SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2671

Length: 3449 nt

UniGene Fasta

>sp_v3.0_unigene2671
AGATTAAGAAAGGGTTCGATAACCAGTTCTCGCTTTGTGCTATTGGCGCCAAGTGGGACCAACACAATCAGAATACATCCATCAAGTAACAAGTAGCAAAAGCGGGCTACCCTTTCTTCAGCATTCAATTCCATCCAAGTAGAGATTTAATTTGCTCGAGGAAGGTAGACGAAAAAAATTTGCAATTCTTGGCTTCAGTGGCCTAGGGTTTGAAGAATTCGCAGGCTTCATTGGCTACATGTTGATAAAATTATTCGGATCAAAGTACATAGAGAAGAACAGATTTTATTAACGGTATTGTGTGGGACATTTAAAGGCGCTCAACGCGGTCCAGTAAACCATGTCCCTTCCAGAGGTCATAGACCTTAGCAGTGATGAAGATGATTGCATGGATGATACGGCGGCTGATGTCTGTGGGCATGAGACTTCATTTCCAGGTTCAGATAATGGTAAAAGGAAAGATTATTGTGTGACTGAGACTGTAAAACAGGAATTATTTGAACAGCCTAGCAATGCATTGGATTCTGCAGATGGAAGCACTTTTATTATGCCAACAAAAAAACAGACTGGAGTATGCCGACAATTTTGGAAAGCTGGGGATTATGACGTGCGATCATCTTCAAAGAGAACCTCCCAAAATGGCATGGATCATGTTCGTGTTCATCCTAAATTTCTTCATTCGAATGCCACATCTCATAAATGGGCTCTTGGTGCTATTGCAGAGTTGCTTGATAATGCTGTTGATGAGATACAAAATGGAGCTACATTTGTCAATGTGGACAAAATAACAAATCCAAGGGATAACACTCCTGCTTTACTGTTTCAAGATGATGGAGGAGGAATGGATCCTGATTGTATGCGACAGTGCATGAGCTTGGGTTACTCACGGAAGAATACTAATACTACCATTGGGCAATATGGTAATGGTTTCAAGACAAGCACGATGAGATTGGGAGCTGATGTTGTAGTTTTCAGCTGTTGCAATCTCACAAGCGTTTCAACTCAAAGTATTGGATTACTTTCATATACGTTCTTGAGGGAGACTGGACATGAAGATATTATAGTTCCAATGGTGGACTATGAATTATCATTTTCAGGACAACGTAAAAGATTGATTCGTTCCACTGCAGAGGATTGGGCTCAAAATTTGTCAACTCTCTTGCAATGGTCACCTTACTCAACTGAAGTTGATTTACTCAAACAATTTGATGATATTGGATCACATGGCACAAAGGTTATTGTTTATAATTTATGGCTAAATGATGATGGTCAAATTGAGCTTGACTTTGAGTCAGACAAACAGGATATTGCATTGAGGGGAGGGCCTAAAGTTGATAAAATCGATGTTGCGAACAAGCAACAACTTAGTGAACAACATATTTCAAATCGCCTACGCTATTCTCTTCGTTTATATGCCTCTATATTATATCTTGAGTTGCCAAGCCATTTCAAAATTATATTGCGTGGTCGAGTGGTAGAGCATCATACGATTGCTGCTGATCTTAAATTTCCAGAATTTATTCTGTATAAACCACAAGTTGGTGGTAGCAAGGAGGTCTCAGTTGTCACTACAATTGGGTTCACAAAGGAAGCTCCTCTTGTAAATGTTCATGGCTTCAATGTTTACCACAAGAATCGTCTTATAATGCCATTTTGGAGGGTTTTTCATGAAAACAGCAGCAGAGGAAGAGGTGTTGTTGGTGTACTTGAAGCCAATTTCATTGAGCCTGCTCATGACAAACAAGACTTTGAAAGGACTGCTGTGTTACTCAGGCTTGAGACTCGATTGAAACAAATGACAATAGAATATTGGAATTTACATTGTGCTCTGATTGGGTATCAACCAAGTAATGCCAAGCCTATCAAGCCTCGAAATGTACCAAGTAACACCTCAGGGCCAACTTCTGGCCACCCTGTAGGACCGTCTCATAATCCTGCAGGGCCATATGAAGCTGTGCGACAGTCAGTTTCGAACTCGAGCACACCTCTTAGTGAAATGGCCTCACCATCACCAAATTTTGTGCCAATTCCAGCAGGTGTTGATACTAAGCCAGCAGCATTGAGGCCAGGTGTGATAAATCCACCTCATTTGTCAGATTCTGTGCCCACAAATTTCAGAAATGATAGTAAACATTCTTTATCCAGAATACCTTCTGTTAGAGGTACATCTCCCAACACCAGCACATCTGAAGAGACTCCAAGTGGTACGATAAACTCATCTCTTAGTGTACCTTTGGGAAGAGGTGTAAATGCTACAGCTTCGGCTCCTTCAACTCCACCACAACAATTTTCAGATCTTGAAGATTTTACTAGCAATCAGTTCAGGTGTCAGAATAATGGATGGACAGCTCGAAGAAGGGAAGAAATTAACGGTGCTCAAGACAGTGGACTAGGAAAAATCGAAGATTCTGCCAGTAGTCCCTTGGTTTCAAACAATCAAAGGGAACACCAAACTTCTAATGGTCCACTCTCCAGCTTGGCAAATGGATGTGCAAGTACAATTTCAAAAACAAAAAGGAAGATTTCAGAGCTCATTTCATCTGATGAGCTAGAATCACCGAAGAGACGGGCATTGGAAACTGTCAGTGGGTCTGCTAATGATGATCATTTGAATATTCAGTCTATGTCAGATGATGCAGAAATAGGAAGCATTCCTATGACTGAGCAGCCAAACCTATCTAAGGACAAATCTGTGAACTGTCAAGAGGTAGAGGAATTTCTAGAAGAAAATAGGAAGCTTCAGTCACAGTGCGTTGAGTATGAGATCAAGGAAAGAGAACTTGAAGAGAGGGTTAGGGAACTGGAGAATGAACTACTAGAAATTCAGCGCGAGTATGCAAAACTATTGATTGAGTCCCAATCACTAAGCACTGTGAAAGAGGAAACATAGCCGATGGGAGTGGTAGTTTTCATCTCTCTTGAGTGGATATTTATTGATTTTTGTAAACTTGCAGTTAATCATATCATTAGCCTCACCATATTTTTTGTCCTCGTAAATGACTGGCTAATTGATGTTCCCTATATCAGAAGATTTCACTCATTGTTTATGTGGCTCTTAATTTGTATGATGTATGTCAGTAGTTCAACATCCATGTGTTAGCACATGTTACCAGGCTTCTTCGATATTAAGTCATCCATGATAGGCTAAGTTGCTTTGTCATAGAATCCTTGATTTAGTCAGTTTCCATAAAACATCACTCCTTACGGATGTAGTAAGATGGAAATTTGGTTTGGGATTATCATTGTGTAATTTTCTCACTTAGAGTGCATCAATTTCATCTTGTAAAATTCTGAAGACAGTCTTTAAATTTTTGATTTTGTAAATAAATATTCTTATCAACAATTTCTCTGCTGTCTGATGTTTTTAATATCAGTTACCAAAATAAGCCTCTTCTTGGATGGTTCGGGTACAGTTAATTAAAGCAAAAAATTCTCCATTTGTATCCAAC

Ace file of the UniGene sp_v3.0_unigene2671

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Herpes_BLLF1 multi-domain protein	-	-	4.0e-06	20%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	56%
Sma3	Zinc finger protein, putative	-	-	9.041e-09	-

Source	Gene names
Sma3	AT4g24970; AT4g36270; AT4g36280; AT4g36290; At1g19100; At4g36280; At4g36290; At5g13130; At5g50780; B1156H12.4-1; C7A10.1020; F13M23.110; F23E13.160; F23E13.170; F23E13.180; GSVIVT00016039001; GSVIVT00017982001; GSVIVT00020694001; GSVIVT00036855001; LOC_Os

Source	GOs	Term	Type	Identity
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3	DNA ligase, ATP-dependent, conserved site	IPR016059	-	-
Sma3	4Fe-4S ferredoxin-type, iron-sulpur binding domain	IPR017896	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G19100.1	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein chr1:6595560-6601159 FORWARD LENGTH=663	63%
RefSeq	Arabidopsis thaliana	NP_173344.2	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein [Arabidopsis thaliana]	63%
RefSeq	Populus trichocarpa	XP_002321614.1	predicted protein [Populus trichocarpa]	62%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: D7SHP0

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is longer than subject: 850 - 709

Fln protein: MSLPEVIDLSSDEDDCMDDTAADVCGHETSFPGSDNGKRKDYCVTETVKQELFEQPSNALDSADGSTFIMPTKKQTGVCRQFWKAGDYDVRSSSKRTSQNGMDHVRVHPKFLHSNATSHKWALGAIAELLDNAVDEIQNGATFVNVDKITNPRDNTPALLFQDDGGGMDPDCMRQCMSLGYSRKNTNTTIGQYGNGFKTSTMRLGADVVVFSCCNLTSVSTQSIGLLSYTFLRETGHEDIIVPMVDYELSFSGQRKRLIRSTAEDWAQNLSTLLQWSPYSTEVDLLKQFDDIGSHGTKVIVYNLWLNDDGQIELDFESDKQDIALRGGPKVDKIDVANKQQLSEQHISNRLRYSLRLYASILYLELPSHFKIILRGRVVEHHTIAADLKFPEFILYKPQVGGSKEVSVVTTIGFTKEAPLVNVHGFNVYHKNRLIMPFWRVFHENSSRGRGVVGVLEANFIEPAHDKQDFERTAVLLRLETRLKQMTIEYWNLHCALIGYQPSNAKPIKPRNVPSNTSGPTSGHPVGPSHNPAGPYEAVRQSVSNSSTPLSEMASPSPNFVPIPAGVDTKPAALRPGVINPPHLSDSVPTNFRNDSKHSLSRIPSVRGTSPNTSTSEETPSGTINSSLSVPLGRGVNATASAPSTPPQQFSDLEDFTSNQFRCQNNGWTARRREEINGAQDSGLGKIEDSASSPLVSNNQREHQTSNGPLSSLANGCASTISKTKRKISELISSDELESPKRRALETVSGSANDDHLNIQSMSDDAEIGSIPMTEQPNLSKDKSVNCQEVEEFLEENRKLQSQCVEYEIKERELEERVRELENELLEIQREYAKLLIESQSLSTVKEET*

Protein Length: 851

Fln nts: AGATTAAGAAAGGGTTCGATAACCAGTTCTCGCTTTGTGCTATTGGCGCCAAGTGGGACCAACACAATCAGAATACATCCATCAAGTAACAAGTAGCAAAAGCGGGCTACCCTTTCTTCAGCATTCAATTCCATCCAAGTAGAGATTTAATTTGCTCGAGGAAGGTAGACGAAAAAAATTTGCAATTCTTGGCTTCAGTGGCCTAGGGTTTGAAGAATTCGCAGGCTTCATTGGCTACATGTTGATAAAATTATTCGGATCAAAGTACATAGAGAAGAACAGATTTTATTAACGGTATTGTGTGGGACATTTAAAGGCGCTCAACGCGGTCCAGTAAACC_-_ATGTCCCTTCCAGAGGTCATAGACCTTAGCAGTGATGAAGATGATTGCATGGATGATACGGCGGCTGATGTCTGTGGGCATGAGACTTCATTTCCAGGTTCAGATAATGGTAAAAGGAAAGATTATTGTGTGACTGAGACTGTAAAACAGGAATTATTTGAACAGCCTAGCAATGCATTGGATTCTGCAGATGGAAGCACTTTTATTATGCCAACAAAAAAACAGACTGGAGTATGCCGACAATTTTGGAAAGCTGGGGATTATGACGTGCGATCATCTTCAAAGAGAACCTCCCAAAATGGCATGGATCATGTTCGTGTTCATCCTAAATTTCTTCATTCGAATGCCACATCTCATAAATGGGCTCTTGGTGCTATTGCAGAGTTGCTTGATAATGCTGTTGATGAGATACAAAATGGAGCTACATTTGTCAATGTGGACAAAATAACAAATCCAAGGGATAACACTCCTGCTTTACTGTTTCAAGATGATGGAGGAGGAATGGATCCTGATTGTATGCGACAGTGCATGAGCTTGGGTTACTCACGGAAGAATACTAATACTACCATTGGGCAATATGGTAATGGTTTCAAGACAAGCACGATGAGATTGGGAGCTGATGTTGTAGTTTTCAGCTGTTGCAATCTCACAAGCGTTTCAACTCAAAGTATTGGATTACTTTCATATACGTTCTTGAGGGAGACTGGACATGAAGATATTATAGTTCCAATGGTGGACTATGAATTATCATTTTCAGGACAACGTAAAAGATTGATTCGTTCCACTGCAGAGGATTGGGCTCAAAATTTGTCAACTCTCTTGCAATGGTCACCTTACTCAACTGAAGTTGATTTACTCAAACAATTTGATGATATTGGATCACATGGCACAAAGGTTATTGTTTATAATTTATGGCTAAATGATGATGGTCAAATTGAGCTTGACTTTGAGTCAGACAAACAGGATATTGCATTGAGGGGAGGGCCTAAAGTTGATAAAATCGATGTTGCGAACAAGCAACAACTTAGTGAACAACATATTTCAAATCGCCTACGCTATTCTCTTCGTTTATATGCCTCTATATTATATCTTGAGTTGCCAAGCCATTTCAAAATTATATTGCGTGGTCGAGTGGTAGAGCATCATACGATTGCTGCTGATCTTAAATTTCCAGAATTTATTCTGTATAAACCACAAGTTGGTGGTAGCAAGGAGGTCTCAGTTGTCACTACAATTGGGTTCACAAAGGAAGCTCCTCTTGTAAATGTTCATGGCTTCAATGTTTACCACAAGAATCGTCTTATAATGCCATTTTGGAGGGTTTTTCATGAAAACAGCAGCAGAGGAAGAGGTGTTGTTGGTGTACTTGAAGCCAATTTCATTGAGCCTGCTCATGACAAACAAGACTTTGAAAGGACTGCTGTGTTACTCAGGCTTGAGACTCGATTGAAACAAATGACAATAGAATATTGGAATTTACATTGTGCTCTGATTGGGTATCAACCAAGTAATGCCAAGCCTATCAAGCCTCGAAATGTACCAAGTAACACCTCAGGGCCAACTTCTGGCCACCCTGTAGGACCGTCTCATAATCCTGCAGGGCCATATGAAGCTGTGCGACAGTCAGTTTCGAACTCGAGCACACCTCTTAGTGAAATGGCCTCACCATCACCAAATTTTGTGCCAATTCCAGCAGGTGTTGATACTAAGCCAGCAGCATTGAGGCCAGGTGTGATAAATCCACCTCATTTGTCAGATTCTGTGCCCACAAATTTCAGAAATGATAGTAAACATTCTTTATCCAGAATACCTTCTGTTAGAGGTACATCTCCCAACACCAGCACATCTGAAGAGACTCCAAGTGGTACGATAAACTCATCTCTTAGTGTACCTTTGGGAAGAGGTGTAAATGCTACAGCTTCGGCTCCTTCAACTCCACCACAACAATTTTCAGATCTTGAAGATTTTACTAGCAATCAGTTCAGGTGTCAGAATAATGGATGGACAGCTCGAAGAAGGGAAGAAATTAACGGTGCTCAAGACAGTGGACTAGGAAAAATCGAAGATTCTGCCAGTAGTCCCTTGGTTTCAAACAATCAAAGGGAACACCAAACTTCTAATGGTCCACTCTCCAGCTTGGCAAATGGATGTGCAAGTACAATTTCAAAAACAAAAAGGAAGATTTCAGAGCTCATTTCATCTGATGAGCTAGAATCACCGAAGAGACGGGCATTGGAAACTGTCAGTGGGTCTGCTAATGATGATCATTTGAATATTCAGTCTATGTCAGATGATGCAGAAATAGGAAGCATTCCTATGACTGAGCAGCCAAACCTATCTAAGGACAAATCTGTGAACTGTCAAGAGGTAGAGGAATTTCTAGAAGAAAATAGGAAGCTTCAGTCACAGTGCGTTGAGTATGAGATCAAGGAAAGAGAACTTGAAGAGAGGGTTAGGGAACTGGAGAATGAACTACTAGAAATTCAGCGCGAGTATGCAAAACTATTGATTGAGTCCCAATCACTAAGCACTGTGAAAGAGGAAACATAGCCGATGGGAGTGGTAGTTTTCATCTCTCTTGAGTGGATATTTATTGATTTTTGTAAACTTGCAGTTAATCATATCATTAGCCTCACCATATTTTTTGTCCTCGTAAATGACTGGCTAATTGATGTTCCCTATATCAGAAGATTTCACTCATTGTTTATGTGGCTCTTAATTTGTATGATGTATGTCAGTAGTTCAACATCCATGTGTTAGCACATGTTACCAGGCTTCTTCGATATTAAGTCATCCATGATAGGCTAAGTTGCTTTGTCATAGAATCCTTGATTTAGTCAGTTTCCATAAAACATCACTCCTTACGGATGTAGTAAGATGGAAATTTGGTTTGGGATTATCATTGTGTAATTTTCTCACTTAGAGTGCATCAATTTCATCTTGTAAAATTCTGAAGACAGTCTTTAAATTTTTGATTTTGTAAATAAATATTCTTATCAACAATTTCTCTGCTGTCTGATGTTTTTAATATCAGTTACCAAAATAAGCCTCTTCTTGGATGGTTCGGGTACAGTTAATTAAAGCAAAAAATTCTCCATTTGTATCCAAC

Fln Alignment:

Contig2671___KDYCVTETVKQELFEQPSNALDSADGSTFIMPTKKQ---------------TGVCRQFWKAGDYDVRSSSKRTSQNGMDHVRVHPKFLHSNATSHKWALGAIAELLDNAVDEIQNGATFVNVDKITNPRDNTPALLFQDDGGGMDPDCMRQCMSLGYSRKNTNTTIGQYGNGFKTSTMRLGADVVVFSCCNLTSVSTQSIGLLSYTFLRETGHEDIIVPMVDYELSFS-GQRKRLIRSTAEDWAQNLSTLLQWSPYSTEVDLLKQFDDIGSHGTKVIVYNLWLNDDGQIELDFESDKQDIALRGGPKVDKIDVANKQQLSEQHISNRLRYSLRLYASILYLELPSHFKIILRGRVVEHHTIAADLKFPEFILYKPQVGGSKEVSVVTTIGFTKEAPLVNVHGFNVYHKNRLIMPFWRVFHENSSRGRGVVGVLEANFIEPAHDKQDFERTAVLLRLETRLKQMTIEYWNLHCALIGYQPSNAKPIKPRNVPSNTSGPTSGHPVGPSHNPAGPYEAVRQSVS-NSSTPL--SEMASPSPNFVPIPAGVDTKPAALRPG
D7SHP0______________KTHCRTQESEEN---RDSNALSTAQSSTSILDQGQSPMDDTSLSSTSPICPAPLCRQFWKAGNYDDELGSKVTLQNGKNYLHVHPMFLHSNATSHKWAFGAIAELLDNAVDEIQNGATFVIVDKTSNPRDGSPALLIQDDGGGMGPEAMRCCMSFGFSDKKSKSAIGQYGNGFKTSSMRLGADVIVFSRHLDNGKLTQSAGLLSYSFLRQTGHDRIVVPMVDYEFNTSTSNMEPLHRYGKKHFTSNLSILLRWSPYSTEQELLKQFDDIGYHGTKVVIYNLWFSDDGNVELDFDSDPEDIRI-GGDIKQVTTIPAWKTINEQHIANRFHISLRVYLSILYLRIPQNFNIILRGKVVEHHNIANDLKFPEFILYRPQTGGLVEGTVVTTIGFLKEAPQVNIHGFNVYHKNRLILPFWQVVNYSDSRGRGVVGVLEANFIEPIHNKQDFERTSLFQKLEGRLKEMTWEYWDYHCGLIGYQVKK----KPRTLVS---------PHISSH--GSPHIAMEKPIGLNQSSPAIGNIKATPPGGAFQHPAATASHCLAGRPG

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
547	75			25	0.996473
554			75	25	0.996473
586	83	16			0.994512
587	83		16		0.994512
589		16		83	0.994512
590			16	83	0.994512
593	16		83		0.994512
594	83	16			0.994512
595	83	16			0.994512
596	83		16		0.994512
601			83	16	0.994512
602		16	83		0.994512
603	16		83		0.994512
604	83	16			0.994512
606		16		83	0.994512
716		25		75	0.996473
938	83			16	0.994512
1299	90			10	0.90298
1318	11			88	0.923564
1339	12		87		0.992554
1342	87			12	0.992554
1476	80			20	0.995493
1536	87			12	0.992554
1537		87	12		0.992554
1752		90		10	0.90298
2156	11	88			0.923564
2538	20	80			0.995493
2575	25		75		0.996473
2720	42		57		1.0
2990		20		80	0.995493
3337	10			90	0.90298
3348	71		28		1.0
3349	14	85			0.993533
3352	20			80	0.995493
3353			20	80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain