAACGGACAGGGAGCCTCTTGGTGGGCTCAGACCTGTGCCAAAAATGGTGTATGTACAGCAACAGCCGTGTCAATGATATTCTATAGTTGCACAGACCTCATCGTCAGAAACATTAAATCCATCAACAGCAAGCAATTTCACGTGGCCTTTTTCGGGTGCAATCGCGTACAGGCGAAGGGATTGATTATCCGGGCTCCGGGAGACAGTCCAAACACCGATGGGATTCATGTGCAGCAATCTTCCAACGTGAAGATTCTCGGTGTTAATATAGGGACGGGAGATGACTGTATTTCCATCGGACCAGGCACTTCCAATGTATTTGTTCAGGGTGTTCATTGTGGACCAGGTCATGGAATAAGTGTGGGAAGCCTAGGTAAAGATTCCAATCCTAGCATAGGTGTAAGCAACGTCATAGTGGAACAAGCCTCCTTCTCGGGTACCCAAAACGGTTTTAGGATCAAAACATGGCAGGGAGGGAAAGGATTTGCTAAGAATATAACATTTGAGAATGCAAAGATGGTCAACGTATCCAATCCAATCATAATTGATCAGTATTATTGCCCCTATTCCTATAGCTGCTCTAGTCAGGGATCCAGTGGTGTGACCATCAGTGGAGTTTCATATAAAAACATAATTGGCACATCAGCCACACAAGTGGCCATTTCTCTTTCATGCGGCCCTAGTGTTCCCTGCCAAGGAATCGAGTTGCAGAATGTGCAGCTCAGCTACAAGATTCATGGGGTAGAATCTTCAAAGGCTCAGTGTAAAGATGTAAAAGGGACAAAGACGGGTGTGGTGAA

Fln Alignment:

Contig2717___MTFQLLGGLLASTN----NNLYSSYWLQFQGVNRLTFQGGGYLNGQGASWWAQTCAK--NGVCTATAVSMIFYSCTDLIVRNIKSINSKQFHVAFFGCNRVQAKGLIIRAPGDSPNTDGIHVQQSSNVKILGVNIGTGDDCISIGPGTSNVFVQGVHCGPGHGISVGSLGKDSNPSIGVSNVIVEQASFSGTQNGFRIKTWQGGKGFAKNITFENAKMVNVSNPIIIDXXXXXXXXXXXXXXXXXXXXXXXXXKN-----IIGTSATQVAISLSCGPSVPCQGIELQNVQLSYKIHGVESSKAQCKDVKGTKTGVV
C0PQB8______________LTAQISGRIVAPADPCNWNPEDRTIWLQFSKVQGLTIHGGGIIDGSGEKWWAGSCSRDQNKVCLSVPFAFVVNSSSNVHLRDLTFQNSQKFHVVISLSKHVEVENLQIVAPGDSPNTDGIHIFTSEHVMIRNCTIATGDDCVSIIAQSSHIQVNDIICGPGHGISIGSLGK-YNATDTVSDVVVNRASLSGTQNGLRIKTWQGGSGYAQGIIFQHVKMINVSNPIIIDQYYCAGSSRCNQPAPCNNQTSAVQVNNVTYTGITGTSATQEAIKLACSATVPCTNIVLEDISL--QLNNGDTPSSLSANVQGSSTGQV

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
742	75			25	0.996473
773	50		50		1.0
815	50		50		1.0
827	25		75		0.996473
873	50	50			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain