SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2640

Length: 3025 nt

UniGene Fasta

>sp_v3.0_unigene2640
CGGCCTCCCACACGCTATTGGGATTGGGATTGTGAGTGTGATCTCTCTGTGTGAGTGCTTCTTCGATTCTGCTCAAGAACTCCATTAAATATATTGATAGCTGGTTCTTGGCATACTTTATTTATTGAGCGGAGTGTTGAGAAGCTCATGGAAAAGGGCTGAATGCAAAAGTCAGATGGCCTAGCAATCTGTCCCTTGGGCTAATCTGTATGGTCATGGACGTTAAAATTCCTCCTTTTCTTTCTTAATCAGGGCTCTGGGCTGCTTCAATTCTTGAAATCAATCACCAGATTGTACTCAGATCAGATCAGATCAGGATCTAATGACAATGAACAGAGATTTCAAGGGTTGAATTTTACAGAGCCGTGTAAGAAAAGACCTGCAAGTGCTCTCTGGATTCTTATTTTATAAATGGTTGTTTTTCTATTTTTTTTCTTAGTCACGTTTGAATGTTTGGGTGCCGTGTGTTTGTCAAATTTGGCGCGCTGTCGGAGCAGAGAAATGCAAAAGATGCGAGTAGCTTTTGCAATTATTGCCGTGTTCAGCACGTAAAGTCGACTTGGAATCCGACAAGGGCGCCTACAATATTATGGTCGACTGAATCTGACAATATTTCATGTGTATTGAGTCTCTGATTCCATTGGCCCTGTATACATGACTTTGATCTTGTACCCGGATTGACTGATTTTGCCCATCCTGGGATTTAATATTTTGATGCTGCATCATGGAATTTGTGGATACTGGATAGATCCCTGCAGGTTCTGTCTGGATTCTGAGAGGTAAGCAGATGTGTATGCTGCTGGTTAGATTTTATTGGTTCAAAGTGGAGTGTAAGACAATAGAGAAGAAAGAAAGGAAGGAAGATACTTTATAGTTTGTAGAAGTTCTTGGGAAAAGTGTGATCCCAAGAAACCACAGGGGGGTAAACGTATCTGACGATGTGTATGGAAAAGCTTCGTTTCTGACTGAAAAGCTTTCTGAAGTCATCTGATAATGGAAAAAGTTCATCTTACAAGTACAGCGCTCAACATGCCTCTTATACCCAACTCAGAATAAGGTGAAACTACTCCATTATCAAATACTGATTTCTATTTGGGATTTTATTATTATTTTTTTGATACAGGCCATGGCAGGGCAACAGAAGAGAAGCGAGAGCATTGGCCAAGAATGTAATATGGATGTTGTGTGGAAATTAAGTACAGGAGAGAGTCCATCTGCAGTTATCAGGTCCAAGGTTCGAAACCCAAAAGAGGAGGATGTTCATAATAATCAGGCTTCAACGACTACGAGTAATCCTAATATCATGAATACGCCGAGTCATCATGGGGTTTTCGGTGAACTGGGTTGGAACATGGATACTGATTTTCTGGATCGACATGTGCAGCCCACATCAGAAGGCGGCATGGGTTCAAGAATTGGCTCAGGATTGATGAGTACAGATGTGGATGACTTTGCAGGGTTTGAGTCTCCTTACATGAGCTTTACTCAGTGTCTTCAAGCAGGATTGCAGATGGGTGAAGCAGATTATTCTGCCTTATCTAAATCTTTGGCATGTGGAGAATTAGGGGACCATGAGCAGCAGCAGCAGCCTGAGTTTCCTGAATATGATCAAGAAATCAAAGTTCAGGCCAATTGCAAGTCCCAAAACCCTAGTGCCATTCAACTTGGTCCATTTATGGCAGAAGCTCAAGTAGGAAGTCGATCAGGGGACATGTCAACGGTTCCAGGCACACCAAATTCATCAATATCTTCTTCATCCAGCGAGGGGCACGAATTAGAACAGTCGAGCCTCGTTGCACCCTCCTCGGTCACCACAAACAGCACTGCAGCGAAAGGACAAGGGCCTGCTGATACTGAGTCTCAACCAGACCTGACTACTGCCGAGAAGCCTTCAATGGAGCCCAAGAAACCGCCAAGAAAGAAAGGTCAGAAACGAAACAGGGAGCCCAGATTTGCATTCATGACCAAAAGTGATGTGGATCATTTGGAAGATGGCTATAGATGGCGCAAATATGGCCAAAAGGCTGTCAAAAACAGCCCTTTCCCCAGGAGTTACTATCGTTGCACAAATGGAAAATGCTCAGTGAAGAAGAGAGTGGAGCGTTCGTCAGAAGATCCAGGAATTGTGATTACGACATATGAAGGACAACATTCTCATCCAAGCCCGGCCATATTGCGTGGGTCAGCAGAATCCCAATCCCACTTTTCAGATCAAAGATTGAATTCTCCCTTCACTCAAACGCCATTGATCAGATTCCCTCCCCACCCAATGATGTTGAGTAGTACTAACCAGGTCCCAGCTGCTTCCCCTTCCTCTACTAATAATTTTCACCACCTTGGGTCCATCAAGTCCTGCATGAACCCTCATCTTCTCCCTCAGTCCCACCATGGTAATTCCCAGCCTCACCCAACTCATCTAATGCCCACCAATCTTTCCCAGCAGCCACTTATTGATCAAGGTTTACTGGAGGATATTGTCCCACCTGGTATGCGCAAATTTTGACTCAACTTATACTACTAGAGGTGCCCTTCAAATCAAAGAACAGTCTGGACATCATGGTTATTCATTACTATATAGCAACAAGAACAAGGAAATACATATATATATATATATATGGGCGAGAGCAAGGAAAGAATGCATGATGAGTCTTTTTATTGCTTATGGGACTTCATGGCCTTTTTTTTTTGTAGATATGGTAAACTGTAAAAGGGGATCGAATCAAATCCATTTGAGGTTTGATTGATATTCATTCTCTACATATTACTGTTAGAAATGTTCACAGGTGAACTGAGGCTGCAATTGGGCTTATAGATGCAACTTTATACTTGTGTTCCCAATTTCCTCCATCGTTGTAAGAATTTTATGTCATATCTGCAGCACACCCAATTATGTTGAACCCTCTTTCACTTCAACAGGTCATGTATATCTCTTGTCATAACCCATTTTTTTATCTGTCATACTTAAGAACCCTCAGAAGCAGCATTTCAATGTTTCACAGCACCAAATATACTATAGAATATATCT

Ace file of the UniGene sp_v3.0_unigene2640

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	TPA_inf: WRKY transcription factor 29 [Oryza sativa (japonica cultivar-group)] gb\|EAZ02533.1\| hypothetical protein OsI_24642 [Oryza sativa Indica Group]	-	-	3.0e-38	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%
Sma3	WRKY transcription factor, putative	-	-	3.559e-11	-

Source	Gene names
Sma3	At1g29860; At1g69310; At2g44745; At2g46130; At3g01970; At4g18170; At4g39410; At5g13080; At5g46350; C90ERIPDM; F15J5.1; F1C9.25; F28J7.30; GSVIVT00002773001; GSVIVT00003403001; GSVIVT00004133001; GSVIVT00017951001; GSVIVT00018895001; GSVIVT00019365001; GSV

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	regulation of response to nutrient levels	GO:0032107	Biological Process	-
Sma3	regulation of DNA-dependent transcription in response to stress	GO:0043620	Biological Process	-
Sma3		GO:0045449	Biological Process	-
Sma3	lateral root development	GO:0048527	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	DNA-binding WRKY	IPR003657	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Transcription factor, WRKY group IIc	IPR017396	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G69310.1	WRKY57, ATWRKY57 WRKY DNA-binding protein 57 chr1:26056118-26057909 REVERSE LENGTH=287	5.99756e-43	45%
RefSeq	Arabidopsis thaliana	NP_974112.1	putative WRKY transcription factor 57 [Arabidopsis thaliana]	8.00141e-43	45%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZ05

Fln msg: your sequence is longer than subject: 459 - 324

Fln protein: MAGQQKRSESIGQECNMDVVWKLSTGESPSAVIRSKVRNPKEEDVHNNQASTTTSNPNIMNTPSHHGVFGELGWNMDTDFLDRHVQPTSEGGMGSRIGSGLMSTDVDDFAGFESPYMSFTQCLQAGLQMGEADYSALSKSLACGELGDHEQQQQPEFPEYDQEIKVQANCKSQNPSAIQLGPFMAEAQVGSRSGDMSTVPGTPNSSISSSSSEGHELEQSSLVAPSSVTTNSTAAKGQGPADTESQPDLTTAEKPSMEPKKPPRKKGQKRNREPRFAFMTKSDVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNGKCSVKKRVERSSEDPGIVITTYEGQHSHPSPAILRGSAESQSHFSDQRLNSPFTQTPLIRFPPHPMMLSSTNQVPAASPSSTNNFHHLGSIKSCMNPHLLPQSHHGNSQPHPTHLMPTNLSQQPLIDQGLLEDIVPPGMRKF*

Protein Length: 460

Fln nts: CGGCCTCCCACACGCTATTGGGATTGGGATTGTGAGTGTGATCTCTCTGTGTGAGTGCTTCTTCGATTCTGCTCAAGAACTCCATTAAATATATTGATAGCTGGTTCTTGGCATACTTTATTTATTGAGCGGAGTGTTGAGAAGCTCATGGAAAAGGGCTGAATGCAAAAGTCAGATGGCCTAGCAATCTGTCCCTTGGGCTAATCTGTATGGTCATGGACGTTAAAATTCCTCCTTTTCTTTCTTAATCAGGGCTCTGGGCTGCTTCAATTCTTGAAATCAATCACCAGATTGTACTCAGATCAGATCAGATCAGGATCTAATGACAATGAACAGAGATTTCAAGGGTTGAATTTTACAGAGCCGTGTAAGAAAAGACCTGCAAGTGCTCTCTGGATTCTTATTTTATAAATGGTTGTTTTTCTATTTTTTTTCTTAGTCACGTTTGAATGTTTGGGTGCCGTGTGTTTGTCAAATTTGGCGCGCTGTCGGAGCAGAGAAATGCAAAAGATGCGAGTAGCTTTTGCAATTATTGCCGTGTTCAGCACGTAAAGTCGACTTGGAATCCGACAAGGGCGCCTACAATATTATGGTCGACTGAATCTGACAATATTTCATGTGTATTGAGTCTCTGATTCCATTGGCCCTGTATACATGACTTTGATCTTGTACCCGGATTGACTGATTTTGCCCATCCTGGGATTTAATATTTTGATGCTGCATCATGGAATTTGTGGATACTGGATAGATCCCTGCAGGTTCTGTCTGGATTCTGAGAGGTAAGCAGATGTGTATGCTGCTGGTTAGATTTTATTGGTTCAAAGTGGAGTGTAAGACAATAGAGAAGAAAGAAAGGAAGGAAGATACTTTATAGTTTGTAGAAGTTCTTGGGAAAAGTGTGATCCCAAGAAACCACAGGGGGGTAAACGTATCTGACGATGTGTATGGAAAAGCTTCGTTTCTGACTGAAAAGCTTTCTGAAGTCATCTGATAATGGAAAAAGTTCATCTTACAAGTACAGCGCTCAACATGCCTCTTATACCCAACTCAGAATAAGGTGAAACTACTCCATTATCAAATACTGATTTCTATTTGGGATTTTATTATTATTTTTTTGATACAGGCC_-_ATGGCAGGGCAACAGAAGAGAAGCGAGAGCATTGGCCAAGAATGTAATATGGATGTTGTGTGGAAATTAAGTACAGGAGAGAGTCCATCTGCAGTTATCAGGTCCAAGGTTCGAAACCCAAAAGAGGAGGATGTTCATAATAATCAGGCTTCAACGACTACGAGTAATCCTAATATCATGAATACGCCGAGTCATCATGGGGTTTTCGGTGAACTGGGTTGGAACATGGATACTGATTTTCTGGATCGACATGTGCAGCCCACATCAGAAGGCGGCATGGGTTCAAGAATTGGCTCAGGATTGATGAGTACAGATGTGGATGACTTTGCAGGGTTTGAGTCTCCTTACATGAGCTTTACTCAGTGTCTTCAAGCAGGATTGCAGATGGGTGAAGCAGATTATTCTGCCTTATCTAAATCTTTGGCATGTGGAGAATTAGGGGACCATGAGCAGCAGCAGCAGCCTGAGTTTCCTGAATATGATCAAGAAATCAAAGTTCAGGCCAATTGCAAGTCCCAAAACCCTAGTGCCATTCAACTTGGTCCATTTATGGCAGAAGCTCAAGTAGGAAGTCGATCAGGGGACATGTCAACGGTTCCAGGCACACCAAATTCATCAATATCTTCTTCATCCAGCGAGGGGCACGAATTAGAACAGTCGAGCCTCGTTGCACCCTCCTCGGTCACCACAAACAGCACTGCAGCGAAAGGACAAGGGCCTGCTGATACTGAGTCTCAACCAGACCTGACTACTGCCGAGAAGCCTTCAATGGAGCCCAAGAAACCGCCAAGAAAGAAAGGTCAGAAACGAAACAGGGAGCCCAGATTTGCATTCATGACCAAAAGTGATGTGGATCATTTGGAAGATGGCTATAGATGGCGCAAATATGGCCAAAAGGCTGTCAAAAACAGCCCTTTCCCCAGGAGTTACTATCGTTGCACAAATGGAAAATGCTCAGTGAAGAAGAGAGTGGAGCGTTCGTCAGAAGATCCAGGAATTGTGATTACGACATATGAAGGACAACATTCTCATCCAAGCCCGGCCATATTGCGTGGGTCAGCAGAATCCCAATCCCACTTTTCAGATCAAAGATTGAATTCTCCCTTCACTCAAACGCCATTGATCAGATTCCCTCCCCACCCAATGATGTTGAGTAGTACTAACCAGGTCCCAGCTGCTTCCCCTTCCTCTACTAATAATTTTCACCACCTTGGGTCCATCAAGTCCTGCATGAACCCTCATCTTCTCCCTCAGTCCCACCATGGTAATTCCCAGCCTCACCCAACTCATCTAATGCCCACCAATCTTTCCCAGCAGCCACTTATTGATCAAGGTTTACTGGAGGATATTGTCCCACCTGGTATGCGCAAATTTTGA___CTCAACTTATACTACTAGAGGTGCCCTTCAAATCAAAGAACAGTCTGGACATCATGGTTATTCATTACTATATAGCAACAAGAACAAGGAAATACATATATATATATATATATGGGCGAGAGCAAGGAAAGAATGCATGATGAGTCTTTTTATTGCTTATGGGACTTCATGGCCTTTTTTTTTTGTAGATATGGTAAACTGTAAAAGGGGATCGAATCAAATCCATTTGAGGTTTGATTGATATTCATTCTCTACATATTACTGTTAGAAATGTTCACAGGTGAACTGAGGCTGCAATTGGGCTTATAGATGCAACTTTATACTTGTGTTCCCAATTTCCTCCATCGTTGTAAGAATTTTATGTCATATCTGCAGCACACCCAATTATGTTGAACCCTCTTTCACTTCAACAGGTCATGTATATCTCTTGTCATAACCCATTTTTTTATCTGTCATACTTAAGAACCCTCAGAAGCAGCATTTCAATGTTTCACAGCACCAAATATACTATAGAATATATCT

Fln Alignment:

Contig2640___PRFAFMTKSDVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNGKCSVKKRVERSSEDPGIVITTYEGQHSHPSPAILRGSAESQSHFSDQ
A9NZ05______________PRYAFQTRSQVDILDDGYRWRKYGQKSVKNNLYPRSYYRCTHQTCSVKKQVQRLSRDPEIVVTTYEGIHMHPS----EKSMESFDHILNQ

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
650	25			75	0.996473
653	75		25		0.996473
654		75		25	0.996473
688	16			83	0.994512
828	80		20		0.995493
2142	85		14		0.993533
2143			14	85	0.993533
2219	83		16		0.994512
2408		87	12		0.992554
2447	88			11	0.999937
2449	5	83		11	0.999887
2677	60		40		1.0
2681		20	20	40	0.994159
2682		75		25	0.996473

SSRs (tot: 3)

Start position	End position	Sequence	Length
298	316	TCAGA TCAGA TCAGA TCAG	19
1575	1589	AGC AGC AGC AGC AGC	15
2599	2616	AT AT AT AT AT AT AT AT AT	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain