SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2639

Length: 1416 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene2639

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SET domain protein [Triticum aestivum]	-	-	0.0	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	44%
Sma3	SET domain protein	-	-	3.923e-08	-

Source	ECs	Term	Type	e value	Identity
Sma3	Histone-lysine N-methyltransferase.	EC:2.1.1.43	-	1.085e-07	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Lysine degradation	00310		1.085e-07	%

Source	Gene names
Sma3	AT4G13460; At4g13460; GSVIVT00023351001; GSVIVT00033960001; LOC_Os11g03700; LOC_Os11g38900; OSJNBa0088I06.5; OSJNBb0095H08.7; Os01g0811300; Os05g0490700; Os07g0435900; Os11g0602200; OsI_04165; OsI_20427; OsI_25806; OsI_29152; OsI_34964; OsI_36654; OsI_373

Source	GOs	Term	Type	Identity
Sma3	chromosome, centromeric region	GO:0000775	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	histone-lysine N-methyltransferase activity	GO:0018024	Molecular Function	-
Sma3	DNA mediated transformation	GO:0009294	Biological Process	-
Sma3	chromatin modification	GO:0016568	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	SET domain	IPR001214	-	-
Sma3	SRA-YDG	IPR003105	-	-
Sma3	Pre-SET zinc-binding sub-group	IPR003606	-	-
Sma3	Post-SET domain	IPR003616	-	-
Sma3	Pre-SET domain	IPR007728	-	-
Sma3	Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain	IPR012001	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G13460.1	SDG22, SUVH9, SET22 SU(VAR)3-9 homolog 9 chr4:7824653-7826605 REVERSE LENGTH=650	0.0	45%
RefSeq	Arabidopsis thaliana	NP_193082.1	putative histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH9 [Arabidopsis thaliana]	0.0	45%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AA49

Fln msg: your sequence is shorter than subject: 279 - 332

Fln protein: LSNNVDNEKGPPHFEYTSKPLRYQNPLVQLDSSEGCMCVGGCGLIYCSCAQRNGKQIPYNSNGILIKGKSLIYECNEQCRCPPSCRNRVTQRGLNVHLEVFRTSDKKWGVRSWDPLAAGTFISEYTGQVFPIEEQAAICNSDSEYALNLKHAQKGTKWGSVSDILCEQQQREEGSNPAFPPLNFLIDANKFGNVSRFIKHSSCPNLLMQFVVHDHLDIRFPHVMLFARDNIPPLTELTFDYGSVPASYSEESGENKVLAKVEPVLEYNQSAIDYKHVD*

Protein Length: 280

Fln nts: TCTTTCTAACAATGTAGACAATGAAAAAGGGCCACCCCATTTTGAGTATACCAGTAAACCACTTCGGTACCAGAATCCTCTAGTGCAGCTGGACTCTTCCGAGGGGTGCATGTGTGTAGGTGGGTGTGGTCTAATTTATTGCTCGTGTGCGCAGAGAAATGGCAAGCAAATACCATACAATTCAAATGGTATTCTTATAAAGGGGAAATCATTAATCTATGAATGCAATGAGCAGTGTAGGTGTCCTCCGAGCTGCCGGAATAGAGTAACTCAAAGAGGTTTGAATGTCCATTTAGAGGTCTTCCGAACCAGTGATAAGAAATGGGGTGTAAGGTCTTGGGATCCACTTGCAGCTGGCACCTTTATTTCAGAATATACAGGGCAGGTGTTCCCCATTGAAGAACAGGCAGCTATTTGTAACAGTGACAGTGAATATGCCCTTAATCTGAAGCATGCACAAAAAGGTACAAAATGGGGGAGTGTTTCTGATATCTTGTGCGAGCAGCAGCAGCGGGAAGAGGGTTCCAATCCAGCTTTCCCACCATTAAACTTTCTAATAGATGCTAACAAATTTGGGAACGTTTCACGCTTCATAAAGCACAGTTCCTGTCCTAATCTTCTTATGCAATTTGTTGTACATGATCACCTTGACATCAGGTTCCCTCATGTTATGCTCTTTGCAAGGGATAATATCCCACCTTTAACAGAGCTTACATTTGACTATGGATCTGTTCCTGCTTCATACAGTGAGGAAAGTGGAGAGAACAAGGTGCTGGCAAAGGTGGAACCAGTGCTTGAATATAACCAAAGTGCCATAGATTACAAACATGTTGACTGA___ATGGGGAATTAGGGGGTTCGGTCCTTACTCTCAGTATATTTTGTCATATAATACCGTTTTCTATGTACGTATAGCCTGATTCTTTTAGGCGGTTTTTGAGCAACACAAATGGTTTTTTTGAGCCTTTGATACGGTTTTGCAGTTGTATAATTACACAACATGAGAATCTGGAAGGCAACCAAATTATACATACAATTTCAGCAGAGGTATAGGAGAAAGGAGAGTTGCAGTCTAGCCCTTGCAAGTATAAATCAACGAGGGAATTTTATTGCCCCTGTTGCCCAGGGCAACCTTATGTCTCCATTTTGCTTTTTGTAAAATTCGGCTTCTGCAAGAAGCTATTACGTTTTCTCTATTTTGAGGTCTGTATATCTTGCATTTCTACATATTATAAAGATACAGAAGCTTTTCTTTGTTGCGAGGTGCTTAAATCTTGAACAATTTTGAGGAGTTGAGTTATATATAATTGGTCAGGAGGTTTTTTCACCCTTCAAATGCTTGCGAATTACTCTTAACATTGTTCAAGAGGAAGAGAAAATCAACACTCAAGAGGAAGCTCAGACTGAAGGGCAGCTTCT

Fln Alignment:

Contig2639___GKSLIYECNEQCRCPPSCRNRVTQRGLNVHLEVFRTSDKKWGVRSWDPLAAGTFISEYTGQVFPIEE
D5AA49______________GPPLVMECGPACRCGSSCRNRVSQRGLAVRVAVVRHPRKGWSLHSLEPITRGAFVCEYAGELLTTVE

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
721		80		20	0.995493
768	80		20		0.995493
828	25			75	0.996473
894	25		75		0.996473
911	50		50		1.0
936			75	25	0.996473
1033	66		33		0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
501	512	AGC AGC AGC AGC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain