SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2688

Length: 1937 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene2688

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	D-glycerate 3-kinase [Arabidopsis thaliana] gb\|AEE36395.1\| D-glycerate 3-kinase [Arabidopsis thaliana]	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Sma3	Putative uncharacterized protein	-	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G80380.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein chr1:30217332-30219784 FORWARD LENGTH=456	63%
RefSeq	Arabidopsis thaliana	NP_001077855.1	D-glycerate 3-kinase [Arabidopsis thaliana]	63%
RefSeq	Populus trichocarpa	XP_002304169.1	predicted protein [Populus trichocarpa]	59%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LL83

Fln msg:

Fln protein: MWRSVYTAQCYLIISDDYCIFRSPYHFFGNGFKMIQLLRLGNPSALNLNPKADNRGIPPFKFVRNVADNKFVNRGFTTASSSSRVVEFGSDRKRRLMSGQMLAMALPSKTASSAMVSSVADLYEFICRGPLLEKMGSNLQEVADTIDRWLECGIQLCRLLGFDELLLTEAQKVRVYHYYVPVYLWCERELLQHRAKFKDDADEIPPLVFGISAPQGSGKTTLVYALDYLFNVAGRKAASISIDDFYLTAADQANLSGEYAGNTLLELRGNAGSHDLAFGTDTLKNLCSLTKEGAKAKIPRYDKSAYNGRGDRADPSTWPEIEGPLEVILLEGWMLGFKPLSSEVVKAVDPQLEAVNRNLESYYDAWEMFIGSWIIIKVDDTQWVYEWRLQAEIAMREDGKPGMSDEEVADFVSRYMPAYKAYLPVLYSDGPRGSKPEHTLVVEVDENRNPLG*

Protein Length: 454

Fln nts: TAACTTTTCAACTTGATGGCACACTGCTGTAAGATAGGTGGTACAATAGAATCCAAAACTACTGTAAGATAGGTGGTACAATAGAATCCAAAACTGGCCCAAGTTCAGAGTTTGGACGGGGATGGGAGTTACCTCTGAGAGGATAAGTGGACATGAAGACAAAGAAAGGGAAAT_-_ATGTGGCGTTCAGTCTATACTGCGCAATGTTATCTTATCATTTCAGACGATTACTGTATATTTCGCTCTCCATATCATTTTTTTGGTAATGGTTTTAAGATGATCCAGTTACTGCGATTGGGCAACCCAAGTGCCCTTAATTTGAACCCCAAGGCCGACAATCGGGGTATCCCGCCCTTCAAATTCGTCCGAAATGTAGCGGACAACAAATTCGTGAACCGCGGGTTCACTACCGCGAGTTCGAGTTCAAGGGTGGTGGAATTTGGATCTGATAGGAAGCGCCGGCTAATGTCGGGGCAAATGTTAGCGATGGCATTACCGTCAAAGACTGCATCCTCTGCAATGGTATCCTCGGTGGCTGACCTTTATGAATTCATATGCAGAGGCCCCCTGCTGGAAAAGATGGGGTCGAATCTCCAGGAGGTCGCTGATACTATTGACCGGTGGCTTGAGTGCGGGATCCAGCTCTGCCGCCTTCTCGGGTTTGATGAGCTTCTTCTGACAGAGGCGCAGAAGGTTAGGGTTTATCATTATTATGTACCAGTCTATTTATGGTGCGAGCGTGAGCTGTTGCAGCACAGGGCCAAGTTCAAAGATGATGCAGATGAAATTCCTCCCCTTGTGTTTGGCATCAGTGCACCTCAGGGTAGTGGCAAGACAACTCTAGTGTATGCACTTGATTATCTCTTCAACGTAGCAGGCAGAAAGGCTGCCTCGATATCCATTGATGACTTCTATTTAACAGCAGCTGATCAGGCAAATCTCTCTGGTGAATATGCAGGAAATACCCTATTGGAGTTACGGGGTAACGCTGGAAGCCATGATTTAGCATTTGGAACAGATACTTTAAAGAATCTGTGTAGCTTGACAAAAGAAGGTGCAAAGGCCAAGATACCACGGTATGATAAGTCAGCTTACAACGGGCGTGGGGACAGGGCAGATCCTTCTACATGGCCTGAAATTGAAGGGCCATTGGAGGTGATTTTGCTTGAAGGATGGATGCTTGGTTTTAAGCCACTATCAAGTGAAGTTGTGAAAGCTGTTGATCCACAGTTGGAAGCTGTAAACAGAAATCTTGAATCTTATTACGATGCATGGGAAATGTTTATTGGTTCGTGGATAATCATCAAAGTTGATGATACACAGTGGGTATATGAGTGGCGTTTGCAGGCTGAGATTGCAATGAGGGAAGATGGCAAGCCTGGAATGTCGGATGAAGAGGTTGCCGACTTTGTCTCAAGATATATGCCAGCATATAAAGCATATCTGCCTGTTCTGTACTCTGATGGACCAAGGGGTTCAAAGCCTGAACATACTCTTGTTGTTGAAGTTGATGAAAATCGAAATCCACTTGGTTGA___TACTTGTTCTGAACTCAAAGATGAAGAAGCATCATTGGGACTTAATTGTGCGCCATCCTTCTGCCAACAACTGACACAAAAATGGTACCGAGGGTTAATTTATCTCGGATTGTCTCAAGTTTTACCAGTCCAGTGTGTTGGTGTACAAAATATTTGTACTTTATATTAGAAAATAACTGGAAGCATTGATTTCGATTTTTTCTGCAGACAAAAATGATAGCGTTCACATAAACATCTAAAGTTCTGTCATGCTAGATATTCAGAAGAACACTCTATTTATCTCGGACATAGAATTGGAGTTGGGGAAGTGATAACAAGGATGGAAAAAATTGTGTTTTGGCTATCCCAGATGTTCAGTTCTGTAGTTCATGCATAAAAGTAGTTCATGCATAAAAGTGTTTCGA

Fln Alignment:

Contig2688___MIQLLRLGNPSALNLNPKADNRGIPPFKFVRNVA----DNKFVNRGFTTASSSSRVVEFGSDRKRRLMSGQMLAMALPSKTASSAMVSSVADLYEFICRGPLLEKMGSNLQEVADTIDRWLECGIQLCRLLGFDELLLTEAQKVRVYHYYVPVYLWCERELLQHRAKFKDDADEIPPLVFGISAPQGSGKTTLVYALDYLFNVAGRKAASISIDDFYLTAADQANLSGEYAGNTLLELRGNAGSHDLAFGTDTLKNLCSLTKEGAKAKIPRYDKSAYNGRGDRADPSTWPEIEGPLEVILLEGWMLGFKPLSSEVVKAVDPQLEAVNRNLESYYDAWEMFIGSWIIIKVDDTQWVYEWRLQAEIAMREDGKPGMSDEEVADFVSRYMPAYKAYLPVLYSDGPRGSKPEHTLVVEVDENRNPLG
B8LL83______________MIQLLRLGTPSALNLNPKASNRSIQPFKFYRNVAVNGADNTFVDRGSNTAGSSSRVAEFGFGRKRWMMSGKMLAMALPSNAASSAMVSSVADLYEFICRGPLLEKTGSSVQEVANTIDQWLECGIQLCRLLGFNELLLTEAQKVRVYHYYVPVYLWCERELLQHRAKFKDDAEEIPPFVFGVSAPQGSGKTTLVYALDHLFNITGRKAASISIDDFYLTATDQAKLAGENAGNTLLELRGNAGSHDLAFGADTLKKLCSLTKTGTKAKIPRYDKSAYSGRGDRGDPFTWPEIEGPLDVILLEGWMLGFKPLSSEVVKAVDPQLEAVNRNLEAYYDAWEKFIGSWIIIKVDDTHWVYEWRLQAEIAMRKEGKPGMSDEQVADFVSRYMPAYKAYLPVLYSDGPRGSNPEHTLIVEVDEHRNPLG

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
804		80		20	0.995493
1176	10		90		0.90298
1546	76		23		1.0
1604	27	63	9		1.0
1737	16		83		0.994512
1824			85	14	0.999981

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain