SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2595

Length: 2946 nt

UniGene Fasta

>sp_v3.0_unigene2595
ACGTTCATCTGAGGGGTTTTCAGCTTTTTCGGTTCACCCCCTGCGTAAAAATCAATCCAAACCCCAAATGTCTGACGAAATTCATGCGATTAATTTTTCCTCATCGAGATCTCTGGTGTGATCCTTTAAAATCATTGATCTTTATATCTTTTAAATTCGACATCGATGTGCTTTCCTCCTCAAAATCGTCTTCAAGGAGCCTTTTTTATCTGGCTTCGGCGGACTCTTTAGGGCAGTGAGAACAGGGGATCGGCATTGATGGCCACATAATTTTATACAGGAACCATGTTTTTGGCTGTTGAGCTTCGACATTTTCAGTAACTTACAAGGTGTTTTTTTTGGGGGCGAGGGTTCTGCTAATTTTGAAGACTGGGTTGTTTCTGCACAGAAGCGGGAAGAAGAGGACTTTTTGTCTTTTCTTTTGTCTTTCGCATTTGAAAAATATAACCTGTAAATCGATGCTGGTCAGTTCAGGGTAGCGAGTCAAGACAAGTTTTGAATAGGGAAACCCTTACTCTACTGCTGTGGTCTAGGATCTGATCGTTTACTGGGAGCAATATTTTCGCCGTGGGGGTATCAAGCGTACGTGGAGTCTACAGCGCGCCGTTAGTTTGCAGGTACGTCAATGACAAAAGAGCAATGCTGAAAGTACATATTTGAGAAATGTCATGAAAAGCAAATGTTTGAGTGCAAATCAAACATGTATCTCCCATTTCGTCATGATGGCACTGTTAAAGAGTCTATGCTGAATAGTCCATCCTCAAACTTGCTGGATTCTACAAGCACAGGTTGGCCTTTCACGACAACATTTTCTACACAATCGGGATCAAACCCTGTTTTCCATCACTCTGTTGGCAGTATACAGGGATTGCATAATGTTCATGGTAATTACAGTATGCCAAACATGCCAACCTCTATATCTACCAACAATTCAGGATTTGGAGGACTTCCCTCTGGCGGGGTCCATCAACCCTCTGGGAGCCTTTCTACTGGACGTTTTGCATCAAACAACCTTCCAGTTGCTTTCTCCCAGTTATCACATGGTGGTTTGCATGGCCATACAGGGATAACAAACCGAGGAGGATCAGGAGTATCTCCTCTTACCAGCAATGCAGGGCCTAGGATAACAAGCTCTGCTGGGAACATTATGGGTGCAGCTGGAGCTGCTGGAGGCAATCTTGGGAGGACCATAAATCTTGGTGCTGGGCAAAGTCCTGTATCAGGATCGAGTCGCGCTGGAGCTGGAGGTATTGGGGTACAAGGGCCTGGTAGACCGATGAACAGCGTTCCCCAACAAGCTTCAACGCAGGTGGTCTCTCTACTTGGAGGTACATTTTCAAGTTCTCTAGGAGCAGCTAATACTGGGCAAACCATCATGGGCAATGGCCATCAAGTTTCCATGGGTCTTGCAAATGATCTCAATTCAAATGATAGTGCACCGTTTGACATCAATGACTTCCCTCAGTTAACTTCTCGCCCCAATTCTAGTGGAGGGGCACAAGGGCAGTTAGCTTCAATAAGAAAGCAAGGTCTTAGTGTTAATTCTCTTTCTCAACAAAACCAAGAGTTCAGCATTCAAAATGAAGACTTCCCAGCATTACCGGGTTTTAAAGGGAATGCGGATTTTGCAATCGATTTGCATCAGAAGGATCATCATGAAAATGCTTTAGCATTGATGCAGTCACACCATTATCAAATGGGGAGATCTGCTGGATTTTCTTTGGGAGGGTCATATGCTTCTCATCATCAGCAGCAACAACAACAAGAAATTCGATCTGGACTATCAACAAACAGTGCAGGAGGGTCATTTGCAGCTATTGCCAATTCTGCAGACCTTATGCATTTACATGGTTCTGATCTATTTCCATCTACGCATGGCCAAGCTTCATACCACTCTCAGGTTGTTCCTGGATTGAGGTCTGGGGTTCCTGGCATAGGCTCATATGATCATCTTCTTCAGCAGTATCATCATCATCATAATCACTCTCAGTTCCGACACGCACCATCAGTTAATCCACCATCGAAGGAGCATTTGCTGAAATCCATGCATGGGCTTCAAGGTGCTTCTGATAATTTTGGATTGCTAGGTCTTCTCAGTGTAATCAGGATGAGTGAACCTGATGTAACAACGCTAGCTTTGGGTATAGATCTTACGACTTTAGGATTAAATTTAAACTCAAGAGATAATCTGTATAGGACATTTGCCTCCCCTTGGGCTGATGGGCCTGCAAAAGGAGAGCCTGAGTATACGTTGCCACAATGCTATTCTCAACAAGCTCCTAGGTTGCAGCCAGGGTACTTTGCTAGGTTCAGTGAGGAGACTCTTTTCTATATATTTTACAGCATGCCAAAGGATGAAGCTCAGCTATTTGCTGCCAGTGAGCTGTGTCGAAAGGGTTGGTTCTTTGACAAGGAATCGGGTATGTGGTTAACACATGTACCGCAAATTGAGTCACTTGTCAAGACAAATACATATGAGCGGGGCTCTTATTACTTTTTTGATCCCAATATATGGGACTATGTACAGAAGGATAACCATGTGCTACATTATGAAATGATAGAGAAGAAACCCCGATTATCTCAAGCACCTGAATCATAGCAGGCATCTCAATCCGACAAATTGCAGCATCCTGCCCTGTAATCATAATAGATTGTAGAGCAATTCGTCAACTTTGTAACGTGTAGTTAGTCTCCTGAGATTACCAATTCTTTTGTACGCAAGCTATGCAATACTTCAACTGCTTGGATGTAGCAAGTTGAAATAAGTACTGCAAAAAGGTGCCTTGATTATTTAGAATTGTGAGCAAAGTTCTATGAGAGTTAATATCAGATGTTTAGGGTGCCTTCAAGTTATTTTGTTTTTTGTTCGAGAATGTTTATCTTCAAATATTTGAGTAAGCCTCTGTTCTACAGAATGTATATCTCTCGGGTTTTTGTTATAGTGTG

Ace file of the UniGene sp_v3.0_unigene2595

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CCR4-NOT transcription complex subunit 2 [Arabidopsis thaliana] gb\|AEE28167.1\| CCR4-NOT transcription complex subunit 2 [Arabidopsis thaliana]	-	-	0.0	48%
FL-Next	sp=Probable NOT transcription complex subunit VIP2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	46%
Sma3	NOT2/NOT3/NOT5 family protein, expressed	-	-	4.045e-09	-

Source	Gene names
Sma3	At1g07705; At5g59710; At5g59710/mth12_110; F24B9.20; GSVIVT00001127001; GSVIVT00001128001; GSVIVT00024416001; GSVIVT00031476001; LOC_Os03g52594; MICPUCDRAFT_69393; MICPUN_56660; OJ1311_D08.1; OJ1369_G08.17; OSJNBb0016H12.10; OSTLU_8137; Os02g0782200; Os03

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	transcription regulator activity	GO:0030528	Molecular Function	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	NOT2/NOT3/NOT5	IPR007282	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G07705.2	NOT2 / NOT3 / NOT5 family chr1:2382090-2385856 FORWARD LENGTH=614	0.0	52%
RefSeq	Arabidopsis thaliana	NP_001077478.1	CCR4-NOT transcription complex subunit 2 [Arabidopsis thaliana]	0.0	52%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9FPW4

Fln msg:

Fln protein: MFECKSNMYLPFRHDGTVKESMLNSPSSNLLDSTSTGWPFTTTFSTQSGSNPVFHHSVGSIQGLHNVHGNYSMPNMPTSISTNNSGFGGLPSGGVHQPSGSLSTGRFASNNLPVAFSQLSHGGLHGHTGITNRGGSGVSPLTSNAGPRITSSAGNIMGAAGAAGGNLGRTINLGAGQSPVSGSSRAGAGGIGVQGPGRPMNSVPQQASTQVVSLLGGTFSSSLGAANTGQTIMGNGHQVSMGLANDLNSNDSAPFDINDFPQLTSRPNSSGGAQGQLASIRKQGLSVNSLSQQNQEFSIQNEDFPALPGFKGNADFAIDLHQKDHHENALALMQSHHYQMGRSAGFSLGGSYASHHQQQQQQEIRSGLSTNSAGGSFAAIANSADLMHLHGSDLFPSTHGQASYHSQVVPGLRSGVPGIGSYDHLLQQYHHHHNHSQFRHAPSVNPPSKEHLLKSMHGLQGASDNFGLLGLLSVIRMSEPDVTTLALGIDLTTLGLNLNSRDNLYRTFASPWADGPAKGEPEYTLPQCYSQQAPRLQPGYFARFSEETLFYIFYSMPKDEAQLFAASELCRKGWFFDKESGMWLTHVPQIESLVKTNTYERGSYYFFDPNIWDYVQKDNHVLHYEMIEKKPRLSQAPES*

Protein Length: 641

Fln nts: ACGTTCATCTGAGGGGTTTTCAGCTTTTTCGGTTCACCCCCTGCGTAAAAATCAATCCAAACCCCAAATGTCTGACGAAATTCATGCGATTAATTTTTCCTCATCGAGATCTCTGGTGTGATCCTTTAAAATCATTGATCTTTATATCTTTTAAATTCGACATCGATGTGCTTTCCTCCTCAAAATCGTCTTCAAGGAGCCTTTTTTATCTGGCTTCGGCGGACTCTTTAGGGCAGTGAGAACAGGGGATCGGCATTGATGGCCACATAATTTTATACAGGAACCATGTTTTTGGCTGTTGAGCTTCGACATTTTCAGTAACTTACAAGGTGTTTTTTTTGGGGGCGAGGGTTCTGCTAATTTTGAAGACTGGGTTGTTTCTGCACAGAAGCGGGAAGAAGAGGACTTTTTGTCTTTTCTTTTGTCTTTCGCATTTGAAAAATATAACCTGTAAATCGATGCTGGTCAGTTCAGGGTAGCGAGTCAAGACAAGTTTTGAATAGGGAAACCCTTACTCTACTGCTGTGGTCTAGGATCTGATCGTTTACTGGGAGCAATATTTTCGCCGTGGGGGTATCAAGCGTACGTGGAGTCTACAGCGCGCCGTTAGTTTGCAGGTACGTCAATGACAAAAGAGCAATGCTGAAAGTACATATTTGAGAAATGTCATGAAAAGCAA_-_ATGTTTGAGTGCAAATCAAACATGTATCTCCCATTTCGTCATGATGGCACTGTTAAAGAGTCTATGCTGAATAGTCCATCCTCAAACTTGCTGGATTCTACAAGCACAGGTTGGCCTTTCACGACAACATTTTCTACACAATCGGGATCAAACCCTGTTTTCCATCACTCTGTTGGCAGTATACAGGGATTGCATAATGTTCATGGTAATTACAGTATGCCAAACATGCCAACCTCTATATCTACCAACAATTCAGGATTTGGAGGACTTCCCTCTGGCGGGGTCCATCAACCCTCTGGGAGCCTTTCTACTGGACGTTTTGCATCAAACAACCTTCCAGTTGCTTTCTCCCAGTTATCACATGGTGGTTTGCATGGCCATACAGGGATAACAAACCGAGGAGGATCAGGAGTATCTCCTCTTACCAGCAATGCAGGGCCTAGGATAACAAGCTCTGCTGGGAACATTATGGGTGCAGCTGGAGCTGCTGGAGGCAATCTTGGGAGGACCATAAATCTTGGTGCTGGGCAAAGTCCTGTATCAGGATCGAGTCGCGCTGGAGCTGGAGGTATTGGGGTACAAGGGCCTGGTAGACCGATGAACAGCGTTCCCCAACAAGCTTCAACGCAGGTGGTCTCTCTACTTGGAGGTACATTTTCAAGTTCTCTAGGAGCAGCTAATACTGGGCAAACCATCATGGGCAATGGCCATCAAGTTTCCATGGGTCTTGCAAATGATCTCAATTCAAATGATAGTGCACCGTTTGACATCAATGACTTCCCTCAGTTAACTTCTCGCCCCAATTCTAGTGGAGGGGCACAAGGGCAGTTAGCTTCAATAAGAAAGCAAGGTCTTAGTGTTAATTCTCTTTCTCAACAAAACCAAGAGTTCAGCATTCAAAATGAAGACTTCCCAGCATTACCGGGTTTTAAAGGGAATGCGGATTTTGCAATCGATTTGCATCAGAAGGATCATCATGAAAATGCTTTAGCATTGATGCAGTCACACCATTATCAAATGGGGAGATCTGCTGGATTTTCTTTGGGAGGGTCATATGCTTCTCATCATCAGCAGCAACAACAACAAGAAATTCGATCTGGACTATCAACAAACAGTGCAGGAGGGTCATTTGCAGCTATTGCCAATTCTGCAGACCTTATGCATTTACATGGTTCTGATCTATTTCCATCTACGCATGGCCAAGCTTCATACCACTCTCAGGTTGTTCCTGGATTGAGGTCTGGGGTTCCTGGCATAGGCTCATATGATCATCTTCTTCAGCAGTATCATCATCATCATAATCACTCTCAGTTCCGACACGCACCATCAGTTAATCCACCATCGAAGGAGCATTTGCTGAAATCCATGCATGGGCTTCAAGGTGCTTCTGATAATTTTGGATTGCTAGGTCTTCTCAGTGTAATCAGGATGAGTGAACCTGATGTAACAACGCTAGCTTTGGGTATAGATCTTACGACTTTAGGATTAAATTTAAACTCAAGAGATAATCTGTATAGGACATTTGCCTCCCCTTGGGCTGATGGGCCTGCAAAAGGAGAGCCTGAGTATACGTTGCCACAATGCTATTCTCAACAAGCTCCTAGGTTGCAGCCAGGGTACTTTGCTAGGTTCAGTGAGGAGACTCTTTTCTATATATTTTACAGCATGCCAAAGGATGAAGCTCAGCTATTTGCTGCCAGTGAGCTGTGTCGAAAGGGTTGGTTCTTTGACAAGGAATCGGGTATGTGGTTAACACATGTACCGCAAATTGAGTCACTTGTCAAGACAAATACATATGAGCGGGGCTCTTATTACTTTTTTGATCCCAATATATGGGACTATGTACAGAAGGATAACCATGTGCTACATTATGAAATGATAGAGAAGAAACCCCGATTATCTCAAGCACCTGAATCATAG___CAGGCATCTCAATCCGACAAATTGCAGCATCCTGCCCTGTAATCATAATAGATTGTAGAGCAATTCGTCAACTTTGTAACGTGTAGTTAGTCTCCTGAGATTACCAATTCTTTTGTACGCAAGCTATGCAATACTTCAACTGCTTGGATGTAGCAAGTTGAAATAAGTACTGCAAAAAGGTGCCTTGATTATTTAGAATTGTGAGCAAAGTTCTATGAGAGTTAATATCAGATGTTTAGGGTGCCTTCAAGTTATTTTGTTTTTTGTTCGAGAATGTTTATCTTCAAATATTTGAGTAAGCCTCTGTTCTACAGAATGTATATCTCTCGGGTTTTTGTTATAGTGTG

Fln Alignment:

Contig2595___SMLNSPSSNLLDSTSTGWPFTTTFSTQSGS-NPVFHHSVGSIQGLHNVHGNYSMPNMPTSISTNNSGFGGLPSGGVHQPSGSLSTGRFASNNLPVAFSQLSHGGLHGHTGITNRG-------------------------------------GSGVSPLTSNAGPRITSSAGNIMXXXXXXXXNLGRTINLGA----GQSPVXXXXXXXXXXXXXXXXXRPMNSVPQQASTQVVXXXXXXXXXXXXAANTGQTIMGNGHQVSMG--LANDLNSNDSAPFDIN-DFPQLTSRPNSSGGAQGQLASIRKQGLSVNSLSQQNQEFSIQNEDFPALPGFKG-NADFAIDLHQKDH-HENALALMQSHHYQMGRSAGFSLGGSYASHHXXXXXXEIRSGLSTNSAGGSFAAIANSADLMHLHGSDLFPSTHGQASYHSQVVPGLRSGVPGIGSYDXXXXXXXXXXXXSQF--RHAPSVNPPSKEHLLKSMHGLQGASDNFGLLGLLSVIRMSEPDVTTLALGIDLTTLGLNLNSRDNLYRTFASPWADGPAKGEPEYTLPQC-YSQQAPRLQPGYFARFSEETLFYIFYSMPKDEAQLFAASELCRKGWFFDKESGMWLTHVPQIESLVKTNTYERGSYYFFDPNIWDYVQKDNHVLHYEMIEKKPRL
Q9FPW4______________SSLNGSASNLPDGS--GRSFTASYSGQSGAPSPSFHHT-GNLQGLHNIHGNYNVGNMQGTLTSRNSSMNSIPSAGVQQPNGSFSSGRFASNNLPVNLSQLSHGSSHGHSGIPNRGLNVVGNPGFSSNANGVGGSIPGILSTSAGLSNRNSVPGMGISQLLGNSGPRITNSMGNMVGGG-----NLGRNISSGGLSIPGLSSRLNLAANSGSGLNVQGQNRMMGGVLPQGS-QVMSMLGN-------SYHTGGGPLSQNHVQSVNNMMLSD-HPNDSSLFDINNDFPQLTSRPGSAGGTQGHLGSLRKQGLGV-PLVQQNQEFSIQNEDFPALPGYKGGNSEYPMDLHQKEQLHDNAMSMMHSQNFSMGRSGGFNLGATYSSHRPQQQPQH------TSSTGG-------------LQGLGLRPLSSPNA-------------VSSIG-YDQLIQQYQQHQNQSQFPVQQMSSIN----QFRDSEMKSTQSEADPFCLLGLLDVLNRSNPELTSLALGIDLTTLGLDLNSTGNLYKTFASPWTNEPAKSEVEFTVPNCYYATEPPPLTRASFKRFSYELLFYTFYSMPKDEAQLYAADELYERGWFYHKELRVWFFRVG--EPLVRAATYERGTYEYLDPNSFKTVRKEHFVIKYELMEKRPSL

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
2816			45	54	1.0

SSRs (tot: 2)

Start position	End position	Sequence	Length
1754	1765	CAA CAA CAA CAA	12
1965	1978	ATC ATC ATC ATC AT	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain