SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2592

Length: 3472 nt

UniGene Fasta

>sp_v3.0_unigene2592
TGAGCTGGTTTTGAACCATATTCCAAATTCACACAGTGCTAATACTAGCATTTCATCAGTATTAAATGCATTATCAAAGCCTTTAAAACTACGTCTTTGTAGAGCACAAGGAGAAAAGTCTCTTCGTGATCACTCAAGTGTTCTATTTATGAACCCTTTGGCTAGTTTTGCTGATCTTGAAGATCTACTTTGGTCCAAAGTTCAGACAAATGAAACTGAAACCAGATGTCATAGTGGTGAAGTGCAACCTGGTTCCACATCTGTATCAACACCATCTCAAACAATACCTGCACAAGCTGCTGAGGGTCGGCCTTCAACAAGATCAAAATCATTGACAGTATTGGGAAGCACTACAAATGCCATGGACTCTGCACATTTGAAAGCATCAAAGGAAAAGGGCAAATCCATCTCAAGGAATGTCATTGATGATTTCAGGGGCCCAGAAACAAGGAGTGCAGCACGGAGAAAAGCAACAATGGACAGCTATTCACAAGTGAAGCAACAAAATGGAGAGTCTAGTGATGAGGATGAGGATCATGATTTCACTCCTGTTGAGATTGGAGAGGCTATACCTATGGAAGAAGATTACTCTTCCGAAGAGGACGGAGAAGAAGATGACGAAGAGGATGAAATTTACTTGGCTGAACGAGTGCATGAGGCAGAGTTGGGGTATCCATCATATTCCAGTGCATTTGCTTCAAGAACTGCAACAACTGCTGCTATGACTGGCCATGCATCTACCAGTGCCAAAGGAGCTATCAGAAGTAGAGACCACCGGACTGTTTCTAATCGTAGAAATGCAAATGTCTGTCCTCGATTGAACTTCTTTATTGGTGGGAAGCAGCTTGACAGGTCATCTACATTATACCAGGCAATTATGCATCATACAGTACTAGATGGATATGAGCAAAGGTATGCTGGTTCAGATTATTCTGGGTATGACAGTCGAAGATTTTGGGATGAAGTTTACACTATTACCTATCAAAGCACAGATGCAACAGCCAAGATGGATTTGACTGGAACATCCAAAATGTATTGTACACCTAAGAATACTGAGCATATGTCACTTCTAGATAGCATTTTGCAAAGAAAACTTCCCTGTGACTTGGACAAATCAAATAGCACATATAAGATTTTGTTGTTACTTCGAATAATAGAAGGACTCAACCGTTTAGCTCCTTCTTTGAGAGCTCAGGCCTCATCTGATGCTTTTGCAGAAGGAAAATTGACAAACCTAGATGAATTGAAAGTCAATGGCCCTGTTGTTCCCCAAGAAGAATTTTTAAGTAGCAAGCTTACACCAAAGCTGACACGCCAGATGCAAGATGCTCTGGCATTATGTAGTGGTAGTATGCCACCTTGGTGTCAAGAACTGACCAAAGCCTGTCCATTTCTGTTTCCATTTGAGACAAGGAGGCAATATTTTTATTCCACTGCATTAGGATTATCCCGTGCATTGCAGTACTTTCAGCAGCAGCAGAGTGCTGAAAATTCAAATTTGGTAAACAATCGTGGACGTAATGTTGTTAGACTGGAACGCCAAAAGGTTAGAGTCTCAAGACGGCGTATATTGGACTCAGCTGTGAAGGTGATGGAAATGTTCTGTTCTGGTCAGAAGGCTGTCCTTGAAGTTGAGTACTTTGGGGAGGTTGGCACTGGTCTAGGGCCAACTCTTGAGTTCTACACACTTGTTAGCCAGGAATTGCAAAGGAGTACACTAGGCATGTGGAGAACAAACTCATCACCTAAAGAAGTTGTAGAAAGCGATGTTCTGATGCCAGATGCTGAAGAAGATCATCTGTCGCTGTCAGCTACAAAGAATAACACACACCGTGGGCATACAGAACAAAGTGGATGGTTTGTTCAAGCACCTCTTGGCTTATTTCCTCGTCCATTTCCTTCTAATACGGATTGTTCAAATGGAAGTGGATTTTCCAAAGTGAGAGATAATTTTTGTCTTCTTGGACGTCTAATGGCAAAAGCTCTTCAAGATGGCCGGCTTCTAGACTTGCCATTGTCAACAGCTTTTTATAAACTTGTCCTTGGGCAGGAGCTTGATTTACATGATATAAGGTCCTTTGATGCTCAACTTGGATCAACTCTGCAAGAAATGGAAGCTCTAGTCCACCGTAAAAAATTCTTGGAGTCAATACCTGGCGATACAAAAGAGGCAATATCAAATTTATCTTATCGTGGTGCAAGAGTTGAAGATCTTTGTATTGATTTCACTCTTCCTGGTTTCCCTGATTATCCTCTCAAACCAGATGGGAACAACATTTTGGTTAACATTGATAATGTGGAAGAATACGTGTCATTAGTTGTGGATGCAACTATCAAAATAGGAGTCATGTCACAAATAGAAGCCTTCCGAACAGGATTCAATCAGGTGCTTCCCCTCTCATCCTTGCAAATATTTACTGAAAATGAGCTTGATTATCTTTTCTGTGGTGTGCGTAACTTGTGGGTGGCTGAAACACTTACTGATTACGTCAAATTTGATCATGGATATACGGCTCAAAGCCCTCCAATTTTAAATCTTCTTGAAATCATGGCAGAGTTCACCCCTTCACAGCAGCAAGCATTTTTGCAGTTTATTACTGGTTGCCCAAGGCTTCCTCCTGGAGGGTTGGGTGCTCTGAACCCAAAGTTGACTGTTGTTCGGAAGAATTTTTCAGGAGCAATCGGAGATCCGAATTCACAAAGAACAATGGATGCAGAATTGCCGAGTGTTATGACTTGTGCAAATTACCTCAAACTTCCTCCATACTCATCCAAGGAGGTAATGCGTGATAGGCTGTTATATGCCATCACTGAAGGGCAAGGTTCTTTTGACCTCTCGTGAGTTTCGTATGTAGAAGAAAAGTCCAGTATCCTTTCGTTCAAAAGCATGTGATATAATCTACATTTTTCGACTCTTTAAGCACCAAATTCTGGCAAATGGTGAAATCCATGACATGTAAATATCTGTAATACTTGATCGCAATTTGATCTGCTTACCACTCTGCAATTGTTGTTGACTAAGCATGCAACAGGATGCCTGAGGCTTCTCTTCCTTTCACCTACTATGCTAGTAGCAGGGAATTCAATTTGGCATATTATATAGTACGCCATAGAAGTGAATGGCTATTACCTGATTTAACATCAGTTCAATTTGTTAGTGCAAAGAGTATTCAGTCGAGCCTGTTATATCTTATGGAAAAAAATTTCTCACCTGGTTAGCATCACTGCAATTGGAAATTACAAATGCCAGGGCTGGAGAACCTGGTGATGCTTTCTCTAATCGTGCCTAGATCATGGTTGTATTCATTATATCAATCATTGAATTATCCATTTCGTCTTTTATAATTATGATGTAAAGCTTTGAATTATCTATTTCGTCTAATATCTTAGAGAATGGTCATCTCAGATTTCTAATATTCAAATCTTGACAAGAGAAGTGGGTGCACATTATACCTGTGCTTTAGCAAATATA

Ace file of the UniGene sp_v3.0_unigene2592

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to KAK (KAKTUS) isoform 1 n=2 Tax=Vitis vinifera RepID=UPI0001982DD6	-	-	0.0	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%
Sma3	Putative HECT ubiquitin-protein ligase 3	-	-	1.023e-08	-

Source	Gene names
Sma3	At4g38600; At4g38600/At4g38610; B1370C05.20; CHLREDRAFT_113116; F20M13.160/F20M13.170; GSVIVT00023059001; GSVIVT00036114001; GSVIVT00036737001; KAK; MICPUN_83330; OJ1280_A04.10; OJ1435_F07.10; OJ1729_E02.3; OSTLU_39499; Os02g0101700; Os05g0122400; Os05g04

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	acid-amino acid ligase activity	GO:0016881	Molecular Function	-
Sma3	protein modification process	GO:0006464	Biological Process	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-
Sma3	trichome branching	GO:0010091	Biological Process	-
Sma3	modification-dependent protein catabolic process	GO:0019941	Biological Process	-
Sma3	DNA endoreduplication	GO:0042023	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	HEAT	IPR000357	-	-
Sma3	HECT	IPR000569	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G38600.1	" KAK, UPL3 HEAT repeat ;HECT-domain (ubiquitin-transferase) chr4:18041503-18049292 REVERSE LENGTH=1888"	49%
RefSeq	Arabidopsis thaliana	NP_849567.2	E3 ubiquitin-protein ligase UPL3 [Arabidopsis thaliana]	49%
RefSeq	Populus trichocarpa	XP_002305516.1	predicted protein, partial [Populus trichocarpa]	58%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKY6

Fln msg: your sequence is longer than subject: 898 - 656

Fln protein: MNPLASFADLEDLLWSKVQTNETETRCHSGEVQPGSTSVSTPSQTIPAQAAEGRPSTRSKSLTVLGSTTNAMDSAHLKASKEKGKSISRNVIDDFRGPETRSAARRKATMDSYSQVKQQNGESSDEDEDHDFTPVEIGEAIPMEEDYSSEEDGEEDDEEDEIYLAERVHEAELGYPSYSSAFASRTATTAAMTGHASTSAKGAIRSRDHRTVSNRRNANVCPRLNFFIGGKQLDRSSTLYQAIMHHTVLDGYEQRYAGSDYSGYDSRRFWDEVYTITYQSTDATAKMDLTGTSKMYCTPKNTEHMSLLDSILQRKLPCDLDKSNSTYKILLLLRIIEGLNRLAPSLRAQASSDAFAEGKLTNLDELKVNGPVVPQEEFLSSKLTPKLTRQMQDALALCSGSMPPWCQELTKACPFLFPFETRRQYFYSTALGLSRALQYFQQQQSAENSNLVNNRGRNVVRLERQKVRVSRRRILDSAVKVMEMFCSGQKAVLEVEYFGEVGTGLGPTLEFYTLVSQELQRSTLGMWRTNSSPKEVVESDVLMPDAEEDHLSLSATKNNTHRGHTEQSGWFVQAPLGLFPRPFPSNTDCSNGSGFSKVRDNFCLLGRLMAKALQDGRLLDLPLSTAFYKLVLGQELDLHDIRSFDAQLGSTLQEMEALVHRKKFLESIPGDTKEAISNLSYRGARVEDLCIDFTLPGFPDYPLKPDGNNILVNIDNVEEYVSLVVDATIKIGVMSQIEAFRTGFNQVLPLSSLQIFTENELDYLFCGVRNLWVAETLTDYVKFDHGYTAQSPPILNLLEIMAEFTPSQQQAFLQFITGCPRLPPGGLGALNPKLTVVRKNFSGAIGDPNSQRTMDAELPSVMTCANYLKLPPYSSKEVMRDRLLYAITEGQGSFDLS*

Protein Length: 899

Fln nts: TGAGCTGGTTTTGAACCATATTCCAAATTCACACAGTGCTAATACTAGCATTTCATCAGTATTAAATGCATTATCAAAGCCTTTAAAACTACGTCTTTGTAGAGCACAAGGAGAAAAGTCTCTTCGTGATCACTCAAGTGTTCTATTT_-_ATGAACCCTTTGGCTAGTTTTGCTGATCTTGAAGATCTACTTTGGTCCAAAGTTCAGACAAATGAAACTGAAACCAGATGTCATAGTGGTGAAGTGCAACCTGGTTCCACATCTGTATCAACACCATCTCAAACAATACCTGCACAAGCTGCTGAGGGTCGGCCTTCAACAAGATCAAAATCATTGACAGTATTGGGAAGCACTACAAATGCCATGGACTCTGCACATTTGAAAGCATCAAAGGAAAAGGGCAAATCCATCTCAAGGAATGTCATTGATGATTTCAGGGGCCCAGAAACAAGGAGTGCAGCACGGAGAAAAGCAACAATGGACAGCTATTCACAAGTGAAGCAACAAAATGGAGAGTCTAGTGATGAGGATGAGGATCATGATTTCACTCCTGTTGAGATTGGAGAGGCTATACCTATGGAAGAAGATTACTCTTCCGAAGAGGACGGAGAAGAAGATGACGAAGAGGATGAAATTTACTTGGCTGAACGAGTGCATGAGGCAGAGTTGGGGTATCCATCATATTCCAGTGCATTTGCTTCAAGAACTGCAACAACTGCTGCTATGACTGGCCATGCATCTACCAGTGCCAAAGGAGCTATCAGAAGTAGAGACCACCGGACTGTTTCTAATCGTAGAAATGCAAATGTCTGTCCTCGATTGAACTTCTTTATTGGTGGGAAGCAGCTTGACAGGTCATCTACATTATACCAGGCAATTATGCATCATACAGTACTAGATGGATATGAGCAAAGGTATGCTGGTTCAGATTATTCTGGGTATGACAGTCGAAGATTTTGGGATGAAGTTTACACTATTACCTATCAAAGCACAGATGCAACAGCCAAGATGGATTTGACTGGAACATCCAAAATGTATTGTACACCTAAGAATACTGAGCATATGTCACTTCTAGATAGCATTTTGCAAAGAAAACTTCCCTGTGACTTGGACAAATCAAATAGCACATATAAGATTTTGTTGTTACTTCGAATAATAGAAGGACTCAACCGTTTAGCTCCTTCTTTGAGAGCTCAGGCCTCATCTGATGCTTTTGCAGAAGGAAAATTGACAAACCTAGATGAATTGAAAGTCAATGGCCCTGTTGTTCCCCAAGAAGAATTTTTAAGTAGCAAGCTTACACCAAAGCTGACACGCCAGATGCAAGATGCTCTGGCATTATGTAGTGGTAGTATGCCACCTTGGTGTCAAGAACTGACCAAAGCCTGTCCATTTCTGTTTCCATTTGAGACAAGGAGGCAATATTTTTATTCCACTGCATTAGGATTATCCCGTGCATTGCAGTACTTTCAGCAGCAGCAGAGTGCTGAAAATTCAAATTTGGTAAACAATCGTGGACGTAATGTTGTTAGACTGGAACGCCAAAAGGTTAGAGTCTCAAGACGGCGTATATTGGACTCAGCTGTGAAGGTGATGGAAATGTTCTGTTCTGGTCAGAAGGCTGTCCTTGAAGTTGAGTACTTTGGGGAGGTTGGCACTGGTCTAGGGCCAACTCTTGAGTTCTACACACTTGTTAGCCAGGAATTGCAAAGGAGTACACTAGGCATGTGGAGAACAAACTCATCACCTAAAGAAGTTGTAGAAAGCGATGTTCTGATGCCAGATGCTGAAGAAGATCATCTGTCGCTGTCAGCTACAAAGAATAACACACACCGTGGGCATACAGAACAAAGTGGATGGTTTGTTCAAGCACCTCTTGGCTTATTTCCTCGTCCATTTCCTTCTAATACGGATTGTTCAAATGGAAGTGGATTTTCCAAAGTGAGAGATAATTTTTGTCTTCTTGGACGTCTAATGGCAAAAGCTCTTCAAGATGGCCGGCTTCTAGACTTGCCATTGTCAACAGCTTTTTATAAACTTGTCCTTGGGCAGGAGCTTGATTTACATGATATAAGGTCCTTTGATGCTCAACTTGGATCAACTCTGCAAGAAATGGAAGCTCTAGTCCACCGTAAAAAATTCTTGGAGTCAATACCTGGCGATACAAAAGAGGCAATATCAAATTTATCTTATCGTGGTGCAAGAGTTGAAGATCTTTGTATTGATTTCACTCTTCCTGGTTTCCCTGATTATCCTCTCAAACCAGATGGGAACAACATTTTGGTTAACATTGATAATGTGGAAGAATACGTGTCATTAGTTGTGGATGCAACTATCAAAATAGGAGTCATGTCACAAATAGAAGCCTTCCGAACAGGATTCAATCAGGTGCTTCCCCTCTCATCCTTGCAAATATTTACTGAAAATGAGCTTGATTATCTTTTCTGTGGTGTGCGTAACTTGTGGGTGGCTGAAACACTTACTGATTACGTCAAATTTGATCATGGATATACGGCTCAAAGCCCTCCAATTTTAAATCTTCTTGAAATCATGGCAGAGTTCACCCCTTCACAGCAGCAAGCATTTTTGCAGTTTATTACTGGTTGCCCAAGGCTTCCTCCTGGAGGGTTGGGTGCTCTGAACCCAAAGTTGACTGTTGTTCGGAAGAATTTTTCAGGAGCAATCGGAGATCCGAATTCACAAAGAACAATGGATGCAGAATTGCCGAGTGTTATGACTTGTGCAAATTACCTCAAACTTCCTCCATACTCATCCAAGGAGGTAATGCGTGATAGGCTGTTATATGCCATCACTGAAGGGCAAGGTTCTTTTGACCTCTCGTGA___GTTTCGTATGTAGAAGAAAAGTCCAGTATCCTTTCGTTCAAAAGCATGTGATATAATCTACATTTTTCGACTCTTTAAGCACCAAATTCTGGCAAATGGTGAAATCCATGACATGTAAATATCTGTAATACTTGATCGCAATTTGATCTGCTTACCACTCTGCAATTGTTGTTGACTAAGCATGCAACAGGATGCCTGAGGCTTCTCTTCCTTTCACCTACTATGCTAGTAGCAGGGAATTCAATTTGGCATATTATATAGTACGCCATAGAAGTGAATGGCTATTACCTGATTTAACATCAGTTCAATTTGTTAGTGCAAAGAGTATTCAGTCGAGCCTGTTATATCTTATGGAAAAAAATTTCTCACCTGGTTAGCATCACTGCAATTGGAAATTACAAATGCCAGGGCTGGAGAACCTGGTGATGCTTTCTCTAATCGTGCCTAGATCATGGTTGTATTCATTATATCAATCATTGAATTATCCATTTCGTCTTTTATAATTATGATGTAAAGCTTTGAATTATCTATTTCGTCTAATATCTTAGAGAATGGTCATCTCAGATTTCTAATATTCAAATCTTGACAAGAGAAGTGGGTGCACATTATACCTGTGCTTTAGCAAATATA

Fln Alignment:

Contig2592___YAGSDYSGYDSRRFWDEVYTITYQSTDATAKMDLTGTSKMYCTPK--------------NTEHMSLLDSILQRKLPCDLDKSNSTYKILLLLRIIEGLNRLAPSLRAQASSDAFAEGKLTNLDELKVNGPVVPQEEFLSSKLTPKLTRQMQDALALCSGSMPPWCQELTKACPFLFPFETRRQYFYSTALGLSRALQYFQQQQSAEXXXXXXXXXXXXXXLERQKVRVSRRRILDSAVKVMEMFCSGQKAVLEVEYFGEVGTGLGPTLEFYTLVSQELQRSTLGMWRTNSSPKEV-VESDVLMPDAEEDHLSLSATKNNTHRGHTEQSGWFVQAPLGLFPRPFPSNTDCSNGSGFSKVRDNFCLLGRLMAKALQDGRLLDLPLSTAFYKLVLGQELDLHDIRSFDAQLGSTLQEMEALVHRKKFLESIPGDTKEAISNLSYRGARVEDLCIDFTLPGFPDYPLKPDGNNILVNIDNVEEYVSLVVDATIKIGVMSQIEAFRTGFNQVLPLSSLQIFTENELDYLFCGVRNLWVAETLTDYVKFDHGYTAQSPPILNLLEIMAEFTPSQQQAFLQFITGCPRLPPGGLGALNPKLTVVRKNFSGAIGD-PNSQRTMDAELPSVMTCANYLKLPPYSSKEVMRDRLLYAITEGQGSFDLS
B8LKY6______________YTGLEHSPVEGRRLWDEVYNITYQRIAAPEEKDIAGESAGSSSPRPLKNSTTSSSRLQTSWERLSFLDSILQGELPCDLEKSNCTYDILLLLRVLECLNQLSPRLRALEASDAFAEGKIINFQELKVKGPVVPQKQFLSSKLTPKLARQMQDPLAVFSGGLPSWCNQLTKACPFLFPFETRRQYFYSASFGLSRALQRLQQQQSAENSNLNNNLEVRVGRVQRQKVRVYRHRILDSAMKVMEIYGS-HKAVLEVEYFGEVGTGLGPTLEFYTLLSHELQKKVLGMWRSGSCSKEAAVAENVEMWDVEQHGAFLHT--NEVSKIPTVETEEFVQSPQGLFPRPWPPNADSLQGSQFSKAINYFHLLGQVMAKALQDGRLLDLPLSTAFYKLVLMQELDLFDIQSFDRELGTTLQEMDAFVRRKQFLESLDDDNGKALSDLLFHNARIDDLFLDFTLPGYPDYVLKSEGNNIMVHIDNLEEYISLVVDATVKTGIMPQMEAFRAGFNQVFSLSSLQIFTESELESLLCGGRELWAAQSLVDQIKFDHGYTSNSPSIVNLLEILGEFTPEQQGAFLRFVTGAPRLPPGGLAALNPKLTIVRKHSTGANGGIKGTAQATDRDLPSVMTCANYLKLPPYSCKEVMRERLMYAITEGQGSFDLS

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
2794	14		85		0.993533
2796	14			85	0.993533
2797			85	14	0.993533
2851		16		83	0.994512
2854	83	16			0.994512
2856	83			16	0.994512
2860	83	16			0.994512
2861	83	16			0.994512
2862	83			16	0.994512
2863			83	16	0.994512
2864			16	83	0.994512
2865		83	16		0.994512
2867	83			16	0.994512
2873	16	83			0.994512
2889	16			83	0.994512
2890		16	83		0.994512
2892			83	16	0.994512
3195	11		88		0.923564
3236	90	10			0.90298
3359		87		12	0.992554

SSRs (tot: 1)

Start position	End position	Sequence	Length
1469	1480	CAG CAG CAG CAG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain