SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2614

Length: 2650 nt

UniGene Fasta

>sp_v3.0_unigene2614
ATACCACTGCTTAAGCAGTGGTATCAACGCAGAGTACATGGGGGGACTAGAACGGGCTCAGCGATTTTGTGGAGCTTAACTGTCTCACACCCCGGGACCGTCGAGTGCGAGGTAGGCCGTTTCTGAAAGTTTGCTTACTGAAATTTCTGCCTTCTGGTGATTAAAGGTTTTATTTAAATAGTGATAGTAGCGGCCTATCGTGAGAAGTTTTTGTGAAGCTATAACTCTCTCACAACCCCAGACAATCGAATCCGAGGCGTAGGATTGTAGTATCTTCTTTTTGGAGAGACAGCATATAAAATGGCCGCTGCTGCAGCTCAGCACTTTGTAGCCTGCCAGTCTCGCATTACTAATTCTGCCAGAAGTCGTTCTTCGGAGACTGCATTGCCCTCAAAGAATAGAGGGAGCAGTAATGCTGCCAGCTCACTAGGCCAAATTGCCTACTACCAGGGCCTGCGGTCGATTAGAAGCAGAGACTTGGGACAGCTTCAGAGCCATGCAGAGGCAAATTTTAAGCAAGTGTTGAGGAAGGCACTTAGTGGTGGTTCCAAGGGTCCCAAGGGAGTGGTCACTTGTAGCAGTGGGATGAATCTGGTTTTTGTATCAGCTGAAGTGGCCCCCTGGAGTAAAACTGGAGGTCTTGGTGATGTTCTAGGAGGATTGCCACCTGCGCTGGCTGCACGTGGTCATCGGGTTATGACAGTATCCCCACGTTATGATCAGTATAAGGACTCATGGGATACCAACGTAGTGGTTGATGTAAAAGTAGGTGATAGAATTGAAACTGTGCGATTCTTCCATGTTTACAAGAGGGGAGTAGATCGTGTTTTTGTGGATCACCCATCCTTCCTTGAAAAGGTTTGGGGGAAAACAGGCGGAAAGATTTATGGTCCTCAAACTGGGGTGGACTACCAAGACAATGAACTTCGTTTTAGCCTCCTATGTCAGGCAGCTATTGAAGCTCCAAGGATTCTTAATCTCTCAAGCAGTGAACACTTTAGTGGACCTTATGGGGAGGATGTTGTCTTCATTGCCAATGATTGGCATACATCTCTTCTTCCTTGTTACTTGAAGAGTATCTACAAGCCTGCCGGTTCTTTCACAAATGCCAAGGTTGCATATTGCATACACAATATAGCCTATCAAGGGAGATTTGCTTTCTCAGACTTCTCTCTTCTTAATCTTCCCGATTCGTTCAAGAGCTCATTTGATTTCATAGATGGGTATGCCAAACCAGTGAAGGGAAGAAAAATAAATTGGATGAAAGCTGGAATACTAGAATCTGATAGGGTTTTTACAGTGAGTCCATATTATGCAAAGGAGCTTATAACTGGACCGGACAAGGGAGTTGAATTGGAATCTATTGTTCGCAAAGTTGGCATTACAGGGATTGTGAATGGAATGGATATCCAAGAATGGGACCCTTCAACGGACAAATATCTCGAAGTGAACTATGATGCAACGACTGTTGTAGATGCCAAGCCTAGTCTGAAGGAAGCTCTACAAGCTGAAGTTGGGCTGACCGTGGATCCAGATATTCCTGTTATAGGATTTATTGGAAGACTTGAAGAGCAGAAAGGTCCAGATATTCTTGCTGAAGCTGTCCCTCTAATTGCAGATGAAAACGTGCAGTTAATTATCCTAGGGACCGGTAAAAAGTACTTGGAGAAGCAGCTTGAAGAGCTTGAAGAGAAATATCCAGACAACGTCAGGGGAGTAGCAAAGTTTAACGTGCCACTTGCTCATATGATAACAGCTGGAGCTGATTTCATGTTGATTCCTAGCAGATTTGAGCCATGCGGTCTCATCCAGTTACACGCCATGCGCTATGGCACGGTACCTATAGTTTCATCTACAGGTGGATTAGTGGATACAGTGCAAGAGGGAATAACAGGGTTCCAGATGGGTGATTTTCATGTTGACTGCGAAGAAGTAGATCCTGATGATGTAGCTGCTATTGCGACAACCGTGAAAAGAGCTCTAAAAATGTATGGGACACCTGCTTTCACGACTATGGTGCAGAATTGCATGGGCCAAGATTTTTCATGGAAGGGCCCCTCGCGGGAATGGGAGCAAGTTTTGCTGAGTCTGCAAGTTGCAGGGAGTGAACCTGGCGAAGAGGGAGATGAAATTGCTCCTTTGGCAAAAGAAAATGTGGCCACCCCTTGAGAATTTCTCGCTGAATGTGTAGATATGAAATAATAAACTCGTCTACTTATCCAATTTCTTTTGTAAACATCCAAAAAAATGCATGGGAAGAAATGCAAGTCTTTTGTACCCCTTTTTAAGTTTACCTTTGATTCAAAGCTATATAATCGACTACTAGCTCAGCTCTTTGTTGGAAGGGTCAGGCTGAATTTCTGCGAAGTAAATGGTATCCGACATATATAAATAGGATGTACGTCATAATTACATACTTTCTTGTGCCTTAGAAGGCAGTTTCATCAGTTATGAGTTTGCGTTTCATCACCTGTAAAAATGGCATGATTCTAAGAAAATTACGTTGGATGTATTTATCCAGATCAATGTTTCCTTTTAAGCCCTAAAGTTATAGCATCTCGCTTTCCTATTGAAGACAGCAAGATCACTATGGAGAAATTGTTCTCGTTGTTTGAAGCCTCAATTTAGTCACATCATGCGACGTTTTTTC

Ace file of the UniGene sp_v3.0_unigene2614

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Granule-bound starch synthase 1 n=14 Tax=Malvoideae RepID=C8YQU9_GOSHI	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Sma3	Putative uncharacterized protein	-	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G32900.1	UDP-Glycosyltransferase superfamily protein chr1:11920582-11923506 REVERSE LENGTH=610	71%
RefSeq	Arabidopsis thaliana	NP_174566.1	granule-bound starch synthase [Arabidopsis thaliana]	71%
RefSeq	Populus trichocarpa	XP_002300507.1	predicted protein [Populus trichocarpa]	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PTH1

Fln msg:

Fln protein: MAAAAAQHFVACQSRITNSARSRSSETALPSKNRGSSNAASSLGQIAYYQGLRSIRSRDLGQLQSHAEANFKQVLRKALSGGSKGPKGVVTCSSGMNLVFVSAEVAPWSKTGGLGDVLGGLPPALAARGHRVMTVSPRYDQYKDSWDTNVVVDVKVGDRIETVRFFHVYKRGVDRVFVDHPSFLEKVWGKTGGKIYGPQTGVDYQDNELRFSLLCQAAIEAPRILNLSSSEHFSGPYGEDVVFIANDWHTSLLPCYLKSIYKPAGSFTNAKVAYCIHNIAYQGRFAFSDFSLLNLPDSFKSSFDFIDGYAKPVKGRKINWMKAGILESDRVFTVSPYYAKELITGPDKGVELESIVRKVGITGIVNGMDIQEWDPSTDKYLEVNYDATTVVDAKPSLKEALQAEVGLTVDPDIPVIGFIGRLEEQKGPDILAEAVPLIADENVQLIILGTGKKYLEKQLEELEEKYPDNVRGVAKFNVPLAHMITAGADFMLIPSRFEPCGLIQLHAMRYGTVPIVSSTGGLVDTVQEGITGFQMGDFHVDCEEVDPDDVAAIATTVKRALKMYGTPAFTTMVQNCMGQDFSWKGPSREWEQVLLSLQVAGSEPGEEGDEIAPLAKENVATP*

Protein Length: 624

Fln nts: ATACCACTGCTTAAGCAGTGGTATCAACGCAGAGTACATGGGGGGACTAGAACGGGCTCAGCGATTTTGTGGAGCTTAACTGTCTCACACCCCGGGACCGTCGAGTGCGAGGTAGGCCGTTTCTGAAAGTTTGCTTACTGAAATTTCTGCCTTCTGGTGATTAAAGGTTTTATTTAAATAGTGATAGTAGCGGCCTATCGTGAGAAGTTTTTGTGAAGCTATAACTCTCTCACAACCCCAGACAATCGAATCCGAGGCGTAGGATTGTAGTATCTTCTTTTTGGAGAGACAGCATATAAA_-_ATGGCCGCTGCTGCAGCTCAGCACTTTGTAGCCTGCCAGTCTCGCATTACTAATTCTGCCAGAAGTCGTTCTTCGGAGACTGCATTGCCCTCAAAGAATAGAGGGAGCAGTAATGCTGCCAGCTCACTAGGCCAAATTGCCTACTACCAGGGCCTGCGGTCGATTAGAAGCAGAGACTTGGGACAGCTTCAGAGCCATGCAGAGGCAAATTTTAAGCAAGTGTTGAGGAAGGCACTTAGTGGTGGTTCCAAGGGTCCCAAGGGAGTGGTCACTTGTAGCAGTGGGATGAATCTGGTTTTTGTATCAGCTGAAGTGGCCCCCTGGAGTAAAACTGGAGGTCTTGGTGATGTTCTAGGAGGATTGCCACCTGCGCTGGCTGCACGTGGTCATCGGGTTATGACAGTATCCCCACGTTATGATCAGTATAAGGACTCATGGGATACCAACGTAGTGGTTGATGTAAAAGTAGGTGATAGAATTGAAACTGTGCGATTCTTCCATGTTTACAAGAGGGGAGTAGATCGTGTTTTTGTGGATCACCCATCCTTCCTTGAAAAGGTTTGGGGGAAAACAGGCGGAAAGATTTATGGTCCTCAAACTGGGGTGGACTACCAAGACAATGAACTTCGTTTTAGCCTCCTATGTCAGGCAGCTATTGAAGCTCCAAGGATTCTTAATCTCTCAAGCAGTGAACACTTTAGTGGACCTTATGGGGAGGATGTTGTCTTCATTGCCAATGATTGGCATACATCTCTTCTTCCTTGTTACTTGAAGAGTATCTACAAGCCTGCCGGTTCTTTCACAAATGCCAAGGTTGCATATTGCATACACAATATAGCCTATCAAGGGAGATTTGCTTTCTCAGACTTCTCTCTTCTTAATCTTCCCGATTCGTTCAAGAGCTCATTTGATTTCATAGATGGGTATGCCAAACCAGTGAAGGGAAGAAAAATAAATTGGATGAAAGCTGGAATACTAGAATCTGATAGGGTTTTTACAGTGAGTCCATATTATGCAAAGGAGCTTATAACTGGACCGGACAAGGGAGTTGAATTGGAATCTATTGTTCGCAAAGTTGGCATTACAGGGATTGTGAATGGAATGGATATCCAAGAATGGGACCCTTCAACGGACAAATATCTCGAAGTGAACTATGATGCAACGACTGTTGTAGATGCCAAGCCTAGTCTGAAGGAAGCTCTACAAGCTGAAGTTGGGCTGACCGTGGATCCAGATATTCCTGTTATAGGATTTATTGGAAGACTTGAAGAGCAGAAAGGTCCAGATATTCTTGCTGAAGCTGTCCCTCTAATTGCAGATGAAAACGTGCAGTTAATTATCCTAGGGACCGGTAAAAAGTACTTGGAGAAGCAGCTTGAAGAGCTTGAAGAGAAATATCCAGACAACGTCAGGGGAGTAGCAAAGTTTAACGTGCCACTTGCTCATATGATAACAGCTGGAGCTGATTTCATGTTGATTCCTAGCAGATTTGAGCCATGCGGTCTCATCCAGTTACACGCCATGCGCTATGGCACGGTACCTATAGTTTCATCTACAGGTGGATTAGTGGATACAGTGCAAGAGGGAATAACAGGGTTCCAGATGGGTGATTTTCATGTTGACTGCGAAGAAGTAGATCCTGATGATGTAGCTGCTATTGCGACAACCGTGAAAAGAGCTCTAAAAATGTATGGGACACCTGCTTTCACGACTATGGTGCAGAATTGCATGGGCCAAGATTTTTCATGGAAGGGCCCCTCGCGGGAATGGGAGCAAGTTTTGCTGAGTCTGCAAGTTGCAGGGAGTGAACCTGGCGAAGAGGGAGATGAAATTGCTCCTTTGGCAAAAGAAAATGTGGCCACCCCTTGA___GAATTTCTCGCTGAATGTGTAGATATGAAATAATAAACTCGTCTACTTATCCAATTTCTTTTGTAAACATCCAAAAAAATGCATGGGAAGAAATGCAAGTCTTTTGTACCCCTTTTTAAGTTTACCTTTGATTCAAAGCTATATAATCGACTACTAGCTCAGCTCTTTGTTGGAAGGGTCAGGCTGAATTTCTGCGAAGTAAATGGTATCCGACATATATAAATAGGATGTACGTCATAATTACATACTTTCTTGTGCCTTAGAAGGCAGTTTCATCAGTTATGAGTTTGCGTTTCATCACCTGTAAAAATGGCATGATTCTAAGAAAATTACGTTGGATGTATTTATCCAGATCAATGTTTCCTTTTAAGCCCTAAAGTTATAGCATCTCGCTTTCCTATTGAAGACAGCAAGATCACTATGGAGAAATTGTTCTCGTTGTTTGAAGCCTCAATTTAGTCACATCATGCGACGTTTTTTC

Fln Alignment:

Contig2614___QHFVACQSRITNSARSRSSETALPSKNRGSSNAASSLGQIAYYQGLRSIRSRDLGQLQSHAEANFKQVLRKALSGGSKGPKGVVTCSSGMNLVFVSAEVAPWSKTXXXXXXXXXXXXXXXXXXHRVMTVSPRYDQYKDSWDTNVVVDVKVGDRIETVRFFHVYKRGVDRVFVDHPSFLEKVWGKTGGKIYGPQTGVDYQDNELRFSLLCQAAIEAPRILNLSSSEHFSGPYGEDVVFIANDWHTSLLPCYLKSIYKPAGSFTNAKVAYCIHNIAYQGRFAFSDFSLLNLPDSFKSSFDFIDGYAKPVKGRKINWMKAGILESDRVFTVSPYYAKELITGPDKGVELESIVRKVGITGIVNGMDIQEWDPSTDKYLEVNYDATTVVDAKPSLKEALQAEVGLTVDPDIPVIGFIGRLEEQKGPDILAEAVPLIADENVQLIILGTGXXXXXXXXXXXXXXXPDNVRGVAKFNVPLAHMITAGADFMLIPSRFEPCGLIQLHAMRYGTVPIVSSTGGLVDTVQEGITGFQMGDFHVDCEEVDPDDVAAIATTVKRALKMYGTPAFTTMVQNCMGQDFSWKGPSREWEQVLLSLQVAGSEPGEEGDEIAPLAKENVATP
C0PTH1______________QHFVACQPGIANSARSPSSGTALPSKNRGSSNATCSPGQIAYYQGLRSTRSTNLGQLQSHAEANFKQVLRKALSVGPKGPKGVVTCSGGMNLVFVSAEVAPWSKTGGLGDVLGGLPPALAARGHRVMTVSPRYDQYKDSWDTGVSIDIKVGDKTESVRFFHIYKRGVDRIFVDHPWFLEKVWGKTGGKIYGPETGVDYKDNELRFSLLCQAAIEAPRILNLSSSEHFSGPYGEDVVFIANDWHTALLPCYLKSIYKPAGSFTNAKVAYCIHNIAYQGRFSFSDFSLLNLPDEFKSSFDFIDGYAKPVKGRKINWMKAGILESDRVFTVSPYYAKELVSGEDKGVELESIVRKVGITGIVNGMDIQEWDPSTDKYLEVNYDATTVLDAKPSLKETLQAEVGLAVDPDIPVIGFIGRLEEQKGSDILAEAIPLIADENVQLIILGTGKKYLEKQLEEIEEKYPDKVRAVAKFNVPLAHMITAGADFMLVPSRFEPCGLIQLHAMRYGTVPIVSSTGGLVDTVQEGKTGFQMGDFHVDCEEVDPDDVTALATTVKRALEVYGTPAYATIVQNCMDQDFSWKGPARQWENVLLSLQVAGGEPGEEGDEIAPLAKENVATP

SNPs (tot: 54)

Position	A %	C %	G %	T %	Probability
211	10			90	0.90298
213		70	30		1.0
214			30	70	1.0
215			30	70	1.0
223	70		30		1.0
256		84		15	1.0
305	33		66		1.0
375	69		30		1.0
514	40		60		1.0
689	11	88			0.923564
690	11		88		0.923564
691			88	11	0.923564
777		11		88	0.923564
787		11	88		0.923564
788		88		11	0.923564
791			11	88	0.923564
792	11			88	0.923564
795		11	11	77	0.968132
799	11			88	0.923564
802			11	88	0.923564
803		11		88	0.923564
816		10		90	0.90298
817	90	10			0.90298
818			90	10	0.90298
819	90	10			0.90298
820			10	90	0.90298
823			10	90	0.90298
825	12			87	0.992554
826	12			87	0.992554
828	12			87	0.992554
829		14	14	71	0.984337
830	14		71	14	0.984337
832	14		71	14	0.984337
1855	40			60	1.0
1921		40		60	1.0
1948	40	60			1.0
2008	60		40		1.0
2033		40	60		1.0
2056		40	60		1.0
2063		60	40		1.0
2065	40		60		1.0
2089	94		5		0.998397
2202	10		90		0.999898
2260	87			12	0.992554
2287		14	85		0.993533
2313	78		21		1.0
2321		78	21		1.0
2350			85	15	1.0
2392	93	6			0.999998
2397	4		95		0.994598
2403		93	6		0.999998
2449	95		4		0.996252
2473	89		2	2	0.97549
2619		8		92	0.999718

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain