SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2657

Length: 3541 nt

UniGene Fasta

>sp_v3.0_unigene2657
AGTCCGCCTTTAACCCTGCGAGGACGATGAACGGCAAAAATGGAAAGCAGAAGTGGCTGTCGTGGAATGCTTGAAACCCTGGAAAATCTTGTTCGTGACCGGCTTCATTCGGAGGCCGTATACGCGACTTTCGGAGCCAATTCCTCAATAACAAGGTATGCTCTAACATCCGCGTCCTCTTTTAAGGTGAAAAGTGTCGGATATTGAGCTATATTTTGCTCGTAGTGTCCCGAGATTGTGAATTCCCGAGTATGTTAAAGTCTAGGTATATGGAATTTGAGCTATATTTGGTCCGAGGGGCGAAGCAGATTAGGACTTGGTACGGTTGCTTTGAAATATGGCCAGAATTAGTGTAGTTCAAGTATTATTTTTCGCTTTTCTGCGGCCACAAACGGTGCATTTGACGGGAATTAGGGTAAAAACCCAGTGAAAATTGTCTCGTTTTGCCTTTCAAGTATGCAACAACGTTTAGCAGGCCGCAGCAGCCTTTTAGCGCCGTATTCTTCTGTATTCGGAGGTGCTGTGTGGTGAATAATCTCTGGATTTTGAGTTCCATGCGTTCAGAGTTAAACAAAGACACAATCTGTTCGGAATTATTCTCGAACGGGAATTCTATTGAATTTCAGAGTTGATGCTGCGAAAATGGGTAAATTTTGAGCTATCTTCCTTTCACAACTACAATAGGAATGAAATTTGCAGTTTCATTGCCTCTTGATCTGATATCCTCAGCTTTTAGCAGTCTGCACGTTTGATTTGGTCGGTATCTTCACTGCTTTGTGCTTTGTACAGTTAAAATCGACGACTTAACAGCTATTTTCTGGTTAGCAAGTCTTAAAAAAGGGTCTTTTCCATTGGGATATGATCCAAGTTCGAAAATTCGCAAGGGATGCCAATAGGAGGGTTTGACTTGTATGCAAGATGAACACGTGGTGATTTTGGGCCGAGATTTTGTTATTTTCATAAAGGTTTTGTTTGTGAGGAATCCGTGAGACAAATTTCCTGCATAGGAAAGTTCACCATTCGCGGATGTTGTTGCCTCGGTCTAGGGGATGCTTGCGACGACAAGACACAGTAATTGAATTTGTTGCTTGCTTAGAAGTCTAACACATTTGACAAATACTTCAAATAAAGCATAGAAGCTTTGAGAAGCGGAGCACATCCGCTATTTCTGGCTTCTGTATGTCTTTAAAGGCATCGAACAACTTCCATGGCTGCTGGTTCCACAGACGGAGATTCTGAAAGCTTTAGTGACAGGCGTCCTTTACTCATGGAGCATATGTCTAGTTTATCAGGTCAAGAGCATTTTGTTATAGATGTAAATTCAGGTAGCTCCGCGGTTTCATTGGCTCCTCAAGGTGAAGTGGCAACTGCCGTGGATGCACAGGAAGTGGTATCATCGACAAGCAGACAAGCAACATCTCGACTGCCTCCTCCATCTTCGTCATTGAGAAGCAGCTCCTTTTCCAGACCTGCTGACTTACGAAACTATGGCCGCCAGCAACGAGCTAGCCCATTGAATTCAGGACTTTGGATTTCAATTGAACTTACCTTAACAGTTAGTCAGATATTAGCTTCCATTATTGTTTTATCACTCTCAAGAAATGAGAATCCTCGGGCTCCATTATTTGTTTGGGTCGTGGGTTATGCTACAGGGTGTCTTGCCACACTTCCTCTTTTGTATTGGCGATACACACACCGATATATTCATGTGCCGGAGCAAGATCCTGTATCTTCATCCATTGCTTCCCATTCTAGTCCTCCTCCTCCTCAAACTACCTCTTACACTGCAATGTCAGTTCCTCAAGATTCACGAGAGGAAGAAGGCCCAAGTACATCTCAGGCTTCAAGGAGCCGTCAGCATACGGCAGGAAGGAATCCCAGGCTTAATGTATATGTAGAACGGTTCAAATTGGCTTTAGACTGCTTCTTTGCTGTTTGGTTTGTTGTTGGGAACGTGTGGATATTTGGTGGTCACTCATCCTCAAGTGATGCTCCAAATCTTTACAGGTTGTGTATTGTGTTTCTCACATTTAGTTGTATAGGTTATGCCATGCCATTCATTTTGTGTGCGACAGTATGTTGCTGCCTACCCTGTATAATACATATTCTTGGATTTCGAGAGGACCAGAGTCAGACAAGAGGAGCTTCACCTGAAGTGATTAATACTTTGCCAACTTACAAGTTCAAAGCAAAAAGTACAACCGAAAGTAATGGAAATAAAGATGACAGTGAAGTTGACTCAGAAAGCGCAGGTGAGGGTGGCTTTATAGCAGCTGGAACTGATAAAGAGAGACTTATTTCAGGCGAAGATGCGATTTGTTCCATTTGCTTGGGCAAATACCAGGACAATGATGAGCTAAGGGAGTTATCATGCACACATTGCTTCCATGTAGAATGTGTTGATAAATGGTTGAAAATAAATGCATCTTGTCCTCTTTGCAAACATGAAATTGGGGAATCCAGTGAAATAGCACCAGAATCTTCTGCACAAGCAGGACAGCGAAGAGATGGACAATTGGTGTGATGAGCCAGTATGAATCAGGCATGAGTTGGTGCTGCACTGCATAGATGAACCATAGTGAGGAAAGGAGCAGCATAACCCTCAATATTGCTGTTTTCTAGTTGTAGACAATGCATCTCTTGCCATAAAAGAGAGCAACCTGATGGTGCATGACCGTTACAGCTAGGGAAGACTTTAAAAGTTTGTAAAACTAAGCATAGCTCTTAAACACTGAAGTTAAAAGACATGATTGGAATGTGCAAGTGGTTCAGTATCCAAATATTGAAGGTTGCAGAATATGGAGCTACTATGCAAACGAGTAACTTTATCTATATTTTCACAAGATCATACAATGGGAAACGTTGAGATAACAACTGCATCGGTGAACCAGAATAGTATAAAAGTTCTTGCAACTAAAGGGATGAATAATTGCATGGTGTGAATTAAGAATGACCATGTAGAGCTGCTATACAGACTTCTCCAAGGTTTTATATTTGAGGAGTGCGCCTATTGATGTTGTGCAAAAATTTCAGAAATTAAGTTCTGCGGCATTTATCAAGGTTGTTTGAGCCATTTAAATAGCAAGTTTTTGTTTCTCGTGTCACAAGTACTTTCAGGAAAGCAGGTTAGACGATAAAATGCATCTTCCCAATTTACTGTATTTCTTGTTTCATAAGATTCTCTCAATGTCCTTAGCACGTGGCTTTCATTATTGGAACCAATGTATGATGTGTAGCAGAGGCAATGACTCTATGGAATCTCTCACCAAACACTGTTTTGGCTTGTAGATAGCTCTAGTTATAATGCTGCAGTGACAAACACATCTAGTTGGGGCAGTGAATGACGCTTTTGTCATTCTCTTTTGGTTTCAGGCACGGTCATTAAGTCTCTTTGGATTCATAAACTTTCCAATTGTGATTCATTAGGCTTCTTTTGTTTATATCTGGCACTCACGTTGGATCGATTCCATATTGTATTCGATTCTGAAATATATCAACAGATGCTTCATAATGAGTTAATATGCATTTAATTTTCTTTCTC

Ace file of the UniGene sp_v3.0_unigene2657

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ring finger protein, putative n=1 Tax=Ricinus communis RepID=B9RS95_RICCO	-	-	0.0	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	36%

Source	Gene names
Sma3	AT1G80400; AT4g32600; At1g80400; At1g80400/F5I6.15; At4g32600; F4D11.200; F5I6.15; GSVIVT00016805001; GSVIVT00032529001; GSVIVT00034460001; GSVIVT00034463001; GSVIVT00034464001; OJ1316_E06.27; OSJNBa0054K20.13; OSJNBb0024J13.14; Os01g0178700; Os02g0787500

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	0.0	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G32600.1	RING/U-box superfamily protein chr4:15724010-15725737 FORWARD LENGTH=453	52%
RefSeq	Arabidopsis thaliana	NP_194986.2	C3H4 type zinc finger protein [Arabidopsis thaliana]	52%
RefSeq	Populus trichocarpa	XP_002309588.1	predicted protein, partial [Populus trichocarpa]	55%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PSJ7

Fln msg: your sequence is longer than subject: 439 - 397

Fln protein: MAAGSTDGDSESFSDRRPLLMEHMSSLSGQEHFVIDVNSGSSAVSLAPQGEVATAVDAQEVVSSTSRQATSRLPPPSSSLRSSSFSRPADLRNYGRQQRASPLNSGLWISIELTLTVSQILASIIVLSLSRNENPRAPLFVWVVGYATGCLATLPLLYWRYTHRYIHVPEQDPVSSSIASHSSPPPPQTTSYTAMSVPQDSREEEGPSTSQASRSRQHTAGRNPRLNVYVERFKLALDCFFAVWFVVGNVWIFGGHSSSSDAPNLYRLCIVFLTFSCIGYAMPFILCATVCCCLPCIIHILGFREDQSQTRGASPEVINTLPTYKFKAKSTTESNGNKDDSEVDSESAGEGGFIAAGTDKERLISGEDAICSICLGKYQDNDELRELSCTHCFHVECVDKWLKINASCPLCKHEIGESSEIAPESSAQAGQRRDGQLV*

Protein Length: 440

Fln nts: AGTCCGCCTTTAACCCTGCGAGGACGATGAACGGCAAAAATGGAAAGCAGAAGTGGCTGTCGTGGAATGCTTGAAACCCTGGAAAATCTTGTTCGTGACCGGCTTCATTCGGAGGCCGTATACGCGACTTTCGGAGCCAATTCCTCAATAACAAGGTATGCTCTAACATCCGCGTCCTCTTTTAAGGTGAAAAGTGTCGGATATTGAGCTATATTTTGCTCGTAGTGTCCCGAGATTGTGAATTCCCGAGTATGTTAAAGTCTAGGTATATGGAATTTGAGCTATATTTGGTCCGAGGGGCGAAGCAGATTAGGACTTGGTACGGTTGCTTTGAAATATGGCCAGAATTAGTGTAGTTCAAGTATTATTTTTCGCTTTTCTGCGGCCACAAACGGTGCATTTGACGGGAATTAGGGTAAAAACCCAGTGAAAATTGTCTCGTTTTGCCTTTCAAGTATGCAACAACGTTTAGCAGGCCGCAGCAGCCTTTTAGCGCCGTATTCTTCTGTATTCGGAGGTGCTGTGTGGTGAATAATCTCTGGATTTTGAGTTCCATGCGTTCAGAGTTAAACAAAGACACAATCTGTTCGGAATTATTCTCGAACGGGAATTCTATTGAATTTCAGAGTTGATGCTGCGAAAATGGGTAAATTTTGAGCTATCTTCCTTTCACAACTACAATAGGAATGAAATTTGCAGTTTCATTGCCTCTTGATCTGATATCCTCAGCTTTTAGCAGTCTGCACGTTTGATTTGGTCGGTATCTTCACTGCTTTGTGCTTTGTACAGTTAAAATCGACGACTTAACAGCTATTTTCTGGTTAGCAAGTCTTAAAAAAGGGTCTTTTCCATTGGGATATGATCCAAGTTCGAAAATTCGCAAGGGATGCCAATAGGAGGGTTTGACTTGTATGCAAGATGAACACGTGGTGATTTTGGGCCGAGATTTTGTTATTTTCATAAAGGTTTTGTTTGTGAGGAATCCGTGAGACAAATTTCCTGCATAGGAAAGTTCACCATTCGCGGATGTTGTTGCCTCGGTCTAGGGGATGCTTGCGACGACAAGACACAGTAATTGAATTTGTTGCTTGCTTAGAAGTCTAACACATTTGACAAATACTTCAAATAAAGCATAGAAGCTTTGAGAAGCGGAGCACATCCGCTATTTCTGGCTTCTGTATGTCTTTAAAGGCATCGAACAACTTCC_-_ATGGCTGCTGGTTCCACAGACGGAGATTCTGAAAGCTTTAGTGACAGGCGTCCTTTACTCATGGAGCATATGTCTAGTTTATCAGGTCAAGAGCATTTTGTTATAGATGTAAATTCAGGTAGCTCCGCGGTTTCATTGGCTCCTCAAGGTGAAGTGGCAACTGCCGTGGATGCACAGGAAGTGGTATCATCGACAAGCAGACAAGCAACATCTCGACTGCCTCCTCCATCTTCGTCATTGAGAAGCAGCTCCTTTTCCAGACCTGCTGACTTACGAAACTATGGCCGCCAGCAACGAGCTAGCCCATTGAATTCAGGACTTTGGATTTCAATTGAACTTACCTTAACAGTTAGTCAGATATTAGCTTCCATTATTGTTTTATCACTCTCAAGAAATGAGAATCCTCGGGCTCCATTATTTGTTTGGGTCGTGGGTTATGCTACAGGGTGTCTTGCCACACTTCCTCTTTTGTATTGGCGATACACACACCGATATATTCATGTGCCGGAGCAAGATCCTGTATCTTCATCCATTGCTTCCCATTCTAGTCCTCCTCCTCCTCAAACTACCTCTTACACTGCAATGTCAGTTCCTCAAGATTCACGAGAGGAAGAAGGCCCAAGTACATCTCAGGCTTCAAGGAGCCGTCAGCATACGGCAGGAAGGAATCCCAGGCTTAATGTATATGTAGAACGGTTCAAATTGGCTTTAGACTGCTTCTTTGCTGTTTGGTTTGTTGTTGGGAACGTGTGGATATTTGGTGGTCACTCATCCTCAAGTGATGCTCCAAATCTTTACAGGTTGTGTATTGTGTTTCTCACATTTAGTTGTATAGGTTATGCCATGCCATTCATTTTGTGTGCGACAGTATGTTGCTGCCTACCCTGTATAATACATATTCTTGGATTTCGAGAGGACCAGAGTCAGACAAGAGGAGCTTCACCTGAAGTGATTAATACTTTGCCAACTTACAAGTTCAAAGCAAAAAGTACAACCGAAAGTAATGGAAATAAAGATGACAGTGAAGTTGACTCAGAAAGCGCAGGTGAGGGTGGCTTTATAGCAGCTGGAACTGATAAAGAGAGACTTATTTCAGGCGAAGATGCGATTTGTTCCATTTGCTTGGGCAAATACCAGGACAATGATGAGCTAAGGGAGTTATCATGCACACATTGCTTCCATGTAGAATGTGTTGATAAATGGTTGAAAATAAATGCATCTTGTCCTCTTTGCAAACATGAAATTGGGGAATCCAGTGAAATAGCACCAGAATCTTCTGCACAAGCAGGACAGCGAAGAGATGGACAATTGGTGTGA___TGAGCCAGTATGAATCAGGCATGAGTTGGTGCTGCACTGCATAGATGAACCATAGTGAGGAAAGGAGCAGCATAACCCTCAATATTGCTGTTTTCTAGTTGTAGACAATGCATCTCTTGCCATAAAAGAGAGCAACCTGATGGTGCATGACCGTTACAGCTAGGGAAGACTTTAAAAGTTTGTAAAACTAAGCATAGCTCTTAAACACTGAAGTTAAAAGACATGATTGGAATGTGCAAGTGGTTCAGTATCCAAATATTGAAGGTTGCAGAATATGGAGCTACTATGCAAACGAGTAACTTTATCTATATTTTCACAAGATCATACAATGGGAAACGTTGAGATAACAACTGCATCGGTGAACCAGAATAGTATAAAAGTTCTTGCAACTAAAGGGATGAATAATTGCATGGTGTGAATTAAGAATGACCATGTAGAGCTGCTATACAGACTTCTCCAAGGTTTTATATTTGAGGAGTGCGCCTATTGATGTTGTGCAAAAATTTCAGAAATTAAGTTCTGCGGCATTTATCAAGGTTGTTTGAGCCATTTAAATAGCAAGTTTTTGTTTCTCGTGTCACAAGTACTTTCAGGAAAGCAGGTTAGACGATAAAATGCATCTTCCCAATTTACTGTATTTCTTGTTTCATAAGATTCTCTCAATGTCCTTAGCACGTGGCTTTCATTATTGGAACCAATGTATGATGTGTAGCAGAGGCAATGACTCTATGGAATCTCTCACCAAACACTGTTTTGGCTTGTAGATAGCTCTAGTTATAATGCTGCAGTGACAAACACATCTAGTTGGGGCAGTGAATGACGCTTTTGTCATTCTCTTTTGGTTTCAGGCACGGTCATTAAGTCTCTTTGGATTCATAAACTTTCCAATTGTGATTCATTAGGCTTCTTTTGTTTATATCTGGCACTCACGTTGGATCGATTCCATATTGTATTCGATTCTGAAATATATCAACAGATGCTTCATAATGAGTTAATATGCATTTAATTTTCTTTCTC

Fln Alignment:

Contig2657___ISIELTLTVSQILASIIVLSLSRNENPRAPLFVWVVGYATGCLATLPLLYWRYTHRYIHVPEQDXXXXXXXXXXXXXXXXXXXXXAMSVPQDSREEEGPSTSQASR--SRQHTAGRNPRLNVYVERFKLALDCFFAVWFVVGNVWIF-GGHSSSSDAPNLYRLCIVFLTFS------CIGYAMPFILCATVCCCLPCIIHILGFREDQSQTRGASPEVINTLPTYKFKAKSTTESNGNKDDSEVDSESAGEGGFIAAGTDKERLISGEDAICSICLGKYQDNDELRELSCTHCFHVECVDKWLKINASCPLCKHEIGESSEIAPE
C0PSJ7______________VVLDIIWNLAFVVVATVVLVLSRHENPNMPVRVWVVGYALQCLLHMICVCFEYRRRHSNAQQQRSNSGGQSGHTNNNNNSAN----QQSPGEQQESDDATDEEVDEVLSTERTS--------IAKRLESANTMFSFIWWIVGFYWISAGGQILTHDAPQLYWLCVVFLAFDVFFVVFCV--ALACVIGIAVCCCLPCIIAILYAVADQE---GASEEDIGLLPKYKFKSIGGSE----KISGEKSGPFGGIMNLCTGESSTERVLSAEDAECCICLSTYDDGVELRELPCSHHFHCTCIDKWLRINATCPLCKYNIIKSSNNARE

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
2826			10	90	0.90298
2828		10		90	0.90298
2829	90		10		0.90298
2831		90		10	0.90298
2858	11		88		0.923564
2883		11	88		0.923564
2884	11		88		0.923564
2886			88	11	0.923564
2972	87		12		0.992554
2973		85	14		0.993533
2986		14	85		0.993533
2989			14	85	0.993533
2991			14	85	0.993533
2993		14		85	0.993533
2994	85	14			0.993533
2997			12	87	0.992554
2999	88			11	0.923564
3001		11	88		0.923564
3003		11	88		0.923564
3005		11	88		0.923564
3006	11	88			0.923564
3064		10		90	0.90298
3067		10		90	0.90298
3130	86	13			0.999973
3132	86			13	0.999973
3135	86			13	0.999973
3136			13	86	0.999973
3138	86	13			0.999973
3139	86	13			0.999973
3140	86			13	0.999973
3143		88	11		0.999937
3144	77	11	11		0.999842
3146		83	16		1.0
3148		11	5	83	0.999887
3150	11	83		5	0.999887
3153	5	5		16	1.0
3155	88		11		0.999937
3163		11	88		0.999937

SSRs (tot: 1)

Start position	End position	Sequence	Length
1756	1769	TCC TCC TCC TCC TC	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain