SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2684

Length: 2137 nt

UniGene Fasta

>sp_v3.0_unigene2684
AGCCTGTACGCCACCAACTACGTCCAAGGTCTCCAAGAAACCGAAGGTGGTGACCCTAACCAGTTGAAGGTGGCGGCCTGCTGCAAACATTACACGGCCTATGACGTGGACAACTGGCATGGGGTCGAGCGTTACACGTTCAATGCCATCGTGACGCAACAAGATCTGAAGGACACATACGACCCGCCATTTAAGAGCTGTGTGCTGGATGGCAACGTGGCCAGCGTGATGTGCTCCTACAATCAGGTCAACGGCGTCCCCACCTGCGCCGATAGGAATCTGCTCGCAGGCACCATCAGAGGCGCTTGGAACTTGAATGGCTACATTGTCTCAGACTGTGACTCCGTTTCTGTATTCAACAACCAACAGCACTATGGGGCAACTCCTCAAGACGCAGCTGCCGATGCTATAAATGCAGGTCTGGATCTCAACTGCGGGACATTCCTAGCTCAGTACACACAATCAGCTGTGCAACAAGGCAAACTGAAGGAGACTTCCATTGATATAGCTCTGCATAATATCTTCACGGTGCTGATGCGCCTCGGCTGGTTCAACGGCAACCCGGCTCAGCAGCCATATGGGAATCTTGGACCTAATGATGTGTGCACTGATGCTAATCAGCAGTTGGCTCTCGAGGCTGCGAGGGAAGGGATAGTGCTGCTAAAGAATGATGGTAAATTGCCATTAGCAACAAACCTGGTCCACTCCTTGGCTGTCATTGGCCCCAATGCGAATGTCACTGCAACAATGATCGGAAACTATGCCGGCATCCCATGTAGGTACACAACGCCCCTTCAAGGCCTTTCAGCTTACACTCAAACTGTCTACGCACCTGGCTGTGCAAACGTTGCATGCACGGGAAACGAGTCAATACCTCAGGCAGTCCAGACAGCCAGCAATGCAGATGCAACAGTGGTAATAGTTGGTGGAGACTTGTCATTGGAAGCAGAGGCTCTAGACAGAACAAGTTTGCTGTTACCAGGACTGCAACAGCAGCTCGTAGACCTAGTTACCGACGCAGCCAAGGGACCTGTAGTTCTTGTGATTATGTCAGGGGGTCCATTTGACATAACATTCGCAAAGAATGTTAACAAGATCTCAGGGATTCTTTGGGTGGGTTATCCGGGACAAGCTGGAGGAGCAGCCATTGCAGATGTAATATTTGGAAAATACAATCCAGGTGGCAGACTGCCTGTGACTTGGTACCCAGAAGAGTTCGCTGCCAAAGTCCCCCTGACTGACATGAACATGAGACCAGATCCTGCCCGAGGTTACCCTGGCCGGACTTACAGATTTTATACAGGAAAAACTGTGTACAATTTCGGTGATGGACTGAGCTATACAAAATTCGAGCACACTCTAGTTAATGCACCCAAGGTCATCTCTCTTCCCACCCGTGGACGCAGAACATGTTGTCGGACAAAATCAAAACCTTGTGTGGCTGTCAGAGTCACCCACATTAAATGTAAGCACTTGTCCCTGAAACTTGCTGTTGATGTAAAGAATGCTGGTTCTCGAGATGGAAGCCAAGTATTGTTTTTATTCTCTACACCACCATCCAGTAATGGACTCAATCCCCCAACGAAGCAACTGATTGGATTCAGAAAGATTCATGTCCAAGCAGGAGCCACAAAAAGAGTCCATTTCAGAAATAATGTTTGCAAGGACCTCAGCGTTGTTGACAAGACTGGAACCAGAAAGGTGCCACTAGGTTCTCATCAACTTCACATTGGTGATCTGCAACAGGATGTTTCTCTTCAGATAACCTGCTGATTCACATGAAGGGAGGGGAAATATGGTTCTCATAATGTTTCTCAGCCAAGTGAGGAACATATTATTGATCATTTTTCATGTTTTTTAACAATTAATGGCAGTAGCTATGTTGCTATTCATGATTACTATTTTGTTTCTCCAGCTGAAATTGCCATGGGTCAGATTTATGATAGTTAACATCATTGCCTTCACAGTAAATCTTCACCCAGAGATTCACCAGTCAGATCAGGGGTGTTGATCACTACATTGTTTTAGAATCTTCATCAGTCAGAAGAAGGGTGTTTGATCACTACTTGGAATTGGTTTAGATTCTGTATGATGACTGGTTTTATTAATGAATAAGCAAAACTTAACTCGATATATA

Ace file of the UniGene sp_v3.0_unigene2684

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	beta-D-xylosidase 4 [Arabidopsis thaliana] sp\|Q9FLG1.1\|BXL4_ARATH RecName: Full=Beta-D-xylosidase 4; Short=AtBXL4; Flags: Precursor dbj\|BAB11424.1\| beta-xylosidase [Arabidopsis thaliana] gb\|AED97922.1\| beta-D-xylosidase 4 [Arabidopsis thaliana]	-	-	0.0	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%
Sma3	Beta-xylosidase	-	-	1.336e-13	-

Source	ECs	Term	Type	e value	Identity
Sma3	Beta-glucosidase.	EC:3.2.1.21	-	8.102e-19	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Cyanoamino acid metabolism	00460		8.102e-19	%
Sma3	Starch and sucrose metabolism	00500		8.102e-19	%
Sma3	Phenylpropanoid biosynthesis	00940		8.102e-19	%
Sma3	Biosynthesis of secondary metabolites	01110		8.102e-19	%
Sma3	Xylan 1,4-beta-xylosidase.	EC:3.2.1.37	-	8.914e-15	-

Source	KEGGs	Term	e value	Identity
Sma3	Starch and sucrose metabolism	00500	8.914e-15	%
Sma3	Amino sugar and nucleotide sugar metabolism	00520	8.914e-15	%
Sma3	Metabolic pathways	01100	8.914e-15	%

Source	Gene names
Sma3	ARF; At1g02640; At1g78060; At5g09700; At5g09730; At5g10560; At5g10560/F12B17_90; At5g49360; At5g64570; B0414F07.1; B1011H02.4; BXL2; BXL3; BXL4; BXL7; F12B17_90; F17I14_110; F17I14_80; GSVIVT00001462001; GSVIVT00003420001; GSVIVT00008402001; GSVIVT0000853

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	beta-glucosidase activity	GO:0008422	Molecular Function	-
Sma3	xylan 1,4-beta-xylosidase activity	GO:0009044	Molecular Function	-
Sma3	alpha-N-arabinofuranosidase activity	GO:0046556	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	xylan catabolic process	GO:0045493	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3		IPR000173	-	-
Sma3	Glycoside hydrolase, family 3, N-terminal	IPR001764	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Glycoside hydrolase family 3 C-terminal domain	IPR002772	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G64570.1	XYL4, ATBXL4 beta-D-xylosidase 4 chr5:25810227-25813309 REVERSE LENGTH=784	61%
RefSeq	Arabidopsis thaliana	NP_201262.1	beta-D-xylosidase 4 [Arabidopsis thaliana]	61%
RefSeq	Populus trichocarpa	XP_002298197.1	predicted protein, partial [Populus trichocarpa]	59%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABI5

Fln msg: your sequence is longer than subject: 515 - 304

Fln protein: MCSYNQVNGVPTCADRNLLAGTIRGAWNLNGYIVSDCDSVSVFNNQQHYGATPQDAAADAINAGLDLNCGTFLAQYTQSAVQQGKLKETSIDIALHNIFTVLMRLGWFNGNPAQQPYGNLGPNDVCTDANQQLALEAAREGIVLLKNDGKLPLATNLVHSLAVIGPNANVTATMIGNYAGIPCRYTTPLQGLSAYTQTVYAPGCANVACTGNESIPQAVQTASNADATVVIVGGDLSLEAEALDRTSLLLPGLQQQLVDLVTDAAKGPVVLVIMSGGPFDITFAKNVNKISGILWVGYPGQAGGAAIADVIFGKYNPGGRLPVTWYPEEFAAKVPLTDMNMRPDPARGYPGRTYRFYTGKTVYNFGDGLSYTKFEHTLVNAPKVISLPTRGRRTCCRTKSKPCVAVRVTHIKCKHLSLKLAVDVKNAGSRDGSQVLFLFSTPPSSNGLNPPTKQLIGFRKIHVQAGATKRVHFRNNVCKDLSVVDKTGTRKVPLGSHQLHIGDLQQDVSLQITC*

Protein Length: 516

Fln nts: AGCCTGTACGCCACCAACTACGTCCAAGGTCTCCAAGAAACCGAAGGTGGTGACCCTAACCAGTTGAAGGTGGCGGCCTGCTGCAAACATTACACGGCCTATGACGTGGACAACTGGCATGGGGTCGAGCGTTACACGTTCAATGCCATCGTGACGCAACAAGATCTGAAGGACACATACGACCCGCCATTTAAGAGCTGTGTGCTGGATGGCAACGTGGCCAGCGTG_-_ATGTGCTCCTACAATCAGGTCAACGGCGTCCCCACCTGCGCCGATAGGAATCTGCTCGCAGGCACCATCAGAGGCGCTTGGAACTTGAATGGCTACATTGTCTCAGACTGTGACTCCGTTTCTGTATTCAACAACCAACAGCACTATGGGGCAACTCCTCAAGACGCAGCTGCCGATGCTATAAATGCAGGTCTGGATCTCAACTGCGGGACATTCCTAGCTCAGTACACACAATCAGCTGTGCAACAAGGCAAACTGAAGGAGACTTCCATTGATATAGCTCTGCATAATATCTTCACGGTGCTGATGCGCCTCGGCTGGTTCAACGGCAACCCGGCTCAGCAGCCATATGGGAATCTTGGACCTAATGATGTGTGCACTGATGCTAATCAGCAGTTGGCTCTCGAGGCTGCGAGGGAAGGGATAGTGCTGCTAAAGAATGATGGTAAATTGCCATTAGCAACAAACCTGGTCCACTCCTTGGCTGTCATTGGCCCCAATGCGAATGTCACTGCAACAATGATCGGAAACTATGCCGGCATCCCATGTAGGTACACAACGCCCCTTCAAGGCCTTTCAGCTTACACTCAAACTGTCTACGCACCTGGCTGTGCAAACGTTGCATGCACGGGAAACGAGTCAATACCTCAGGCAGTCCAGACAGCCAGCAATGCAGATGCAACAGTGGTAATAGTTGGTGGAGACTTGTCATTGGAAGCAGAGGCTCTAGACAGAACAAGTTTGCTGTTACCAGGACTGCAACAGCAGCTCGTAGACCTAGTTACCGACGCAGCCAAGGGACCTGTAGTTCTTGTGATTATGTCAGGGGGTCCATTTGACATAACATTCGCAAAGAATGTTAACAAGATCTCAGGGATTCTTTGGGTGGGTTATCCGGGACAAGCTGGAGGAGCAGCCATTGCAGATGTAATATTTGGAAAATACAATCCAGGTGGCAGACTGCCTGTGACTTGGTACCCAGAAGAGTTCGCTGCCAAAGTCCCCCTGACTGACATGAACATGAGACCAGATCCTGCCCGAGGTTACCCTGGCCGGACTTACAGATTTTATACAGGAAAAACTGTGTACAATTTCGGTGATGGACTGAGCTATACAAAATTCGAGCACACTCTAGTTAATGCACCCAAGGTCATCTCTCTTCCCACCCGTGGACGCAGAACATGTTGTCGGACAAAATCAAAACCTTGTGTGGCTGTCAGAGTCACCCACATTAAATGTAAGCACTTGTCCCTGAAACTTGCTGTTGATGTAAAGAATGCTGGTTCTCGAGATGGAAGCCAAGTATTGTTTTTATTCTCTACACCACCATCCAGTAATGGACTCAATCCCCCAACGAAGCAACTGATTGGATTCAGAAAGATTCATGTCCAAGCAGGAGCCACAAAAAGAGTCCATTTCAGAAATAATGTTTGCAAGGACCTCAGCGTTGTTGACAAGACTGGAACCAGAAAGGTGCCACTAGGTTCTCATCAACTTCACATTGGTGATCTGCAACAGGATGTTTCTCTTCAGATAACCTGCTGA___TTCACATGAAGGGAGGGGAAATATGGTTCTCATAATGTTTCTCAGCCAAGTGAGGAACATATTATTGATCATTTTTCATGTTTTTTAACAATTAATGGCAGTAGCTATGTTGCTATTCATGATTACTATTTTGTTTCTCCAGCTGAAATTGCCATGGGTCAGATTTATGATAGTTAACATCATTGCCTTCACAGTAAATCTTCACCCAGAGATTCACCAGTCAGATCAGGGGTGTTGATCACTACATTGTTTTAGAATCTTCATCAGTCAGAAGAAGGGTGTTTGATCACTACTTGGAATTGGTTTAGATTCTGTATGATGACTGGTTTTATTAATGAATAAGCAAAACTTAACTCGATATATA

Fln Alignment:

Contig2684___QAVQTASNADATVVIVGGDLSLEAEALDRTSLLLPGLQQQLVDLVTDAAKGPVVLVIMSGGPFDITFAKNVNKISGILWVGYPGQAGGAAIADVIFGKYNPGGRLPVTWYPEEFAAKVPLTDMNMRPDPARGYPGRTYRFYTGKTVYNFGDGLSYTKFEHTL--VNAPKVISLPTRGRRTCCRTKSKPCVAVRVTHIKCKHLSLKLAVDVKNAGSRDGSQVLFLFSTPPSSNGLNPPTKQLIGFRKIHVQAGATKRVHFRNNVCKDLSVVDKTGTRKVPLGSHQLHIGDLQQDVSL
D5ABI5______________EAVETAKKVDEVIVVVGLDQTQEKEERDRIKLTLPGQQENLVYQVSRAAKRPVVFVILSGGPVDVSFAVNDPQISSIIWAGYPGQAGGQALAEIIFGDYNPGGRLPMTWYPQDF-VKIPMTDMNMRPNHDTGYPGRTYRFYTGKKVFEFGQGLSYSAYSYNFSSTTIQKIDLNVTMEHFEALGNRGKG--HVRVENTPCRKLKFRSSIFVRNHDKMDGRHAVLLYSKSPATH-KGAPQKQLIGFRSVHVQGKHTAKVTFVVKPCDHFSTVEENGQRLLAIGSHSLIVGDTQYPVSL

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
1444		20		80	0.995493
1450	80			20	0.995493
1452	20			80	0.995493
1454	80	20			0.995493
1455		80		20	0.995493
1456		80		20	0.995493
1457		80	20		0.995493
1458	80		20		0.995493
1460	80			20	0.995493
1461			20	80	0.995493
1463	80	20			0.995493
1465	80	20			0.995493
1468		20		80	0.995493
1537		16	83		0.994512
1538	16			83	0.994512
1539		16		83	0.994512
1541		16		83	0.994512
1542	16			83	0.994512
1621	85	14			0.993533
1624	83		16		0.994512
1625			83	16	0.994512
1631	83			16	0.994512
1632		83		16	0.994512
1633	83		16		0.994512
1634	83		16		0.994512
1635	83	16			0.994512
1636	83			16	0.994512
1637	50		16		1.0
1638	33			16	1.0
1639		16	83		0.994512
1641		16	83		0.994512
1644	16	83			0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain