SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2611

Length: 3548 nt

UniGene Fasta

>sp_v3.0_unigene2611
GGATGTGCGGATTTGCAAACTCCTCGCACTCGTCGACCGCAAAACCTACCATTCGTATAGGAGAAGGGTAGAGATCCCTAATGGGGAGCTTCAGCGAGGATATCAGCCTGCCACGTTTGTGAGAGCAGCATAAAATATCAGTCAATGGACATTACACGCGTGCGTAGATCTGATTCTTAATATATAATTAGTGTTCATTGGTTTATTAATTGAGATGGGCGAATCCCGGTAGAGTGAGAGTATCATTGGAATCGTGAGCACGAACAGGGCATGTGGAGTGTGGTACTGAGGAAGAAGGGTTTTGGGATGGTTGCTTGGGAGTGGAAGGGTCAACAGTGGGCGAGGCGGTGAATGCTTATGAATTTGCTGTTAAATTTTGATTTCCAAGATTGTCTCTTGTGGGACAGGGTGGAGAGTTGAGAACTGACGCCCGCGCCCCTCGAATTGGTTCCTGATTCGGATCCGACTGTACGTTTTACGCTTCACGAGATTCGAACCTCAGACCTCGGAAGGCTTTTTCACTGGGAGCTGGTTCATTGTTTGTTTCTGAAGCGAGGAAATTTGAAATCTGGAAAAGTCTACAGCAAAGGGACAATGAAATTAAGAGATGCCACCCTGGTTGCTATCGCGGCTTCAATTGGAAACCTGCTGCAAGGATGGGACAACGCTACTATAGCTGGAGCCGTGCTTTACATCAAAAAAGAATTTGACTTGGAAGACAAACCAACTCTTGAAGGCCTTATTGTGGCCATGTCTCTAATCGGGGCAACAATCTTCACCACATTTTGTGGCCCAGTATCGGATTGGCTAGGTCGACGGCTTATGTTAATCATATCATCAATTTTGTATTCGATAAGTTCGTTAGTGATGCTCTGGTCTCCAAATGTTTATATATTGCTTCTGGCCCGTCTGCTGGATGGCTTTGGAATCGGATTAGCTATTACTCTTGTGCCAGCTTATATATCCGAGATTGCACCATCAGAAATACGTGGACAGCTGAACACTCTACCTCAGTTCTCTGGTTCTTTTGGGATGTTCCTTGCATACTGTATGGTTTTTGGAATGTCATTGGAAACAAGTCCCAATTGGAGGCTGATGTTGGCTGTGTTGTTCATTCCATCTATCTTTTATGTGTTTTTGACCATTTTTTACCTGCCGGAATCTCCGAGGTGGCTTGTGAGTAAAGGGCGAATGCGTGAGGCAAAGCAGGTTCTACAACAATTGCGAGGCAGGGAGGATGTATCAGGTGAAATGGCACTTCTAGTTGAAGGTTTGGGAGTAGGAGGTGACACATCTATTGAAGAATACATACTTCAGCCTGCTGAAGATCTGGGGGATGAGCACGAACCTGTTTCAGATTATGGTCAAATCAAATTATATAGGCCAGAAGAGGGTCTTTCTTGGATTGCCAAACCAATCACAAGTGCTACTGGAACCCAGGGGTTCCTCTCTAGGCATGGCAGTGTGGAGACCCAAAGTGTACCGCTTATGGATCCTATGGTCACACTCTTTGGGAGTCTTCACAGTGTCACAAATCTACCAGAAGCTGGCAGCATGCGCAGCACTATCTTTCCTGAATTGGGGAGCATGTATAATGTACCAGAACGGCAAGATGATGGAAAGAATGATCAATGGGACATAGAAAGTGTCCAAAGAGGTAATGCAGGTGATGGGTATGGTTCAGATGATGCTGCAGGCGATCTTGAGGAAAATCTCCACAGTCCTCTGCTTTCTAGACACACTAGTGGGAGGTGGGACCAGGCACCACTCTCTCGTGGTAATTCAAAAGATGTGAAGGAGTTGCCACATGCTCATGGTAGTGCATTAAGCATGCATCGTCATGGTAGTGTAGCTGAGTCATTTGGCAGCATGGGTATTGGAGGTGGATGGCAATTGGCTTGGCGCTGGACAGGACCAGAGGGAAGAGAAGCCAGACCCGAGGAGGGAACTTTCAAAAGAATGTATCTACATCAAGAAAGTGGCATCCAATCTCACCGGGCTTCTATGATGTCACTACCAAGTGTACATGGTCCAGGTGAGATGGAACCCATCCAAGCAGCAGCCTTAGTAAGTCAACCGGCATTGTATGGCAAAGAGTTGTTGCAAGAACATCCAGTAGGACCTGCTATGGTACATCCTTCTGAAACGGCCGTGAAAGGCCCTAATTGGACTGATCTGTTTGAAGGAGGAGTTAAGCGTGCTTTGATTGTGGGAATAGGAATCCAAATTCTTGAGCAGTTTGCTGGTATTAATGGAGTCCTATATTATACACCTCAAATTCTTGAAGAGGCAGGTGTAGAGGTTCTTCTGGCGAATATGGGCATAGGGTCGGACTCAGCGTCACTTCTGATCAGTGCATTAACAAGTTTGTTGATGCTTCCATGTATTGGAATTGCCATGTGGCTTATGGATACATCCGGTAGAAGGACACTTTTGCTTACAACTATGCCTTTTTTAATTGCGTCGCTTGTGATTTTGGTGGTGTCAAACTCGATTACAATGGGCACTGTGGTTAAAGCTGCTATATCATGTGTTGGTGTTGTTGCATACATTTGCCTTTTCGTCATGGGCTTTGGACCAATACCAAATATCCTATGCGCAGAGATATTTCCCACCCGTGTTCGGGGTGTCTGTATTGCGATATGTTCCTTGACATTTTGGATTTGCGACATCATCGTAACTTACACTCTTCCTGTATTATTGGATTCAGTGGGTCTTAAAGGTGTATTTGGCATTTATGCAGCAGTCTGCTGCGTTTCTTGGGTGTTTGTGTATCTAAAAGTTCCAGAAACGAAGGGAATGCCACTGGAAGTTATAACAGAGTTCTTTGCAATGTCTGCAGTAAAGAAAGAGCCTGCCAAATTGCCATGAAAATCATCTTGGTGTGTAACCACATATTATGGTGTTAAGTGGCAATTAATGTAGGATGAGATACAGGCAGAGCAGTTGGGGATTGCCGGTTTTATGGATCAAATGCCAATTTTCCAATCATACGTAGGGTTCTAATTCTTTATTCTACCATGTAAACGGAAGGATAATCATCATTTGGTCCTCATTAAAGTAGTATTATTTCTTGCTTGGTTTTCTCCCAGTGGGGCAAAGGGATAAGGAGAGATTGTAACGTATCTGCCATGAAGTTTAAAATTCATTTGATAGCAGGTAAAAGATGCCAAAATTTGATGTCAATCAAGAATCCGGATGTTTGAATGCTTTTGCTAAGGGAGTGCAATGTTTGTAATTGACATCATGCACACTAGTTAAAGAGTTGTGAATTTAGCTCATGCATACTGGTTAAAGAGTTGTGTATATAAGAATGTTTGTTATATCTATGTGACATTTATAGGAATGCTACTCAACAGGTGCATTCCCTGTAGAGAGGTTGAAGCCTTCATTTCTAACTTAAACCTGTTGCTGTACCGGATACTGCTGAGGTTGCCTAGCCACATACGATTGAAGAATTGTGTGAAGTACAAACGAAAATATGATTTTTACAGCACAGACACAAAATAGTAATAATGCCAGACATATTTGGCTAATTTCAATATCCT

Ace file of the UniGene sp_v3.0_unigene2611

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Sugar transporter, putative n=1 Tax=Ricinus communis RepID=B9S3N8_RICCO	-	-	0.0	62%
FL-Next	Isoform 2 of Monosaccharide-sensing protein 2 OS=Arabidopsis thaliana GN=MSSP2	-	-	0.0	65%
Sma3	Putative hexose transporter	-	-	3.498e-10	-

Source	Gene names
Sma3	AT4G35300; At1g20840; At3g51490; At4g35300; F23E12.140; F26O13.130; F2D10.36; F9H16.18; GSVIVT00002919001; GSVIVT00019321001; GSVIVT00036283001; HT6; LOC_Os03g03680; LOC_Os10g13440; LOC_Os10g39440; LOC_Os11g28610; MSSP1; MSSP2; MSSP3; MT1; OJ1149_C12.19;

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type vacuole membrane	GO:0009705	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	sugar:hydrogen symporter activity	GO:0005351	Molecular Function	-
Sma3	substrate-specific transmembrane transporter activity	GO:0022891	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	carbohydrate transport	GO:0008643	Biological Process	-
Sma3	response to nematode	GO:0009624	Biological Process	-
Sma3	transmembrane transport	GO:0055085	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Sugar/inositol transporter	IPR003663	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G35300.1	TMT2 tonoplast monosaccharide transporter2 chr4:16796432-16799071 REVERSE LENGTH=739	65%
RefSeq	Arabidopsis thaliana	NP_849565.1	monosaccharide-sensing protein 2 [Arabidopsis thaliana]	65%
RefSeq	Populus trichocarpa	XP_002328276.1	predicted protein, partial [Populus trichocarpa]	66%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q8LPQ8-2

Fln msg:

Fln protein: MKLRDATLVAIAASIGNLLQGWDNATIAGAVLYIKKEFDLEDKPTLEGLIVAMSLIGATIFTTFCGPVSDWLGRRLMLIISSILYSISSLVMLWSPNVYILLLARLLDGFGIGLAITLVPAYISEIAPSEIRGQLNTLPQFSGSFGMFLAYCMVFGMSLETSPNWRLMLAVLFIPSIFYVFLTIFYLPESPRWLVSKGRMREAKQVLQQLRGREDVSGEMALLVEGLGVGGDTSIEEYILQPAEDLGDEHEPVSDYGQIKLYRPEEGLSWIAKPITSATGTQGFLSRHGSVETQSVPLMDPMVTLFGSLHSVTNLPEAGSMRSTIFPELGSMYNVPERQDDGKNDQWDIESVQRGNAGDGYGSDDAAGDLEENLHSPLLSRHTSGRWDQAPLSRGNSKDVKELPHAHGSALSMHRHGSVAESFGSMGIGGGWQLAWRWTGPEGREARPEEGTFKRMYLHQESGIQSHRASMMSLPSVHGPGEMEPIQAAALVSQPALYGKELLQEHPVGPAMVHPSETAVKGPNWTDLFEGGVKRALIVGIGIQILEQFAGINGVLYYTPQILEEAGVEVLLANMGIGSDSASLLISALTSLLMLPCIGIAMWLMDTSGRRTLLLTTMPFLIASLVILVVSNSITMGTVVKAAISCVGVVAYICLFVMGFGPIPNILCAEIFPTRVRGVCIAICSLTFWICDIIVTYTLPVLLDSVGLKGVFGIYAAVCCVSWVFVYLKVPETKGMPLEVITEFFAMSAVKKEPAKLP*

Protein Length: 760

Fln nts: GGATGTGCGGATTTGCAAACTCCTCGCACTCGTCGACCGCAAAACCTACCATTCGTATAGGAGAAGGGTAGAGATCCCTAATGGGGAGCTTCAGCGAGGATATCAGCCTGCCACGTTTGTGAGAGCAGCATAAAATATCAGTCAATGGACATTACACGCGTGCGTAGATCTGATTCTTAATATATAATTAGTGTTCATTGGTTTATTAATTGAGATGGGCGAATCCCGGTAGAGTGAGAGTATCATTGGAATCGTGAGCACGAACAGGGCATGTGGAGTGTGGTACTGAGGAAGAAGGGTTTTGGGATGGTTGCTTGGGAGTGGAAGGGTCAACAGTGGGCGAGGCGGTGAATGCTTATGAATTTGCTGTTAAATTTTGATTTCCAAGATTGTCTCTTGTGGGACAGGGTGGAGAGTTGAGAACTGACGCCCGCGCCCCTCGAATTGGTTCCTGATTCGGATCCGACTGTACGTTTTACGCTTCACGAGATTCGAACCTCAGACCTCGGAAGGCTTTTTCACTGGGAGCTGGTTCATTGTTTGTTTCTGAAGCGAGGAAATTTGAAATCTGGAAAAGTCTACAGCAAAGGGACA_-_ATGAAATTAAGAGATGCCACCCTGGTTGCTATCGCGGCTTCAATTGGAAACCTGCTGCAAGGATGGGACAACGCTACTATAGCTGGAGCCGTGCTTTACATCAAAAAAGAATTTGACTTGGAAGACAAACCAACTCTTGAAGGCCTTATTGTGGCCATGTCTCTAATCGGGGCAACAATCTTCACCACATTTTGTGGCCCAGTATCGGATTGGCTAGGTCGACGGCTTATGTTAATCATATCATCAATTTTGTATTCGATAAGTTCGTTAGTGATGCTCTGGTCTCCAAATGTTTATATATTGCTTCTGGCCCGTCTGCTGGATGGCTTTGGAATCGGATTAGCTATTACTCTTGTGCCAGCTTATATATCCGAGATTGCACCATCAGAAATACGTGGACAGCTGAACACTCTACCTCAGTTCTCTGGTTCTTTTGGGATGTTCCTTGCATACTGTATGGTTTTTGGAATGTCATTGGAAACAAGTCCCAATTGGAGGCTGATGTTGGCTGTGTTGTTCATTCCATCTATCTTTTATGTGTTTTTGACCATTTTTTACCTGCCGGAATCTCCGAGGTGGCTTGTGAGTAAAGGGCGAATGCGTGAGGCAAAGCAGGTTCTACAACAATTGCGAGGCAGGGAGGATGTATCAGGTGAAATGGCACTTCTAGTTGAAGGTTTGGGAGTAGGAGGTGACACATCTATTGAAGAATACATACTTCAGCCTGCTGAAGATCTGGGGGATGAGCACGAACCTGTTTCAGATTATGGTCAAATCAAATTATATAGGCCAGAAGAGGGTCTTTCTTGGATTGCCAAACCAATCACAAGTGCTACTGGAACCCAGGGGTTCCTCTCTAGGCATGGCAGTGTGGAGACCCAAAGTGTACCGCTTATGGATCCTATGGTCACACTCTTTGGGAGTCTTCACAGTGTCACAAATCTACCAGAAGCTGGCAGCATGCGCAGCACTATCTTTCCTGAATTGGGGAGCATGTATAATGTACCAGAACGGCAAGATGATGGAAAGAATGATCAATGGGACATAGAAAGTGTCCAAAGAGGTAATGCAGGTGATGGGTATGGTTCAGATGATGCTGCAGGCGATCTTGAGGAAAATCTCCACAGTCCTCTGCTTTCTAGACACACTAGTGGGAGGTGGGACCAGGCACCACTCTCTCGTGGTAATTCAAAAGATGTGAAGGAGTTGCCACATGCTCATGGTAGTGCATTAAGCATGCATCGTCATGGTAGTGTAGCTGAGTCATTTGGCAGCATGGGTATTGGAGGTGGATGGCAATTGGCTTGGCGCTGGACAGGACCAGAGGGAAGAGAAGCCAGACCCGAGGAGGGAACTTTCAAAAGAATGTATCTACATCAAGAAAGTGGCATCCAATCTCACCGGGCTTCTATGATGTCACTACCAAGTGTACATGGTCCAGGTGAGATGGAACCCATCCAAGCAGCAGCCTTAGTAAGTCAACCGGCATTGTATGGCAAAGAGTTGTTGCAAGAACATCCAGTAGGACCTGCTATGGTACATCCTTCTGAAACGGCCGTGAAAGGCCCTAATTGGACTGATCTGTTTGAAGGAGGAGTTAAGCGTGCTTTGATTGTGGGAATAGGAATCCAAATTCTTGAGCAGTTTGCTGGTATTAATGGAGTCCTATATTATACACCTCAAATTCTTGAAGAGGCAGGTGTAGAGGTTCTTCTGGCGAATATGGGCATAGGGTCGGACTCAGCGTCACTTCTGATCAGTGCATTAACAAGTTTGTTGATGCTTCCATGTATTGGAATTGCCATGTGGCTTATGGATACATCCGGTAGAAGGACACTTTTGCTTACAACTATGCCTTTTTTAATTGCGTCGCTTGTGATTTTGGTGGTGTCAAACTCGATTACAATGGGCACTGTGGTTAAAGCTGCTATATCATGTGTTGGTGTTGTTGCATACATTTGCCTTTTCGTCATGGGCTTTGGACCAATACCAAATATCCTATGCGCAGAGATATTTCCCACCCGTGTTCGGGGTGTCTGTATTGCGATATGTTCCTTGACATTTTGGATTTGCGACATCATCGTAACTTACACTCTTCCTGTATTATTGGATTCAGTGGGTCTTAAAGGTGTATTTGGCATTTATGCAGCAGTCTGCTGCGTTTCTTGGGTGTTTGTGTATCTAAAAGTTCCAGAAACGAAGGGAATGCCACTGGAAGTTATAACAGAGTTCTTTGCAATGTCTGCAGTAAAGAAAGAGCCTGCCAAATTGCCATGA___AAATCATCTTGGTGTGTAACCACATATTATGGTGTTAAGTGGCAATTAATGTAGGATGAGATACAGGCAGAGCAGTTGGGGATTGCCGGTTTTATGGATCAAATGCCAATTTTCCAATCATACGTAGGGTTCTAATTCTTTATTCTACCATGTAAACGGAAGGATAATCATCATTTGGTCCTCATTAAAGTAGTATTATTTCTTGCTTGGTTTTCTCCCAGTGGGGCAAAGGGATAAGGAGAGATTGTAACGTATCTGCCATGAAGTTTAAAATTCATTTGATAGCAGGTAAAAGATGCCAAAATTTGATGTCAATCAAGAATCCGGATGTTTGAATGCTTTTGCTAAGGGAGTGCAATGTTTGTAATTGACATCATGCACACTAGTTAAAGAGTTGTGAATTTAGCTCATGCATACTGGTTAAAGAGTTGTGTATATAAGAATGTTTGTTATATCTATGTGACATTTATAGGAATGCTACTCAACAGGTGCATTCCCTGTAGAGAGGTTGAAGCCTTCATTTCTAACTTAAACCTGTTGCTGTACCGGATACTGCTGAGGTTGCCTAGCCACATACGATTGAAGAATTGTGTGAAGTACAAACGAAAATATGATTTTTACAGCACAGACACAAAATAGTAATAATGCCAGACATATTTGGCTAATTTCAATATCCT

Fln Alignment:

Contig2611___ATLVAIAASIGNLLQGWDNATIAGAVLYIKKEFDLEDKPTLEGLIVAMSLIGATIFTTFCGPVSDWLGRRXXXXXXXXXXXXXXXXXXWSPNVYILLLARLLDGFGIGLAITLVPAYISEIAPSEIRGQLNTLPQFSGSFGMFLAYCMVFGMSLETSPNWRLMLAVLFIPSIFYVFLTIFYLPESPRWLVSKGRMREAKQVLQQLRGREDVSGEMALLVEGLGVGGDTSIEEYILQPAEDLGDEHEPVSDYGQIKLYRPEEGLSWIAKPITSATGTQGFLSRHGS-VETQSVPLMDPMVTLFGSLHSVTNLPEAGSMRSTIFPELGSMYNVPERQDDGKNDQWDIES-VQRGNXXXXXXXXXXXXXLEENLHSPLLSRHTSGRWDQAPLSRGNSKDVKELPHAHGSALSMHRHGS-----VAESFGSMGIGGGWQLAWRWTXXXXXXXXXXXXTFKRMYLHQESGIQSHRASMMSLPSVHGPGEMEPIQAAALVSQPALYGKELLQEHPVGPAMVHPSETAVKGPNWTDLFEGGVKRALIVGIGIQILEQFAGINGVLYYTPQILEEAGVEVLLANMGIGXXXXXXXXXXXXXXXXXPCIGIAMWLMDTSGRRTLLLTTMPFLIASLVILVVSNSITMGTVVKAAISCVGVVAYICLFVMGFGPIPNILCAEIFPTRVRGVCIAICSLTFWICDIIVTYTLPVLLDSVGLKGVFGIYAAVCCVSWVFVYLKVPETKGMPLEVITEFFAMSAVKKEPAK
Q8LPQ8-2____________AVLVAIAAAVGNLLQGWDNATIAGAVLYIKKEFNLESNPSVEGLIVAMSLIGATLITTCSGGVADWLGRRPMLILSSILYFVGSLVMLWSPNVYVLLLGRLLDGFGVGLVVTLVPIYISETAPPEIRGLLNTLPQFTGSGGMFLSYCMVFGMSLMPSPSWRLMLGVLFIPSLVFFFLTVFFLPESPRWLVSKGRMLEAKRVLQRLRGREDVSGEMALLVEGLGIGGETTIEEYIIGPADEVTDDHDIAVDKDQIKLYGAEEGLSWVARPVKGGS-TMSVLSRHGSTMSRRQGSLIDPLVTLFGSVHE--KMPDTGSMRSALFPHFGSMFSVGGNQP--RHEDWDEENLVGEGEDYPSDHGDDS----EDDLHSPLISRQTTSM-------------EKDMPHTAHGTLSTFRHGSQVQGAQGEGAGSMGIGGGWQVAWKWTEREDESGQKEGG-FKRIYLHQEGFPGSRRGSIVSLPGGDGTGEADFVQASALVSQPALYSKDLLKEHTIGPAMVHPSET-TKGSIWHDLHDPGVKRALVVGVGLQILQQFSGINGVLYYTPQILEQAGVGILLSNMGISSSSASLLISALTTFVMLPAIAVAMRLMDLSGRRTLLLTTIPILIASLLVLVISNLVHMNSIVHAVLSTVSVVLYFCFFVMGFGPAPNILCSEIFPTRVRGICIAICALTFWICDIIVTYSLPVLLKSIGLAGVFGMYAIVCCISWVFVFIKVPETKGMPLEVITEFFSVGARQAEAAK

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
725		85		14	0.993533
726		85	14		0.993533
727	85			14	0.993533
795	10	90			0.90298
1135			20	20	0.99255
1176		80		20	0.995493
1181			80	20	0.995493
1194	88			11	0.923564
1206	88			11	0.923564
1207	88			11	0.923564
1263		85		14	0.993533
1396	25		75		0.996473
1397		25	75		0.996473
1398	25			75	0.996473
1399		75		25	0.996473
1422		66	33		0.997452
2027	10		90		0.90298
2094	10		90		0.90298
2097	90			10	0.90298
2098	88			11	0.923564
2428	83		16		0.994512
2451		16		83	0.994512
2460		16		83	0.994512
2894	90		9		0.999842
2918		90		10	0.999898
3088			8	91	0.999766
3188	6	93			0.999153
3189	90	6		3	0.997544

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain