SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2705

Length: 1718 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene2705

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	GrpE protein homolog n=1 Tax=Picea sitchensis RepID=A9NPB5_PICSI	-	-	77%
FL-Next	sp=GrpE protein homolog; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Sma3	GrpE protein homolog	-	-	-

Source	GOs	Term	Type	Identity
Sma3	adenyl-nucleotide exchange factor activity	GO:0000774	Molecular Function	-
Sma3	chaperone binding	GO:0051087	Molecular Function	-
Sma3	protein homodimerization activity	GO:0042803	Molecular Function	-
Sma3	protein folding	GO:0006457	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	GrpE nucleotide exchange factor	IPR000740	-	-
Sma3	GrpE nucleotide exchange factor, coiled-coil	IPR013805	-	-
Sma3	GrpE nucleotide exchange factor, head	IPR009012	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G17710.2	-	60%
RefSeq	Arabidopsis thaliana	NP_568356.1	molecular chaperone GrpE [Arabidopsis thaliana]	60%
RefSeq	Populus trichocarpa	XP_002319738.1	predicted protein [Populus trichocarpa]	64%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPB5

Fln msg:

Fln protein: MASTALAGAAVFVISQSGFKSSRTKLNPCSQFRISVKNSGHFTKRAAMGFVPLNPVNRRCSRFVVYQKVAETESKQVEEESDDELEESDTEESKAATTEKKPASLVSTLLEAYKEAIANSDDVRVSEIEVQLQAIEDEKIALSKLVATLTEEASTGKEKLLRLNADFDNFRKRAEKERLSLASNIQGDVIESLLPMVDNFERAKTQIKIQTEGEEKIDKSYQGIYKQFVEIMKGFNVNVVNTVGKPFDPMLHEAIMREDSTLFEEGIIIEEFRRGFILGDKLLRPAMVKVSAGPGPAKAAEDCENAAEHSAESAEECKETTKDANASDSSDVSEEKEA*

Protein Length: 340

Fln nts: TGTGGGGAAATTGCGAATCCGCTAAATTTTCTTAGTTTGACTTGAGACGCAGAAACATCTAGACACCATCTTGTTATCCAAGTTCCATGGGGACCCTCTTTCATCTGAGTTCTTTCTCTTTTCTTTTTTCTGGTTACTTTCGTTGGTAGGGTTTGGAATCCCGGACCTCGAGAAAGCCTTCA_-_ATGGCGTCCACTGCTTTAGCAGGTGCGGCTGTCTTCGTTATATCTCAGTCCGGCTTCAAATCATCTCGAACCAAGCTGAATCCTTGTTCGCAATTCCGAATTTCTGTTAAAAACAGTGGACATTTTACTAAGAGAGCTGCCATGGGATTTGTACCGTTAAATCCCGTCAACAGACGGTGTTCGAGGTTCGTTGTGTACCAAAAGGTTGCAGAAACGGAGTCGAAGCAGGTGGAGGAAGAAAGTGATGATGAGCTTGAGGAAAGTGATACAGAGGAGTCCAAGGCCGCTACTACAGAGAAAAAACCTGCATCTCTTGTTTCTACTTTGTTGGAGGCTTATAAAGAAGCCATTGCAAACAGTGATGATGTTCGGGTTTCTGAAATAGAGGTACAGCTTCAGGCTATTGAGGATGAAAAGATTGCTTTGTCTAAGCTGGTTGCAACTTTAACAGAAGAGGCATCAACAGGAAAGGAGAAGTTACTACGTCTAAATGCAGATTTTGACAATTTCAGGAAGAGAGCAGAGAAAGAACGACTAAGTTTGGCATCTAACATTCAAGGTGATGTTATTGAAAGTCTGCTGCCTATGGTGGACAATTTTGAAAGAGCCAAAACACAGATTAAGATACAAACAGAAGGGGAGGAGAAAATTGATAAAAGTTACCAGGGTATTTATAAACAGTTCGTAGAAATCATGAAAGGATTTAATGTTAATGTGGTCAATACAGTTGGAAAACCATTTGATCCTATGCTACACGAAGCAATTATGCGTGAGGATTCTACATTATTTGAAGAAGGCATAATTATTGAAGAATTCAGGAGAGGATTTATTCTTGGCGACAAGCTTTTGCGCCCTGCTATGGTTAAAGTGTCAGCAGGACCAGGTCCTGCAAAAGCTGCAGAAGATTGTGAAAATGCTGCAGAACATTCTGCTGAATCAGCTGAAGAATGCAAGGAAACAACAAAGGATGCTAATGCATCAGATTCTTCTGATGTCTCAGAAGAGAAAGAGGCATAA___TGCTTTGCTGCTCAAATTTTGTAGGTTTGTCTATTTTCAGGCTAAATTCATTATTCTTATTGCCTTGTGGGCCTCAAAGTTTACACAAAGTCTGTTTGAGTTGCTGAGCCTTCCCTATTGTAAATGGCAGACAGACAACATGGTTGAGGTATCCTATTTTCTCTAATGATAGCAGTTGGTCTGTGGCCACTGGCCATTTGTTGTATTAGATAGAAGCTCCTCTCCATGATTTAATATATGGTTGCAACTTGCATGTTACAATGTGTTAACAGTGAGACAGGTCTTTTATTGCCATTGGTTTTCCAAACCTTGATGACTATTAGTATTTTTCCTTGAGCACCTTTGTTCTTGTCTTCATAATATAGTAGGGTAAAGTTTTCCCCATGGGATTCTTAAATGGGGAAAACTTTATAATTTGAGGCCTTTTTAGGTCAAATAAATCATAACTAGATTCAATTTCGTCATAAGTGTGGTCTGCAGTTGGTTCTCTTATTTTTCATCCTATTATATTTTGATTGT

Fln Alignment:

Contig2705___MASTALAGAAVFVISQSGFKSSRTKLNPCSQFRISVKNSGHFTKRAAMGFVPLNPVNRRCSRFVVYQKVAETESKQVXXXXXXXXXXXXXXXXKAATTEKKPASLVSTLLEAYKEAIANSDDVRVSEIEVQLQAIEDEKIALSKLVATLTEEASTGKEKLLRLNADFDNFRKRAEKERLSLASNIQGDVIESLLPMVDNFERAKTQIKIQTEGEEKIDKSYQGIYKQFVEIMKGFNVNVVNTVGKPFDPMLHEAIMREDSTLXXXXXXXXXXXXXXXLGDKLLRPAMVKVSAGPGPAKAAEDCENXXXXXXXXXXXCKETTKDANASDSSDVSEEKEA
A9NPB5______________MASTALAGVAAFVISQSGLISSQTKLNPCSQFRISVKSSGRFTNRATVGFVPLKPVNRRRSTFVVYQKVAETESKQVEEESDDELEESDTEDSKAATAEQKPASLVPTLLQAYKEAIANSDDTRVSDIEVQLQAIEDEKNALSKLVAALTEEASRGKDKLLRLNADFDNFRKRAEKERLSLASNIQGDVIESLLPMVDDFERAKTQIKIQTEGEEKIDKSYQGIYKQFVEIMKGLHVNVVDTVGKPFDPMLHEAILHEDSTSFEEGIIIEEFRRGFILGDKLLRPAMVKVSAGPGPAKDAEDSANDAEHSANPAEECKETTKDANASDSSDVPEEKEA

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
89			66	33	0.997452
90			66	33	0.997452
91			66	33	0.997452
113		33		66	0.997452
142	33		66		0.997452
203	75		25		0.996473
243			14	85	0.993533
244		85	14		0.993533
245	85		14		0.993533
480	71	28			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain