SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2677

Length: 2031 nt

UniGene Fasta

>sp_v3.0_unigene2677
GATTGATGGAATCCAGCAACAACCACAGTATGGGTATATTATTCGTAAACTTATACGTACACCTCGTGAACTAAGCTGAAAAACAACTTTACATTTTCAGCCAGCAAAAATATATAAATCGTTACAGAATAGCCCAGCAATATTCGAGGAGGGCATGCATGAAGAAGGCATTGCTCTGCTCGAACACATAGTAGTCTGATCTCTGCGCTTCGAGCACTACGAGAATTGCTTCACCATTACCTTCATCATCCACCAATGGCGGCCGAAGATTTTAATGACAAGAATGCTGTATTCAGAAAGCTCCGGGCCAAGCCCGACAACAAGATGTGTTTTGACTGTAATACAAGGAATCCCACATGGGCATCGGTCACTTACGGGGTTTTCATCTGCCTGGATTGTTCTGCATCTCATCGTAGTCTTGGCGTTCACATTAGCTTTGTCAGATCTGTAAACCTGGACTCATGGACTCCTGAACAGTTGAAGGTCATGAGCTTTGGTGGCAATGGCCGAGGACATACATTCTTCAAGCAGCATGGTTGGAATGATGGAGGTAAAATAGAATCGAAATACACATCAAGAGCAGCTGAGCTATATAGACAGCTTCTTGCAAAGGAAGTTGCTAGAAGCTTGACAAATGGAACAAGTCAGACACCATCCTCATTGCATGATGCTTCACAATCAAACCATGTGACTAATGGAGACTCTAATGGAAAGAGTTCAAATTTAGCAACTGATTTTTTCTTCAACGATGAAATTGATGCACCTCAAGTAGTTCCTTCTAAAGCTGAAGTAGGTCTTCCACCTCCAGCTATTGCAAGTACAGTTAAAAAACCACTGGTAGCTAAGAGAATTGTTGGAAATAAAACTGGTGGGCTTGGTGTCAAAAAGCTTACAACTAAGCCAAAGGAGGATCTTTATGATCAAAAGCCAGAAGAACCTGCATCTATTAGCATTCCTTCAAGTGCATCTACAGCAGTACAGGATGCCTCTCGCCCTTCTCGGTTCACATACATGGAGAATAACTCCAATTCAAACTCAAATGGTGGAGCACACATCTCTGGTCATGTTCCTCCTCCTGCAGCTGCCAATTTTTTCGATGATTTTGGATTAAGTGCGGGAAATCAAAAGAAAAAGAGCTCAAGCCGCTCTCCACAGGTTGAGGAAAGTAATGAGGCAAGGCAGAAATTTGCAAATGCCAAGTCAATATCATCTTCGCAATTCTTTGGCGAGAACAAGAATGCAGTCGATACAGAAACTCATGTCCGCTTGCAGAAGTTTTCTGGGTCGTCGGGCATATCAAGCAACGAGCTTTTTGGACATGATGAGTATGATTCTCCTCTGGACATGACAGCAAGTGAACTTATTACAAGGATTTCATTGCAGGCATCTCAGGACTTATCAACCCTAAAGAACATAGCTGGTGAGACTGGGAAGAAGCTATCTTCATTTGCTTCGAGCTTTATTGCAGATTTTTAGGGTAGCATCGTATGATCAACATATTTCGAGATTTCTGGGTGTGACCATGAATGCAAGTTTGTGATAAGTAGTCAGTCTTGGGCTATGCTATTTTCATTCTTTGTTTTATTTGTTGTACTGGTTGGCCGGGAGATTCTTAAGTTGGCATCTAGAAATTTTCAAAATGTTGGTTTATTTATTCATTCTTTTGCACTTTCAACTTGCTGCTTTGGATAGCGTCAACGGTGCTGTAAGGCCTCGTTTTATGTAGAAGTAGTTACATTATCGTGCAATATATGTTTTTCACTGTTCAGTTGCGATTCTAATTGGTGGCTATTTTTGCAACAACATACCGTGGTTTTCTCAAGGATAAAGTTTATACAGTAGCAGAATTTGCAGAATTGGTTAACATTATATCTCATTTCTAAATAGTACCATGATAATTGCGGCATATGTATTATCAGCAATGCGTAGTGTATTCCATTGATATTGAGGATACTTGTTTATCTTTCTTGTACTATAGACATGAATAGGGATTGGAAAATGTCTTGTCAATTTCCAGTTAGTATTGGTAGG

Ace file of the UniGene sp_v3.0_unigene2677

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Arf gtpase-activating protein, putative n=1 Tax=Ricinus communis RepID=B9SNV8_RICCO	-	-	0.0	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Sma3	Rev interacting-like family protein, putative, expressed	-	-	1.687e-08	-

Source	Gene names
Sma3	AGD10; AGD7; AGD8; AGD9; ASP1; At2g35210; At2g37550; At4g17890; At5g46750; B1147A04.36; CHLREDRAFT_115159; CHLREDRAFT_149716; CHLREDRAFT_159651; F13M22.5; GSVIVT00015761001; GSVIVT00018081001; GSVIVT00021286001; LOC_Os03g17020; LOC_Os03g63710; LOC_Os10g42

Source	GOs	Term	Type	Identity
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	ARF GTPase activator activity	GO:0008060	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	embryo development ending in seed dormancy	GO:0009793	Biological Process	-
Sma3	vesicle-mediated transport	GO:0016192	Biological Process	-
Sma3	regulation of ARF GTPase activity	GO:0032312	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	C2 calcium-dependent membrane targeting	IPR000008	-	-
Sma3	Arf GTPase activating protein	IPR001164	-	-
Sma3	Tetrahaem cytochrome domain	IPR012286	-	-
Sma3	C2 membrane targeting protein	IPR018029	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G17890.1	AGD8 ARF-GAP domain 8 chr4:9937121-9939146 FORWARD LENGTH=413	53%
RefSeq	Arabidopsis thaliana	NP_567543.1	putative ADP-ribosylation factor GTPase-activating protein AGD8 [Arabidopsis thaliana]	53%
RefSeq	Populus trichocarpa	XP_002329561.1	predicted protein [Populus trichocarpa]	56%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9S4

Fln msg:

Fln protein: MAAEDFNDKNAVFRKLRAKPDNKMCFDCNTRNPTWASVTYGVFICLDCSASHRSLGVHISFVRSVNLDSWTPEQLKVMSFGGNGRGHTFFKQHGWNDGGKIESKYTSRAAELYRQLLAKEVARSLTNGTSQTPSSLHDASQSNHVTNGDSNGKSSNLATDFFFNDEIDAPQVVPSKAEVGLPPPAIASTVKKPLVAKRIVGNKTGGLGVKKLTTKPKEDLYDQKPEEPASISIPSSASTAVQDASRPSRFTYMENNSNSNSNGGAHISGHVPPPAAANFFDDFGLSAGNQKKKSSSRSPQVEESNEARQKFANAKSISSSQFFGENKNAVDTETHVRLQKFSGSSGISSNELFGHDEYDSPLDMTASELITRISLQASQDLSTLKNIAGETGKKLSSFASSFIADF*

Protein Length: 408

Fln nts: GATTGATGGAATCCAGCAACAACCACAGTATGGGTATATTATTCGTAAACTTATACGTACACCTCGTGAACTAAGCTGAAAAACAACTTTACATTTTCAGCCAGCAAAAATATATAAATCGTTACAGAATAGCCCAGCAATATTCGAGGAGGGCATGCATGAAGAAGGCATTGCTCTGCTCGAACACATAGTAGTCTGATCTCTGCGCTTCGAGCACTACGAGAATTGCTTCACCATTACCTTCATCATCCACCA_-_ATGGCGGCCGAAGATTTTAATGACAAGAATGCTGTATTCAGAAAGCTCCGGGCCAAGCCCGACAACAAGATGTGTTTTGACTGTAATACAAGGAATCCCACATGGGCATCGGTCACTTACGGGGTTTTCATCTGCCTGGATTGTTCTGCATCTCATCGTAGTCTTGGCGTTCACATTAGCTTTGTCAGATCTGTAAACCTGGACTCATGGACTCCTGAACAGTTGAAGGTCATGAGCTTTGGTGGCAATGGCCGAGGACATACATTCTTCAAGCAGCATGGTTGGAATGATGGAGGTAAAATAGAATCGAAATACACATCAAGAGCAGCTGAGCTATATAGACAGCTTCTTGCAAAGGAAGTTGCTAGAAGCTTGACAAATGGAACAAGTCAGACACCATCCTCATTGCATGATGCTTCACAATCAAACCATGTGACTAATGGAGACTCTAATGGAAAGAGTTCAAATTTAGCAACTGATTTTTTCTTCAACGATGAAATTGATGCACCTCAAGTAGTTCCTTCTAAAGCTGAAGTAGGTCTTCCACCTCCAGCTATTGCAAGTACAGTTAAAAAACCACTGGTAGCTAAGAGAATTGTTGGAAATAAAACTGGTGGGCTTGGTGTCAAAAAGCTTACAACTAAGCCAAAGGAGGATCTTTATGATCAAAAGCCAGAAGAACCTGCATCTATTAGCATTCCTTCAAGTGCATCTACAGCAGTACAGGATGCCTCTCGCCCTTCTCGGTTCACATACATGGAGAATAACTCCAATTCAAACTCAAATGGTGGAGCACACATCTCTGGTCATGTTCCTCCTCCTGCAGCTGCCAATTTTTTCGATGATTTTGGATTAAGTGCGGGAAATCAAAAGAAAAAGAGCTCAAGCCGCTCTCCACAGGTTGAGGAAAGTAATGAGGCAAGGCAGAAATTTGCAAATGCCAAGTCAATATCATCTTCGCAATTCTTTGGCGAGAACAAGAATGCAGTCGATACAGAAACTCATGTCCGCTTGCAGAAGTTTTCTGGGTCGTCGGGCATATCAAGCAACGAGCTTTTTGGACATGATGAGTATGATTCTCCTCTGGACATGACAGCAAGTGAACTTATTACAAGGATTTCATTGCAGGCATCTCAGGACTTATCAACCCTAAAGAACATAGCTGGTGAGACTGGGAAGAAGCTATCTTCATTTGCTTCGAGCTTTATTGCAGATTTTTAG___GGTAGCATCGTATGATCAACATATTTCGAGATTTCTGGGTGTGACCATGAATGCAAGTTTGTGATAAGTAGTCAGTCTTGGGCTATGCTATTTTCATTCTTTGTTTTATTTGTTGTACTGGTTGGCCGGGAGATTCTTAAGTTGGCATCTAGAAATTTTCAAAATGTTGGTTTATTTATTCATTCTTTTGCACTTTCAACTTGCTGCTTTGGATAGCGTCAACGGTGCTGTAAGGCCTCGTTTTATGTAGAAGTAGTTACATTATCGTGCAATATATGTTTTTCACTGTTCAGTTGCGATTCTAATTGGTGGCTATTTTTGCAACAACATACCGTGGTTTTCTCAAGGATAAAGTTTATACAGTAGCAGAATTTGCAGAATTGGTTAACATTATATCTCATTTCTAAATAGTACCATGATAATTGCGGCATATGTATTATCAGCAATGCGTAGTGTATTCCATTGATATTGAGGATACTTGTTTATCTTTCTTGTACTATAGACATGAATAGGGATTGGAAAATGTCTTGTCAATTTCCAGTTAGTATTGGTAGG

Fln Alignment:

Contig2677___MAAEDFNDKNAVFRKLRAKPDNKMCFDCNTRNPTWASVTYGVFICLDCSASHRSLGVHISFVRSVNLDSWTPEQLKVMSFGGNGRGHTFFKQHGWNDGGKIESKYTSRAAELYRQLLAKEVARSLTNGTSQTPSSLHDASQSNHVTNGDSNGKSSNLATDFFFNDEIDAPQVVPSKAEVGLPPPAIASTVKKPLVAKRIVGNKTGGLGVKKLTTKPKEDLYDQKXXXXXXXXXXXXXXTAVQDASRPSRFTYMEXXXXXXXXGGAHISGHVPPPAAANFFDDFGLSAGNQKKKSSSRSPQVEESNEARQKFANAKSISSSQFFGENKNAVDTETHVRLQKFSGSSGISSNELFGHDEYDSPLDMTASELITRISLQASQDLSTLKNIAGETGKKL
D5A9S4______________MAAEDFSDKNAVFRKLRAKPENKMCFDCSTRNPTWASVTYGIFICLDCSASHRSLGVHISFVRSVNLDSWTPEQLKVMSFGGNGRGHTFFKQHGWNDEGKIESKYTSRAAELYRQLLAKEVARSLTNGTSQTPSSLPDASQTNHVTNGDSNGKSSNLGTDFFFNDEIDAPQAVSSKAQVGLPPPAIASTGKKPLVSKRIVGNKTGGLGVKKLTTKPKENLYDQKPEEPASTSIPSSASTAIHDASRPSRFTYMENNSNADSNGGAHISGHVPPPAAANFFDDFGLSAGNQKKKNSSRSPQIEESNEARQKFANAKSISSSQFFGEHKNALDTETHVRLQKFSGSSGISSNELFGHDEYDSPLDLTASELITRISLQASQDLSTLKNIAGETGKKL

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
587	83		16		0.994512
1095		75		25	0.996473
1270		95	4		0.995482
1272			95	4	0.995482
1570			0	96	0.996891
1581		2		97	0.924243
1583	1			95	0.999223
1633	4			95	0.999986
1766	2	8		89	0.999999
1778	18	81			1.0
1817	9			80	0.999537
1869	88		11		0.923564
1889	85			14	0.993533
1910			57	42	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain