SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2596

Length: 2241 nt

UniGene Fasta

>sp_v3.0_unigene2596
AGAAAAATAGAGATATACATAGAAGATATTTGGTTGGGTTGTAATTAGGCTGTAGGGATATACAAAAGGGGTCTGCCCAGCTGTTGGTGTTTGGATAGATTGCATCTGTGTTATTTGCAATTGCAACTGCATTTATCCAGAGGCATTATTTGACATGTTAGCTGTGTGAAATATAAGGACATGTATCTACTGGGAACAATGACAAAGTATTGTGGGTATTGCATCACCTAGATGGTGCGTAGCAAGAGCTACAATTATTCTGCCTGTCGGGGTTGTTTAATTTCCTGTGCATAAGTTGTTTGCCCACATGAACCACATGATTTTCTTAAAGTTTGTTGGTTTGTTTAAGTTCTCTCAGAAGCACTGACAGCCTAAAGGCACAGCCAGTAATATACATGAGTGAGTGAGCTTATCCATCCTAGCAGCTACAAATATTCCGGTATTTTCACAGTGAGTGGCTTCCCTGTTAGTTGAAGTTCGGTGCAAGTTGTGTGATTTTACAGCTTGATCAGGTACTTGAGACAGGGTTAAGTGTACGAGGACATAACATTTGAATGTAAAGAAATGAAAAAAAGTCATTCTCACATGGGTGTGGGAGTGGAAAGAAGGTGGCTTCTTCCACTCATTGCCAGCTCCATGGTATCTTTAATTGTTTTTATCATGGCAATGATCCACTTTGGATATTGTTCCCGGGAGTCTAATTCTGCTGATGTATTTCATCTTAAGGGAACTGATGATTTTAGTGGTCATTATGTGGAATCTGATATAGTTGAACTTCCTCATCGTGGCCTACCGAAGCCTCCAAGAATAGCATATCTTATTTCTGGAACCAAAGGAGATAGCCAGAGGATGATAAGGACTTTACAGGCTCTTTATCATCCAAGAAATCATTATTTATTGCATTTAGATCTGGAAGCACCTCCAAGGGAAAGGCTTGAATTAGCAAAATCTGTGAAGATGGAGCCAATCTTCGTGGAAGCAAAGAATGTCCATGTCGTCGGTAAGGCCAATCTGGTTACATATAAGGGTCCAACTATGATCGCTTGTACACTTCATGCCGTGGCCATTCTGCTAAAGCAAAGTAAAGAATGGGATTGGTTTATCAACCTCAGTGCATCTGATTATCCACTGGTTACACAAGATGATTTACTCCATGTTTTCTCTTACTTGCCAAAGGACCTAAATTTCATTGAGCATACGAGTGATATTGGATGGAAAGAGTATCAAAGAGCTAAACCAATTATTATTGACCCAGGATTGTACCATTCAAGAAAGTCTGACATATTTTGGGCCACTCAGCATCGAGCTGTTCCAACTGCGTTCAAATTATATGCAGGTTCAGCGTGGGTGGTTTTAACTCGTACATTTTTGGAGTTTTGTATATGGGGTTGGGACAATCTTCCACGAACAGTTTTAATGTACTACACAAACTTTATCTCATCCCCGGAAGGCTATTTTCACACTGTTATTTGCAATTCCCAGGAGTTCCAGAATACTTCAGTTAACCATGACTTACATTTCATAAAATGGGATACTCCACCCAAACAACATCCTATGTTATTAACTTCAAATCATTTTGATGAAATGATTGAAAGTGGTGCGCCATTTGCTAGGAAGTTTCCTAAAGGTGATCCGGTACTAGATAAAATAGACAAAGAGATTTTGGGTCGTTCTAATGGCCAATTTACACCTGGTGGATGGTGTGCAGGAAGTTCTATTGGTAGTAAAGATCCCTGTGCTGTAAGGAGTGATCCAACAGTTCTTAGACCTGGGCCAGGTGCCAAGAGGCTTGAAAGCTTGGTTTTGAAACTGCTTGCAACTGAAAACTTTCGTGCTAAGCAATGCAAATAAGATAACCACTTTTATATAGTGTTTCAAAGTTTGCAGACAATAGTAGCACAGAAGATCTTGCCCCTTTATAGAGAAAGCAAGTTGATGCCTTTGGCTGTTGGAAAGGGTTTGTACGGAAAAAATTAGACAGAGTTCAGATGATGTTAAATGTTTTTGTTATGATGTCAAATGCCAATTCATTTTCAGAGTTGCAGCAGCTGGGGTTATGTGCCATTGTTTGGGTTTGCTTTCAATGAAACAACCATTGATAACATATTCTAGTGGCAGCAGGTGAGCTGGGCTATCAATTTCTAATTATCGCTTTGAAGCTGTAACTGGAATTTGGTAGCCCTTGTTACTGTAAAACATATTTCACACGAAATTACCAGGCTATTCTGAAAAAATTCTGAC

Ace file of the UniGene sp_v3.0_unigene2596

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase-like protein [Arabidopsis thaliana] gb\|AAF86534.1\|AC002560_27 F21B7.14 [Arabidopsis thaliana] gb\|AAK92772.1\| putative glycosylation enzyme [Arabidopsis thaliana] gb\|AAM20384.1\| putative glycosyla	-	-	0.0	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	74%
Sma3	Acetylglucosaminyltransferase, putative	-	-	4.113e-27	-

Source	ECs	Term	Type	e value	Identity
Sma3	Protein xylosyltransferase.	EC:2.4.2.26	-	2.495e-29	-

Source	KEGGs	Term	e value	Identity
Sma3	Glycosaminoglycan biosynthesis - chondroitin sulfate	00532	2.495e-29	%
Sma3	Glycosaminoglycan biosynthesis - heparan sulfate	00534	2.495e-29	%
Sma3	Metabolic pathways	01100	2.495e-29	%

Source	Gene names
Sma3	109N23.3; AT4g03340; AT4g27480; At1g03520; At1g53100; At1g71070; At2g37580; At2g37585; At3g03690; At3g15350; At3g24040; At4g03340; At5g15050; At5g39990; B1015E06.23; BGGP; F23N20.6; F27G19.80; F2G14_170; F4C21.27; F8L10.4; GSVIVT00003832001; GSVIVT0001688

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	acetylglucosaminyltransferase activity	GO:0008375	Molecular Function	-
Sma3	G-protein coupled receptor signaling pathway	GO:0007186	Biological Process	-
Sma3	isopeptide cross-linking via N6-(L-isoglutamyl)-L-lysine	GO:0018153	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Inositol monophosphatase	IPR000760	-	-
Sma3	Glycosyl transferase, family 14	IPR003406	-	-
Sma3	Protein of unknown function DUF674	IPR007750	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G03520.1	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein chr1:877948-879553 REVERSE LENGTH=447	58%
RefSeq	Arabidopsis thaliana	NP_171851.1	core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase-like protein [Arabidopsis thaliana]	58%
RefSeq	Populus trichocarpa	XP_002324028.1	predicted protein [Populus trichocarpa]	60%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P276

Fln msg:

Fln protein: MKKSHSHMGVGVERRWLLPLIASSMVSLIVFIMAMIHFGYCSRESNSADVFHLKGTDDFSGHYVESDIVELPHRGLPKPPRIAYLISGTKGDSQRMIRTLQALYHPRNHYLLHLDLEAPPRERLELAKSVKMEPIFVEAKNVHVVGKANLVTYKGPTMIACTLHAVAILLKQSKEWDWFINLSASDYPLVTQDDLLHVFSYLPKDLNFIEHTSDIGWKEYQRAKPIIIDPGLYHSRKSDIFWATQHRAVPTAFKLYAGSAWVVLTRTFLEFCIWGWDNLPRTVLMYYTNFISSPEGYFHTVICNSQEFQNTSVNHDLHFIKWDTPPKQHPMLLTSNHFDEMIESGAPFARKFPKGDPVLDKIDKEILGRSNGQFTPGGWCAGSSIGSKDPCAVRSDPTVLRPGPGAKRLESLVLKLLATENFRAKQCK*

Protein Length: 430

Fln nts: AGAAAAATAGAGATATACATAGAAGATATTTGGTTGGGTTGTAATTAGGCTGTAGGGATATACAAAAGGGGTCTGCCCAGCTGTTGGTGTTTGGATAGATTGCATCTGTGTTATTTGCAATTGCAACTGCATTTATCCAGAGGCATTATTTGACATGTTAGCTGTGTGAAATATAAGGACATGTATCTACTGGGAACAATGACAAAGTATTGTGGGTATTGCATCACCTAGATGGTGCGTAGCAAGAGCTACAATTATTCTGCCTGTCGGGGTTGTTTAATTTCCTGTGCATAAGTTGTTTGCCCACATGAACCACATGATTTTCTTAAAGTTTGTTGGTTTGTTTAAGTTCTCTCAGAAGCACTGACAGCCTAAAGGCACAGCCAGTAATATACATGAGTGAGTGAGCTTATCCATCCTAGCAGCTACAAATATTCCGGTATTTTCACAGTGAGTGGCTTCCCTGTTAGTTGAAGTTCGGTGCAAGTTGTGTGATTTTACAGCTTGATCAGGTACTTGAGACAGGGTTAAGTGTACGAGGACATAACATTTGAATGTAAAGAA_-_ATGAAAAAAAGTCATTCTCACATGGGTGTGGGAGTGGAAAGAAGGTGGCTTCTTCCACTCATTGCCAGCTCCATGGTATCTTTAATTGTTTTTATCATGGCAATGATCCACTTTGGATATTGTTCCCGGGAGTCTAATTCTGCTGATGTATTTCATCTTAAGGGAACTGATGATTTTAGTGGTCATTATGTGGAATCTGATATAGTTGAACTTCCTCATCGTGGCCTACCGAAGCCTCCAAGAATAGCATATCTTATTTCTGGAACCAAAGGAGATAGCCAGAGGATGATAAGGACTTTACAGGCTCTTTATCATCCAAGAAATCATTATTTATTGCATTTAGATCTGGAAGCACCTCCAAGGGAAAGGCTTGAATTAGCAAAATCTGTGAAGATGGAGCCAATCTTCGTGGAAGCAAAGAATGTCCATGTCGTCGGTAAGGCCAATCTGGTTACATATAAGGGTCCAACTATGATCGCTTGTACACTTCATGCCGTGGCCATTCTGCTAAAGCAAAGTAAAGAATGGGATTGGTTTATCAACCTCAGTGCATCTGATTATCCACTGGTTACACAAGATGATTTACTCCATGTTTTCTCTTACTTGCCAAAGGACCTAAATTTCATTGAGCATACGAGTGATATTGGATGGAAAGAGTATCAAAGAGCTAAACCAATTATTATTGACCCAGGATTGTACCATTCAAGAAAGTCTGACATATTTTGGGCCACTCAGCATCGAGCTGTTCCAACTGCGTTCAAATTATATGCAGGTTCAGCGTGGGTGGTTTTAACTCGTACATTTTTGGAGTTTTGTATATGGGGTTGGGACAATCTTCCACGAACAGTTTTAATGTACTACACAAACTTTATCTCATCCCCGGAAGGCTATTTTCACACTGTTATTTGCAATTCCCAGGAGTTCCAGAATACTTCAGTTAACCATGACTTACATTTCATAAAATGGGATACTCCACCCAAACAACATCCTATGTTATTAACTTCAAATCATTTTGATGAAATGATTGAAAGTGGTGCGCCATTTGCTAGGAAGTTTCCTAAAGGTGATCCGGTACTAGATAAAATAGACAAAGAGATTTTGGGTCGTTCTAATGGCCAATTTACACCTGGTGGATGGTGTGCAGGAAGTTCTATTGGTAGTAAAGATCCCTGTGCTGTAAGGAGTGATCCAACAGTTCTTAGACCTGGGCCAGGTGCCAAGAGGCTTGAAAGCTTGGTTTTGAAACTGCTTGCAACTGAAAACTTTCGTGCTAAGCAATGCAAATAA___GATAACCACTTTTATATAGTGTTTCAAAGTTTGCAGACAATAGTAGCACAGAAGATCTTGCCCCTTTATAGAGAAAGCAAGTTGATGCCTTTGGCTGTTGGAAAGGGTTTGTACGGAAAAAATTAGACAGAGTTCAGATGATGTTAAATGTTTTTGTTATGATGTCAAATGCCAATTCATTTTCAGAGTTGCAGCAGCTGGGGTTATGTGCCATTGTTTGGGTTTGCTTTCAATGAAACAACCATTGATAACATATTCTAGTGGCAGCAGGTGAGCTGGGCTATCAATTTCTAATTATCGCTTTGAAGCTGTAACTGGAATTTGGTAGCCCTTGTTACTGTAAAACATATTTCACACGAAATTACCAGGCTATTCTGAAAAAATTCTGAC

Fln Alignment:

Contig2596___ERRWLLPLIASSMVSLIVFIMAMIHFGYCSRESNSADVFHLKGTDDFSGHYVESDIVELPHRGLPKPPRIAYLISGTKGDSQRMIRTLQALYHPRNHYLLHLDLEAPPRERLELAKSVKMEPIFVEAKNVHVVGKANLVTYKGPTMIACTLHAVAILLKQSKEWDWFINLSASDYPLVTQDDLLHVFSYLPKDLNFIEHTSDIGWKEYQRAKPIIIDPGLYHSRKSDIFWATQHRAVPTAFKLYAGSAWVVLTRTFLEFCIWGWDNLPRTVLMYYTNFISSPEGYFHTVICNSQEFQNTSVNHDLHFIKWDTPPKQHPMLLTSNHFDEMIESGAPFARKFPKGDPVLDKIDKEILGRSNGQFTPGGWCAGSSIGSKDPCAVRSDPTVLRPGPGAKRLESLVLKLLATENFRAKQC
A9P276______________DRKWLAPMVASFLVSMILIYIATIRLGSSTQGVNSS----LKQIDDSGGYFVEANLGEDAHSGEAKLPRLAYLISGTKGDSHRMKRTLQALYHPLNHYLLHLDLEAPPRERLEVAMYVKSDPTFSKINNVHVVGKANLVTYKGPTMVACTLQAVAILLRQSKDWDWFINLSASDYPLVTQDDLLRVFSALPRGLNFIEHTSDIGWKEYQRAKPIIIDPGLYLPKKSDIFWVTQHRAVPTSFKLFTGSAWVMLTRTFLEFCIWGWDNLPRTVLMYYTNFVSSPEGYFHTVICNSQVFRNTTVNHDLHYIAWDTPPKQHPTSLTVKNFDDMVKSGAPFARKFAKDDPVLDKIDKELLGRSDGQFTPGGWCVGSRENGRDPCAVRGDPAVFKPGPGDKRLEGLLFKLLAPENFRAKQC

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
56		25	75		0.996473
58	75			25	0.996473
59		25		75	0.996473
60	75		25		0.996473
65	75	25			0.996473
66	75			25	0.996473
67	75			25	0.996473
68	75		25		0.996473
70		25	75		0.996473
71			75	25	0.996473
75	25			75	0.996473
76		25	75		0.996473
77		75		25	0.996473
79	25	75			0.996473
117		14		85	0.993533
152		11		88	0.923564
2125			25	75	0.996473
2134			25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain