SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2541

Length: 1914 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene2541

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Nitrate and chloride transporter n=1 Tax=Glycine max RepID=Q535K6_SOYBN	-	-	0.0	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	32%
Sma3	Nodulin family protein, putative, expressed	-	-	5.351e-17	-

Source	Gene names
Sma3	AT4G34950; At2g28120; At2g28120/F24D13.9; At2g39210; GSVIVT00000612001; GSVIVT00012484001; GSVIVT00012949001; GSVIVT00018121001; GSVIVT00018122001; GSVIVT00018123001; GSVIVT00018125001; GSVIVT00018126001; GSVIVT00018127001; GSVIVT00022162001; LOC_Os03g478

Source	GOs	Term	Type	Identity
Sma3	microtubule	GO:0005874	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	protein complex	GO:0043234	Cellular Component	-
Sma3	structural molecule activity	GO:0005198	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	microtubule-based movement	GO:0007018	Biological Process	-
Sma3	protein polymerization	GO:0051258	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Lipocalin	IPR002345	-	-
Sma3	Alpha tubulin	IPR002452	-	-
Sma3	Tubulin/FtsZ, GTPase domain	IPR003008	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Nodulin-like	IPR010658	-	-
Sma3	Major facilitator superfamily	IPR011701	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G39210.1	Major facilitator superfamily protein chr2:16366287-16368231 REVERSE LENGTH=601	53%
RefSeq	Arabidopsis thaliana	NP_181454.1	major facilitator protein [Arabidopsis thaliana]	53%
RefSeq	Populus trichocarpa	XP_002326206.1	predicted protein, partial [Populus trichocarpa]	51%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRH5

Fln msg: No stop codon before M and low homology subject,

Fln protein: MEGKEVFDLAKRVATGRWFVVFVSFLIMSFAGGTYLFGLYSQAIKTSLGYDQSTLDTLGFFKDLGANVGIVSGLINEVCPTWVVLGVGAIMNIVGYSLVWLSVTRRITKPKLWQMYLYMTVGANSQTFASTGSLVTCVKNFPQSRGVVMGIVKGFAGLSGAIFTQIYLAVYGSSASGSAGVILLLGYLPTAVSLIVMFIVRPTKEVTEENELKRFYHFLYIGLGLAGFLMVLIVVEHLQKNFPNAGYRIVVAVIVVFLSLPLVVIAKAEMDKKKQQQISSESSTSTVEIEAADHAKISVFTTEAEEKKNPQHYRDIDEGKSTTSSTEYITNHSNEVRVRASVVSRIVNFFKSPKRGDDFTIPQALVSIDMLILFVATTCGLGSTLTAIDNMGQIGKALGYNDTTISTFVGLISIWNFLGRVVAGFLSEILLQKYRFPRPLMLTIVMFIACIGHILIAFALPGSLYLASIIIGLCFGAQLPVVFAIISELFGLKYYATLYNFGAVSSPLGSYLLSVKVVGHLYDQETRKQCTALGTCSAQRAVTCIGHKCFRLSFIIMTLVTVFGGLISLVLVWRTRKFYRGDIYAKFKKLEDTSSQIIEKADRDTERRNV*

Protein Length: 612

Fln nts: AAC_-_ATGGAGGGGAAGGAGGTGTTTGATTTGGCTAAAAGAGTGGCCACTGGAAGATGGTTTGTAGTATTCGTGTCGTTCCTTATTATGTCATTCGCTGGTGGAACTTATTTGTTTGGGCTTTACTCACAAGCAATAAAGACTTCCCTGGGATATGATCAGAGCACACTCGATACCTTGGGATTTTTCAAAGATCTGGGTGCTAATGTTGGGATTGTTTCAGGTCTCATCAATGAAGTCTGTCCTACATGGGTTGTTCTTGGAGTTGGCGCTATCATGAATATCGTTGGGTATTCATTGGTTTGGTTGTCTGTCACGCGACGAATTACCAAGCCGAAGTTATGGCAGATGTATCTGTATATGACCGTGGGAGCTAATTCTCAGACATTTGCCAGCACAGGATCTCTGGTTACCTGTGTTAAGAATTTCCCTCAGAGCCGAGGAGTTGTGATGGGGATTGTGAAAGGATTTGCGGGTTTGAGTGGAGCAATTTTCACTCAGATTTATCTTGCAGTCTATGGGAGTAGTGCCAGTGGATCTGCCGGTGTGATTCTGCTTCTTGGCTACTTGCCCACTGCTGTTTCTCTGATTGTCATGTTTATAGTTCGTCCTACAAAGGAGGTCACGGAAGAAAATGAGCTGAAGCGATTCTACCATTTTCTCTACATAGGTCTAGGATTAGCGGGGTTTCTGATGGTTCTCATCGTAGTCGAGCATTTGCAAAAGAATTTCCCAAATGCAGGCTACAGAATTGTTGTTGCAGTAATCGTGGTTTTCCTTTCGCTTCCTCTTGTGGTGATTGCTAAGGCAGAGATGGACAAAAAGAAGCAGCAACAGATTTCCAGCGAAAGCTCAACCTCAACCGTTGAAATTGAAGCTGCCGATCATGCCAAAATCAGTGTGTTTACAACAGAAGCTGAAGAGAAGAAAAATCCCCAACATTACCGAGACATCGATGAAGGAAAGTCGACGACCAGCAGCACAGAGTACATTACTAATCATAGCAATGAAGTAAGAGTGAGAGCTTCTGTTGTATCCCGTATTGTGAATTTTTTCAAAAGCCCTAAAAGAGGAGACGACTTCACAATTCCTCAAGCTCTAGTAAGTATCGATATGCTGATCCTGTTTGTAGCCACTACTTGTGGGCTTGGATCAACTCTGACCGCCATTGACAATATGGGACAGATTGGGAAAGCTCTTGGATATAACGACACGACTATAAGCACCTTTGTTGGGCTTATTAGCATATGGAATTTTCTAGGTCGTGTTGTTGCTGGCTTTTTATCAGAAATCCTTCTTCAGAAGTATAGATTCCCCAGGCCCCTGATGTTGACCATAGTTATGTTTATTGCTTGCATTGGGCATATTTTGATAGCCTTTGCTCTTCCGGGTTCACTGTACTTAGCATCCATTATAATTGGACTGTGTTTTGGAGCTCAGTTGCCTGTAGTGTTTGCTATCATCTCAGAGTTATTTGGTCTCAAGTATTATGCCACTCTGTATAATTTTGGAGCTGTTTCAAGCCCCTTGGGATCTTATCTTTTGTCTGTGAAAGTTGTGGGACATTTATACGACCAAGAGACAAGAAAGCAGTGCACTGCTCTGGGGACTTGTTCGGCTCAGAGGGCTGTTACTTGCATTGGGCATAAATGTTTTCGGCTTTCGTTTATCATCATGACCCTCGTGACCGTTTTTGGAGGTCTGATTTCGCTCGTTCTGGTCTGGAGAACGAGGAAGTTCTATCGAGGCGATATTTATGCCAAGTTTAAAAAGCTAGAGGACACATCATCCCAAATTATTGAGAAAGCGGATCGCGATACTGAGAGGAGAAATGTGTAGATGGTCAATATTGAAATTCAGTGAGCAGCAATAGATGTAATTAAGGGTATAAAAATTATGAATGATTCCTTTTACCAT

Fln Alignment:

Contig2541___RWFVVFVSFLIMSFAGGTYLFGLYSQAIKTSLGYDQSTLDTLGFFKDLGANVGIVSGLINEVCPTWVVLGVGAIMNIVGYSLVWLSVTRRITKPKLWQMYLYMTVGANSQTFASTGSLVTCVKNFPQSRGVVMGIVKGFAGLSGAIFTQIXXXXXXXXXXXXXXXXXXXXYLPTAVSLIVMFIVRPTK----EVTEENELKRFYHFLYIGLGLAGFLMVL-IVVEH---LQKNFPNAGYRIVVAVIVVFLSLPLVVIAKAEMDXXXXXXXXXXXXXXXXXXXAADHAKISVFTT--EAEEKKNPQHYRDIDEGKSTT----------------SSTEYITNHXXXXXXXXXXXXXXXNFFKSPKRGDDFTIPQALVSIDMLILFVATTCGLGSTLTAIDNMGQIGKALGYNDTTISTFVGLISIWNFLGRVVAGFLSEILLQKYRFPRPLMLTIVMFIACIGHILIAFALPGSLYLASIIIGLCFGAQLPVVFAIISELFGLKYYATLYNFGAVSSPLGSYLLSVKVVGHLYDQETRKQ-----------CTALGTCSAQRAVTCIGHKCFRLSFIIMTLVTVFGGLISLVLVWRTRKFY
B8LRH5______________KWVGFVTAIWVQAIAGNNYTFSNYSVALKSILDVNQVQLNNLSVAKDVGKAFGLVAGFASDYLPAWLILLIGSLEGFLGYGAQWLVLSQRIRPLPYWQMCIFLCMGGNSTTWMNTAVLVTCMRNFRRNRGPVVGILKGYIGLSTAIFTDLCSALFASSPSSFVLMLTL---IPGIVCVTSMIFLRPVPCSADEREEKEEAQSFSTFNVIAITVAVYLLAFDITGKHGIVLSRTF--AGFLLVLLAAPLVVPLKLFIKEKNSRGEQLIPSFWKWKSANTQFLDIEKQVREPLLTNVEEAKGAENPETSVQAKAESIATEPRPSQSESVATEPWPSQSESVTTEPRPSQSESVENQIVCN--SKPRIGEDHTIFQAIQKFDFWLLFFAFLCGVGTGMAVINNMGQIGLAMGFVD--VSMFVSLISIWGFFGRIGAGSISEHFIRKAGVPRPVWMAASQLFMIVGYIFMAIGMPGSLYLGSIVVGVCYGVRLSISVPTASELFGLKYYGMIYNFLILNLPIGSFLFSGLLAGILYDIEAAKSHKVNARPYPVLLSGIYPSELEDSNNCVGAHCYRLVFLVMAGVCLLGFGLDVLLSFRTRNLY

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1267	33		66		0.997452
1308	66		33		0.997452
1311		66		33	0.997452
1333	66		33		0.997452
1356		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain