SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2695

Length: 564 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene2695
CGTCGTGACCTTGGCTGTCACTCAATCTTCTTCGGCATCATCATTTGAGATGCCATATTCACCGGTGCATCTGTCAAGGCCTTCACCGAGAACTCCCCATGTTCCGGGTGCTCACCTGCAGGAACATACAGTTAACATGCACGCTATGAATCCGTCTCCTCCTCAAGGCATGCCACCAATGCGAGGGTGGAACATTGACAACCATGGTTCTGCAAATACCTTGTCATCTTCAGAAGGAAAATTTCCCATTGGAGTGAGTTTCATGAATACACAAACTGAAGATCTAACTGGTCTGCAAGCTGTCACAAAGAGAGATGTGTTCCCTGAACGACCTGGCCAGCCAGAGTGTCAACATTATTTGAGAACAGGAGAGTGTAAATTTGGTGCAGCTTGCAGATATCATCATCCGAAGAGGACTGACCACCCATCCAGTTGCATGCCAGGTCAAATGGGGATTCCCTTGCCATCTGGTCCTGGACGTTCCTTCCCATCTTCAGAAGAGAAAAGATATTACCCTGGAGTTGATTTTAGGAATACTGCTGTACAATGCAATAATTTAGCTGA

Ace file of the UniGene sp_v3.0_unigene2695 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	zinc finger protein 1 (zfn1) [Arabidopsis thaliana]	-	-	4.0e-16	31%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	35%

Source	Gene names
Sma3	OsJ_01160; PHYPADRAFT_29541;

Source	GOs	Term	Type	e value	Identity
Sma3	nucleic acid binding	GO:0003676	Molecular Function	0.0	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, CCCH-type	IPR000571	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LMQ0

Fln msg: Distance to subject end: 113 aas, your sequence is shorter than subject: 187 - 554

Fln protein: VVTLAVTQSSSASSFEMPYSPVHLSRPSPRTPHVPGAHLQEHTVNMHAMNPSPPQGMPPMRGWNIDNHGSANTLSSSEGKFPIGVSFMNTQTEDLTGLQAVTKRDVFPERPGQPECQHYLRTGECKFGAACRYHHPKRTDHPSSCMPGQMGIPLPSGPGRSFPSSEEKRYYPGVDFRNTAVQCNNLA

Protein Length: 188

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCTTCTTCGGCATCATCATTTGAGATGCCATATTCACCGGTGCATCTGTCAAGGCCTTCACCGAGAACTCCCCATGTTCCGGGTGCTCACCTGCAGGAACATACAGTTAACATGCACGCTATGAATCCGTCTCCTCCTCAAGGCATGCCACCAATGCGAGGGTGGAACATTGACAACCATGGTTCTGCAAATACCTTGTCATCTTCAGAAGGAAAATTTCCCATTGGAGTGAGTTTCATGAATACACAAACTGAAGATCTAACTGGTCTGCAAGCTGTCACAAAGAGAGATGTGTTCCCTGAACGACCTGGCCAGCCAGAGTGTCAACATTATTTGAGAACAGGAGAGTGTAAATTTGGTGCAGCTTGCAGATATCATCATCCGAAGAGGACTGACCACCCATCCAGTTGCATGCCAGGTCAAATGGGGATTCCCTTGCCATCTGGTCCTGGACGTTCCTTCCCATCTTCAGAAGAGAAAAGATATTACCCTGGAGTTGATTTTAGGAATACTGCTGTACAATGCAATAATTTAGCTGA

Fln Alignment:

Contig2695___YSPVHLSRPSPRTPHVPGAHLQEHTVNMHAMNPSPPQGMPPMRGWNIDNHGSANTLSSSEGKFPI---GVSFMNTQTEDLT--GLQAV-----------------------TKRDVFPERPGQPECQHYLRTGECKFGAACRYHHP-KRTDHPSSCMPGQMGIPL-PSGP
B8LMQ0______________YSPGLPTWPSPRTPYRQSPHMPGALPYMPVMY-SPHQGMLAASGWGT-YQSPASPLTSPESQQQLRRMNIMYNSTQPNGLSVGGVQGLITPFAQGSSAAVGHQPGHFQPNRTQTETYPERPGQPECQYYIKTGDCKFGFACRYHHPHERVSQSSTCVLSPIGLPLRPTQP

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
440			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain