SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2626

Length: 1508 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene2626

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ebs-bah-phd domain-containing protein n=7 Tax=Magnoliophyta RepID=B9IAJ0_POPTR	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Bromo adjacent homology (BAH) domain	IPR001025	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G22140.1	EBS PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein chr4:11728556-11730230 REVERSE LENGTH=234	76%
RefSeq	Arabidopsis thaliana	NP_001031695.1	PHD finger and bromo-adjacent homology domain-containing protein [Arabidopsis thaliana]	76%
RefSeq	Populus trichocarpa	XP_002321145.1	ebs-bah-phd domain-containing protein [Populus trichocarpa]	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKF8

Fln msg:

Fln protein: MAKTRPAKKSLDAYTIKGTNKVVRAGDCVLMRPSDSDKPPYVARVEKIESDIRNNVKVKVRWYYRPEESIGGRRQFHGAKELFLSDHFDVQSADTIEGKCTVHSFKNYTKLESVGADDYFCRFEYKSATGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPACMNMTPEQAKKVDHFFCPSCSSEDEDKKTRNSHVASPLAEAKLESKRRKR*

Protein Length: 218

Fln nts: CTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGCGCAGGCTAGGGTTGGAAGAGAGGAGCAGCAGAAGAAGCAGCTAGGGTTTTACAAAGCAACTGGGGTTTTACAGAGGAATATTGGTAGACAGTGATCGTGGTAGTAGAAGTAGCAGGAGCGAGAGTAAT_-_ATGGCTAAGACGCGGCCTGCTAAAAAATCCTTGGATGCATATACCATCAAGGGAACCAACAAAGTCGTCAGAGCGGGAGATTGCGTGTTGATGCGCCCGTCGGATTCCGATAAGCCTCCGTATGTAGCTCGAGTAGAGAAAATCGAAAGCGATATCCGGAATAACGTGAAAGTTAAGGTTCGTTGGTATTACAGGCCCGAGGAATCGATCGGTGGGCGGAGGCAGTTCCATGGTGCCAAGGAGCTCTTCCTTTCCGACCACTTTGATGTGCAGAGTGCTGACACAATCGAGGGCAAATGTACAGTTCACAGCTTCAAGAACTACACCAAGCTCGAGAGTGTTGGTGCCGATGATTATTTCTGCCGGTTTGAGTACAAATCTGCTACCGGTGGTTTCACCCCAGACAGAGTGGCAGTGTACTGTAAATGCGAGATGCCCTACAATCCTGATGACCTAATGGTGCAGTGCGAAGGATGCAAAGACTGGTTTCACCCTGCATGTATGAATATGACTCCAGAACAAGCAAAGAAAGTGGATCACTTTTTCTGTCCTAGTTGTTCCTCTGAAGATGAGGACAAAAAGACTCGAAATTCTCATGTTGCTTCACCACTGGCAGAGGCAAAGCTGGAATCCAAACGGCGAAAGAGGTGA___CTGTATTGGTAGTTCAGTTTTCATTTTAGACTGTAACAAAGCAGAACTTTCTTGGGAAGGTGAAATGATTCAACAAGTGTGCAGGGAAATATGTATTAAATCAAGGATATTTATAGGCATATTTCAGTCTCCATGTTGAGGGTTCATTGTACAGTTTAATATGTTAATCTATGGTATGAGCCTCTAATTCAAATTTGAGCTGGCTGGGTAAGATGCATATTATGCTTTCTACATAAATGCTCAAGTGAAACATATTTTGTGTGTGCACTGTGTGGAGTCTTTCAGTTCAGGGTCATATTGCTAAGAGTCGATGGGGAAGTATTGTCATTTTCCGAACAAGTTTCATTTAGGGGACAATAACATCTTCTACTGTACTATGTGTATTTTCAACTCAGATTTTGTGAACTAGGTTTGAACGTCTTATATTTTGTTTTACAATGGTCATGGCCTTTAAGTTATGTCGGATAGTTGTACAAGTTTGGTTGAAAACTTGAAACAACTAGAAATTTGAATTATTGCCATTGAATTTGACAATGATGAAATGTGATGATGTATTAATGGCTATATGTGTAAGAGGTCGATATTTTGATTGCTAAAAGCTGCAAATTCCTTTAAAGGTTATTTTCACTTCCTTTGGAGCATGAAAAATATGTAATTGGAATGCAATTCATCTATGCCTGCAACGCTATAGTAG

Fln Alignment:

Contig2626___MAKTRPAKKSLDAYTIKGTNKVVRAGDCVLMRPSDSDKPPYVARVEKIESDIRNNVKVKVRWYYRPEESIGGRRQFHGAKELFLSDHFDVQSADTIEGKCTVHSFKNYTKLESVGADDYFCRFEYKSATGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPACMNMTPEQAKKVDHFFCPSCSSEDEDKKTRNSHVASPLAEAKLESKRRKR
A9NKF8______________MAKTRPAKKSLDSYTIKGTNKVVRAGDCVLMRPSDSDKPPYVARVEKIESDIRNNVKVKVRWYYRPEESIGGRRQFHGAKELFLSDHFDVQSADTIEGKCTVHSFKNYTKLESVGADDYFCRFEYKSATGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPACMNMTPEQAKKVDHFFCPSCSSEDEDKKTRNSHVASPLAEAKLESKRRKR

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
35		66	33		0.997452
37		66	33		0.997452
103			25	75	0.996473
121	25		75		0.996473
1049	77		22		0.999999
1085	11			88	0.923564
1141		11		88	0.923564
1150	22		77		0.999999
1379		20		80	0.999996
1421	75		25		0.996473
1427		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain