SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2565

Length: 1584 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene2565

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative sphingolipid delta 4 desaturase DES-1 n=1 Tax=Solanum lycopersicum RepID=Q8S459_SOLLC	-	-	75%
FL-Next	tr=Putative sphingolipid delta 4 desaturase DES-1; Solanum lycopersicum (Tomato) (Lycopersicon esculentum).	-	-	75%
Sma3	Putative sphingolipid delta 4 desaturase DES-1	-	-	-

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	GO:0016705	Molecular Function	-
Sma3	fatty acid biosynthetic process	GO:0006633	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Fatty acid desaturase, type 1	IPR005804	-	-
Sma3	Sphingolipid delta4-desaturase	IPR011388	-	-
Sma3	Sphingolipid delta4-desaturase, N-terminal	IPR013866	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G04930.1	DES-1-LIKE fatty acid desaturase family protein chr4:2509236-2510918 FORWARD LENGTH=332	71%
RefSeq	Arabidopsis thaliana	NP_192402.1	sphingolipid delta-4 desaturase [Arabidopsis thaliana]	71%
RefSeq	Populus trichocarpa	XP_002329769.1	predicted protein [Populus trichocarpa]	73%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: Q8S459

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: MTMAAMGNDFFWVETDEPHASRRREILAVHPEIKELFGPDSWAFPKIVAAVGIQIWAATLLNDASLLQITVVAYFFGSFLNHNLFLAIHELSHNLAFSTPIYNRLLGIFANLPIGVPMSVTFQKYHLEHHRYQGVDGIDMDIPSYTEGHVVSNTFCKMLWVLLQLFFYAFRPLVLNPKPPGLWEASNFLVQLTFDATLLYFCGWKSFAYLILATFLGGGMHPMAGHFISEHYVFQKGQETYSYYGPLNMLTWSVGYHNEHHDFPRIPGRKLHKVKKIAPEFYEGFSYYKSWSQVIYMYIMDHTVWAFQQDKKENPFKWT*

Protein Length: 321

Fln nts: ATTTTAATGCATTGACACCGCCCAATACGGTTGCAGAGCAGAACCAAGATCATGGGGTATAGTCGAAGACTTTTGCATTGATGTATATTTTAATGCATTGACACCGCCCAATACGGTTGCAGAGCAGAGCCAGCACATTGGTGTTTTAAGATACGGCGGCCTGGTTCGCTTTTCAACCGCCAAGTGCCACCAAAGTAAGGTACCTTGCACTAACCAGAATGAAACATGCAACACGCAGCGAGCAGTCTCGTTAGAAATCCTCGTGCATGATTGGTACTGATTTTCAGATCTGATTCGTGATATCTGAATCGC_-_ATGACAATGGCTGCAATGGGGAATGATTTTTTTTGGGTAGAGACTGATGAACCCCACGCGAGTCGCAGGAGGGAAATACTGGCCGTCCATCCTGAGATCAAGGAGTTGTTTGGACCCGATTCATGGGCTTTTCCAAAGATTGTCGCAGCTGTTGGCATTCAAATATGGGCTGCTACATTGCTGAATGATGCAAGCTTGTTACAGATTACTGTTGTGGCATATTTCTTTGGGTCGTTTTTGAATCATAATCTGTTTCTAGCAATACATGAGCTTAGCCACAATTTAGCTTTTTCAACACCTATCTATAATCGTCTGTTAGGTATTTTTGCTAACCTTCCAATTGGTGTTCCCATGTCCGTTACTTTTCAAAAGTATCATCTAGAGCACCACAGGTACCAAGGAGTTGATGGGATTGACATGGACATTCCCAGTTACACAGAGGGGCACGTGGTTTCAAATACATTTTGCAAAATGTTGTGGGTTTTACTTCAGCTTTTTTTCTATGCCTTTAGGCCATTGGTTTTGAATCCCAAGCCTCCTGGCCTTTGGGAGGCAAGCAATTTTTTAGTGCAACTAACCTTTGATGCAACTCTTTTATACTTCTGTGGTTGGAAGTCCTTTGCATACCTTATTTTGGCAACATTTCTGGGTGGGGGAATGCATCCTATGGCTGGGCATTTCATTTCAGAGCATTATGTCTTCCAAAAAGGACAAGAGACTTACTCATACTACGGGCCTTTGAACATGTTAACATGGAGTGTTGGATACCACAATGAACACCATGACTTTCCAAGGATTCCTGGTAGAAAGCTTCATAAAGTGAAGAAGATAGCACCTGAGTTTTATGAAGGATTTAGTTATTATAAATCATGGTCACAAGTAATTTATATGTATATTATGGATCACACTGTTTGGGCCTTTCAGCAGGATAAAAAGGAAAACCCATTCAAGTGGACATGAGAAGAAGGATTAACATTTACTTCCTATCTTTTGCAATATAACAAGTGGATGTGGGAAGAAGGATTGATGTTTACATCCTACCTTTTGTTGTTGTATTGAAGTGGATGTGAGAAGGATTGACATTTACTTCCCACCTTTTTTTGTAGTGATTCTTTTGGTTCTCCTCAATTCATTTTTGGAGGCATATGGCAGTCAGGATTCTTTGGTTGATTCTAGAAGTTTTGTTATTGAGACATTGTTCAGACAGTGGGTCCTTGTTACTGCATTATGTCAATTATAGTTCCTTTTTTTCTATAAACGTTAAAAAATTGT

Fln Alignment:

Contig2565___MGNDFFWVETDEPHASRRREILAVHPEIKELFGPDSWAFPKIVAAVGIQIWAATLLNDASLLQITVVAYFFGSFLNHNLFLAIHELSHNLAFSTPIYNRLLGIFANLPIGVPMSVTFQKYHLEHHRYQGVDGIDMDIPSYTEGHVVSNTFCKMLWVLLQLFFYAFRPLVLNPKPPGLWEASNFLVQLTFDATLLYFCGWKSFAYLILATFLGGGMHPMAGHFISEHYVFQKGQETYSYYGPLNMLTWSVGYHNEHHDFPRIPGRKLHKVKKIAPEFYEGFSYYKSWSQVIYMYIMDHTVWAFQQDKKE
Q8S459______________MANDFFWSYTDEPHASRRRQILSQYPQIKQLFGPDPFAFLKISGVVLLQLWTATFLHDATWLKILIVAYFFGSFLNHNLFLAIHELSHNLAFSTPTYNRWLGIFANLPVGVPMSVTFQKYHLEHHRFQGVDGIDMDIPSQTEAHVVKNVLAKSIWVILQLFFYAFRPLFLKPKPPGLWEFINFTIQLSLDGAMVYFWGWKSLAYLILSTFVGGGMHPMAGHFISEHYVFKPEQETYSYYGPLNLMTWSVGYHNEHHDFPRIPGSKLYKVKEIAPEYYENLDAYKSWSQVIYMYIMDRTVGPFSRMKRK

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
604	16			83	0.994512
605	16			83	0.994512
607		83	16		0.994512
608	83			16	0.994512
849		88		11	0.923564
992		14		85	0.993533
1019	75	25			0.996473
1021	75			25	0.996473
1022	75			25	0.996473
1030	80	20			0.995493
1032	80			20	0.995493
1035			20	80	0.995493
1040	80			20	0.995493
1042	80		20		0.995493
1045	80			20	0.995493
1047	20		80		0.995493
1048		20	80		0.995493
1049			80	20	0.995493
1051	20	80			0.995493
1244			20	80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain