SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2556

Length: 1319 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene2556

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATP-binding cassette transporter, subfamily C, member 4, SmABCC4 n=2 Tax=Selaginella moellendorffii RepID=D8RHJ5_SELML	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	59%
Sma3	Multidrug resistance protein ABC transporter family	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	2-alkenal reductase.	EC:1.3.1.74	-	3.41e-10	-
Sma3	Xenobiotic-transporting ATPase.	EC:3.6.3.44	-	6.148e-37	-

Source	Gene names
Sma3	At1g04120; At1g30400; At1g30410; At1g30420; At2g07680; At2g34660; At2g47800; At3g13080; At3g13090; At3g13100; At3g21250; At3g59140; At3g60160; At3g60970; At3g62700; B1065G12.13; B1157F09.14; CHLREDRAFT_119551; CHLREDRAFT_134058; CHLREDRAFT_141872; CHLREDR

Source	GOs	Term	Type	Identity
Sma3	plant-type vacuole	GO:0000325	Cellular Component	-
Sma3	vacuolar membrane	GO:0005774	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	calmodulin binding	GO:0005516	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sulfonylurea receptor activity	GO:0008281	Molecular Function	-
Sma3	folic acid transporter activity	GO:0008517	Molecular Function	-
Sma3	xenobiotic-transporting ATPase activity	GO:0008559	Molecular Function	-
Sma3	chlorophyll catabolite transmembrane transporter activity	GO:0010290	Molecular Function	-
Sma3	glutathione S-conjugate-exporting ATPase activity	GO:0015431	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	ATPase activity, coupled to transmembrane movement of substances	GO:0042626	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	response to nematode	GO:0009624	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	stomatal movement	GO:0010118	Biological Process	-
Sma3	cellular potassium ion homeostasis	GO:0030007	Biological Process	-
Sma3	response to other organism	GO:0051707	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Neuraxin/MAP1B repeat	IPR000102	-	-
Sma3	Aminotransferase, class V/Cysteine desulfurase	IPR000192	-	-
Sma3	Histidine phosphatase superfamily, clade-2	IPR000560	-	-
Sma3	Serine/threonine dehydratase, pyridoxal-phosphate-binding site	IPR000634	-	-
Sma3	ABC transporter, transmembrane domain	IPR001140	-	-
Sma3	Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p	IPR001678	-	-
Sma3	Proteinase inhibitor I3, Kunitz legume	IPR002160	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	ABC transporter, integral membrane type 1	IPR017940	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	Hemopexin/matrixin, conserved site	IPR018486	-	-
Sma3	Cyclic nucleotide-binding, conserved site	IPR018488	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G62700.1	ATMRP10, MRP10, ABCC14 multidrug resistance-associated protein 10 chr3:23190428-23195727 REVERSE LENGTH=1539	59%
RefSeq	Arabidopsis thaliana	NP_191829.1	ABC transporter C family member 14 [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002321011.1	multidrug resistance protein ABC transporter family [Populus trichocarpa]	58%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NSU0

Fln msg: your sequence is longer than subject: 337 - 131

Fln protein: MILCSSALLLVFLPKSIIQPEFVGLSLSYSLALNGCLLSLVYCICYIEQSMVAVERILQYCRIPSEAPLVLQNKHPEIEKGWPIQGSISVEHLQLRYLPNAPLVLKDVTFSVNGGEKLGVVGRTGSGKSSLVLALFRIVEAAAGKIIIDGIDISTVGLNVLRLKLSIIPQEPALFEGTIRHNLDPLCVHTDQEIWESLEKCLLADVISQKEEKLDTLVSEKGENFSMGQRQLICLGRVLLRRSRILILDEATASVDTQTDLLLQNTIKTEFADCTVISIAHRIPTVMGCDKVVVLDEGQVKEFGSPTLLLEQPSSLFKSLVTEYWSRSKSPHNGAI*

Protein Length: 338

Fln nts: TCGAATTTCATAATATTGCTGCCAATGAATGGTTTGGCTTCCGTATTGAGAGTATTGGTACC_-_ATGATACTTTGCTCATCTGCATTACTGTTGGTTTTCCTCCCAAAAAGCATCATACAACCTGAATTTGTGGGGCTTTCCCTCTCATATAGTCTTGCACTCAATGGTTGCCTTTTATCCCTAGTGTACTGCATCTGTTATATTGAACAAAGCATGGTAGCAGTAGAAAGAATATTGCAGTATTGTAGGATTCCAAGTGAAGCTCCACTCGTACTGCAAAATAAGCACCCTGAAATTGAAAAGGGTTGGCCAATCCAAGGAAGCATTTCTGTGGAACATTTGCAGTTAAGATACCTCCCAAATGCACCACTTGTATTGAAGGATGTTACATTCTCTGTTAATGGAGGGGAAAAACTTGGAGTAGTGGGAAGGACGGGCAGTGGAAAATCTTCTCTTGTCTTGGCTCTTTTTCGAATAGTTGAGGCTGCTGCAGGAAAAATAATCATTGATGGGATCGATATTAGTACGGTTGGCCTAAATGTATTGCGGTTGAAGCTCAGCATCATTCCTCAAGAACCAGCTCTATTTGAAGGAACAATCAGACATAACTTAGATCCACTATGTGTGCACACAGATCAAGAGATATGGGAGTCATTGGAGAAATGCCTGCTAGCTGATGTGATTTCTCAAAAGGAAGAAAAGCTGGATACTCTTGTTTCTGAAAAGGGAGAGAACTTTAGCATGGGACAAAGGCAACTTATTTGTCTTGGTCGGGTTCTTTTAAGAAGGAGTCGTATCCTCATTCTTGATGAGGCAACTGCATCAGTTGATACTCAAACAGATTTATTGTTGCAGAATACAATCAAGACTGAGTTTGCAGACTGTACAGTTATAAGTATTGCACATAGAATACCAACCGTAATGGGCTGTGACAAAGTTGTTGTCTTGGATGAAGGGCAAGTAAAGGAGTTTGGATCACCTACATTGCTGCTTGAACAACCTTCTTCGCTATTTAAATCACTTGTTACTGAATATTGGAGTCGTTCAAAGAGTCCTCATAATGGAGCTATATAA___ACTTTAAAGAGACATCTCCATGTGAATAATAAGAAATTGTGGATATTATTTGCATTGAGGAAAATTATATTTTTACATGTTACAAATTTGTTACATTTCATGTGCTCCTGAATCAACTTATAATGAGAAATATGTATAATATATCCTAAATGATTACATTTAGGACTAAGTGTCAATGACACTTTTGCAAGTTTAAAGGAAGGGATTCATCTCAATATGAATATATTATGTTAAACATGTATACAG

Fln Alignment:

Contig2556___ISQKEEKLDTLVSEKGENFSMGQRQLICXXXXXXXXXXXXXXDEATASVDTQTDLLLQNTIKTEFADCTVISIAHRIPTVMGCDKVVVLDEGQVKEFGSPTLLLEQPSSLFKSLVTEYWS
A9NSU0______________IEDLPNQLDSSVSDEGENWSAGQRQLLCLGRVLLRRNRILVLDEATASIDSATDALLQKVIRHEFSNCTVITIAHRVPTVIDSDMVLTLSDGKLAEYDNPAKLMENKSSLFAKLVAEYWS

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
395		66		33	0.997452
426	33		66		0.997452
435	33		66		0.997452
471		25		75	0.996473
510		25		75	0.996473
527		25		75	0.996473
539	75		25		0.996473
579	25		75		0.996473
638	85		14		0.993533
639	85		14		0.993533
662	28		71		1.0
667		28		71	1.0
690	85		14		0.993533
741		42		57	1.0
748		71	28		1.0
786	75		25		1.0
810		28		71	1.0
882		73		26	1.0
897		13		86	0.999973
953	72	27			1.0
978	87	12			0.992554
982	87		12		0.992554
988		66		33	1.0
1008	16		83		0.994512
1087		60		40	1.0
1262		87	12		0.992554
1293		16	83		0.994512
1310		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain