SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2520

Length: 2990 nt

UniGene Fasta

>sp_v3.0_unigene2520
CTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGAGCAGGCCTGGATTGATTGAAGGAATGAAGCTCAAACCACCGAAAAATAAGAAGGTTTCCTGAAAGCTCCTAGACGCTGAAAATCTAAACGGGGCAACAACGTCTGTACAAACCAAGCCGTCTGAAATTCTGCGTCTGTTGATAGGAAAAGGCGGCCAAATGGAAGGTACTGCTTCTTCAGCCATGAGAATGAGAGGTGCACACAGCGCAAGAAGTCCTGAGATACGCTTCCTTACTTACCAGGGACTCAAACCCACTGGGACAGTAGCAGTTCCTCTTAACGCACGTTTCCATGCGAACCCGATTTCTGCTGCCAACGTTCTTACGAGGGCTGTTGCCGCTCCAGTCAAGCCACCTGCAACACCACAGACTAAGCGCAGCAAGGTTGAAATTATTAAGGAACAGAGTAACTATTTACGGTATCCTTTAAATGAAGAGTTACAGACAGAAGCACCAAATATCAATGAGGCTGCAACACAGCTGATTAAATTTCATGGAAGCTATCAGCAAGACAACAGAGATGAGCGCTTTAAAGGAGGCAAGTCTTATCAGTTCATGCTTCGAACGAAGAACCCGGCAGGGAAAGTTCCATATAAACTCTACTTGGCAATGGATGATCTTGCAGATGAGTTTGGGATTGGAAGTCTTCGACTTACGACAAGACAGACATTTCAACTTCATGGCGTGCTTAAGAAGGATCTGAAGACAGTTATGAGTACCATCATCAGAAATATGGGATCCACACTTGGAGCATGTGGTGACTTGAATAGAAATGTTCTAGCTCCTGCAGCACCATATTTGACTAGAAAAGATTATTTATTTGCTCAGGAGACTGCAGAAAAAGTTGCTGCTCTTCTTGCCCCTCAGTCAGGTTCTTATTATGATTTATGGGTAGATGGAGAGAAAATAATGTCAGCAGATCCACCAGATGTTGTAGAGGCTCGCAGCGATAACTCTCATGGCACAAATTTTGAAGATTCACCAGAGCCAATTTATGGGACTCAGTTCCTGCCTCGTAAGTTCAAGGTCGCTGTTACTGTACCCACAGATAACTCTGTTGACATCCTTACCAATGATGTGGGGCTTGTGGTTGTTTCGGATGAAGCAGGGGAGCCTCAAGGCTTTAACATTTATGTAGGAGGAGGCATGGGAAGAACTCTTCGTGTTGAGACCACATTCCCACGGTTGGGAGAGCCTCTTGGTTATGTGCCCAAGGAAGATATTCTCTATGCTGTGAAAGCTATTGTTGTGACACAACGAGATAATGGAAGGCGAGATGATAGAAAATACAGTCGTATGAAATACTTGATACATGAGTGGGGAATTGAGAAGTTTCGGTCTGTTGTTGAGCAGTACTATGGAAAAAAGTTTGAGCCTTTCAAGGAGCTCCCACAGTGGGAGTTCAAGAGCTACTTGGGTTGGCATGCACAGGGAGATGGCAAATATTTTTATGGAGTCCATGTTGATAATGGCCGGATTAAAGGTGCTACAAAAAAAGCATTGCGAAACTTGATTGAGAAGTACGGCTTAAGTGTCCGTCTTACCCCAAACCAGAACCTCATCTTGTGTGATATTCGCAATTACTGGAAAAGACATGTCACTAGTATTCTTTCTCAAGCTGGCTTACTGGATTCAAGTTATGTTGATCCTCTAAATGTGACAGCCATGGCATGCCCTGCCTTACCGTTATGTCCTCTTGCTATAACAGAGGCAGAACGTGGAAGTCCTGATATTATTAAAAGGGTCCGTGCTGTGTTTGAAAAGGTTGGGTTAAAGTACACGGATTCAATTGTGATAAGGTTCACTGGATGCCCTAATGGTTGTGCAAGACCGTACATGGCTGAGCTAGGCTTTGTGGGAGATGGACCGAACAGCTATCAGATTTGGCTTGGTGGGACACCTAACCAAACACAACTTGCAAAACCCTTCATAGACAAGGTCAAAGTGCAAGAATTGGAAAAAGTTCTGGAGCCTCTATTTTATTATTGGAGGAGAATGCGTCAGAGTGGAGAATCTTTTGGCAGCTTCACAGAAAGATTGGGTTTTGACAAGCTAGAAGAAATGGTGAGCAAATGGAAAGGTATGAGGGCATCCAAACACACCCTAAAAGTTATCGCTGGGAAGGAAACATATGAAGCCCTGAGAAAGCTTGCAGAAGCCCAAGGTACGGATGCAAGTGAGTTATCTGCGGAGATCCTTCAAAATTATGTGAAGGAGCAGAGAATAAACGGACCCACATAAAGCAGTGACATTTCCCACATTACAGGGTGAACATAAAATGCTTTAATTTTACATCAACTGCCTTTCCTCTGAAATCTTTTTATGCTGATCAGATTAAGCTCAAGAAGCAGGATACGATCCTGGTTGACTGGTAATTTCCAATGATGATTGACATGATCTTTTTGTTGTGAGTTAGGGGGATGCATGGAAAGTTAGTTTTCTGCCGTTTCTGGTTTGCTGTTTTGGGTAAATTATTTGCCATCTAGGATTATGAATGTCTTTTTCAGCACATGCTGACCTAGTCTCCTTTCTGATGGAGAAATAAATGCAATCTAGTCACATGTTATCGGAATTAGAATTTCATTACGAATCAAACTAATTATCAAGCACGATGAGACCTAATTCAGAAACTTTTCGCATGCATCCTGAGTTGGGACAAGTTTTCTACTTCGGTCACTAGAAGGGACGAGATACCCCAATCTCAGGATATAACGGGATTAGTACTATTTCTTTTGAGAATTATTAATTTCTTTCATGTAATTTCTTTTGAGAATTGTTAATTTCTTTCTATTAGTTTTTGATATGGCCATGTCATGTGCATTGCCTTACATACAAGTGGTGAAAACAAATGGATGGAATCCTTTAATATAACTAGTTGTTTTTTTCATCTGAAAAAGAAAAGAAAACAAATGGATGGAAGAATCATTTTTGCTCATATGGCGCTAATCAATAT

Ace file of the UniGene sp_v3.0_unigene2520

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	sulfite reductase [Nicotiana tabacum] dbj\|BAA33796.1\| sulfite reductase [Nicotiana tabacum]	-	-	0.0	71%
FL-Next	sp=Sulfite reductase 1 [ferredoxin], chloroplastic; Nicotiana tabacum (Common tobacco).	-	-	0.0	71%
Sma3	Sulfite reductase	-	-	2.36899e-40	-

Source	ECs	Term	Type	e value	Identity
Sma3	Sulfite reductase (ferredoxin).	EC:1.8.7.1	-	5.019e-24	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Sulfur metabolism	00920		5.019e-24	%
Sma3	Metabolic pathways	01100		5.019e-24	%

Source	Gene names
Sma3	16.t00014; AT5g04590/T32M21_190; At5g04590; CHLREDRAFT_206154; GSVIVT00024596001; MICPUCDRAFT_34650; MICPUN_62484; OSJNBa0017K09.18; OSJNBb0048K05.3; OSTLU_25282; Os05g0503300; OsI_20527; OsJ_19113; Ot12g00150; PHATRDRAFT_24374; PHYPADRAFT_148684; PHYPADR

Source	GOs	Term	Type	Identity
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	sulfite reductase (ferredoxin) activity	GO:0050311	Molecular Function	-
Sma3	iron-sulfur cluster binding	GO:0051536	Molecular Function	-
Sma3	4 iron, 4 sulfur cluster binding	GO:0051539	Molecular Function	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like	IPR005117	-	-
Sma3	Nitrite/sulphite reductase iron-sulphur/siroheam-binding site	IPR006066	-	-
Sma3	Nitrite/sulphite reductase 4Fe-4S domain	IPR006067	-	-
Sma3	Sulphite reductase, ferredoxin dependent	IPR011787	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G04590.1	SIR sulfite reductase chr5:1319404-1322298 FORWARD LENGTH=642	71%
RefSeq	Arabidopsis thaliana	NP_196079.1	sulfite reductase [Arabidopsis thaliana]	71%
RefSeq	Populus trichocarpa	XP_002299903.1	predicted protein [Populus trichocarpa]	76%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: O82802

Fln msg:

Fln protein: MEGTASSAMRMRGAHSARSPEIRFLTYQGLKPTGTVAVPLNARFHANPISAANVLTRAVAAPVKPPATPQTKRSKVEIIKEQSNYLRYPLNEELQTEAPNINEAATQLIKFHGSYQQDNRDERFKGGKSYQFMLRTKNPAGKVPYKLYLAMDDLADEFGIGSLRLTTRQTFQLHGVLKKDLKTVMSTIIRNMGSTLGACGDLNRNVLAPAAPYLTRKDYLFAQETAEKVAALLAPQSGSYYDLWVDGEKIMSADPPDVVEARSDNSHGTNFEDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDVGLVVVSDEAGEPQGFNIYVGGGMGRTLRVETTFPRLGEPLGYVPKEDILYAVKAIVVTQRDNGRRDDRKYSRMKYLIHEWGIEKFRSVVEQYYGKKFEPFKELPQWEFKSYLGWHAQGDGKYFYGVHVDNGRIKGATKKALRNLIEKYGLSVRLTPNQNLILCDIRNYWKRHVTSILSQAGLLDSSYVDPLNVTAMACPALPLCPLAITEAERGSPDIIKRVRAVFEKVGLKYTDSIVIRFTGCPNGCARPYMAELGFVGDGPNSYQIWLGGTPNQTQLAKPFIDKVKVQELEKVLEPLFYYWRRMRQSGESFGSFTERLGFDKLEEMVSKWKGMRASKHTLKVIAGKETYEALRKLAEAQGTDASELSAEILQNYVKEQRINGPT*

Protein Length: 695

Fln nts: CTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGAGCAGGCCTGGATTGATTGAAGGAATGAAGCTCAAACCACCGAAAAATAAGAAGGTTTCCTGAAAGCTCCTAGACGCTGAAAATCTAAACGGGGCAACAACGTCTGTACAAACCAAGCCGTCTGAAATTCTGCGTCTGTTGATAGGAAAAGGCGGCCAA_-_ATGGAAGGTACTGCTTCTTCAGCCATGAGAATGAGAGGTGCACACAGCGCAAGAAGTCCTGAGATACGCTTCCTTACTTACCAGGGACTCAAACCCACTGGGACAGTAGCAGTTCCTCTTAACGCACGTTTCCATGCGAACCCGATTTCTGCTGCCAACGTTCTTACGAGGGCTGTTGCCGCTCCAGTCAAGCCACCTGCAACACCACAGACTAAGCGCAGCAAGGTTGAAATTATTAAGGAACAGAGTAACTATTTACGGTATCCTTTAAATGAAGAGTTACAGACAGAAGCACCAAATATCAATGAGGCTGCAACACAGCTGATTAAATTTCATGGAAGCTATCAGCAAGACAACAGAGATGAGCGCTTTAAAGGAGGCAAGTCTTATCAGTTCATGCTTCGAACGAAGAACCCGGCAGGGAAAGTTCCATATAAACTCTACTTGGCAATGGATGATCTTGCAGATGAGTTTGGGATTGGAAGTCTTCGACTTACGACAAGACAGACATTTCAACTTCATGGCGTGCTTAAGAAGGATCTGAAGACAGTTATGAGTACCATCATCAGAAATATGGGATCCACACTTGGAGCATGTGGTGACTTGAATAGAAATGTTCTAGCTCCTGCAGCACCATATTTGACTAGAAAAGATTATTTATTTGCTCAGGAGACTGCAGAAAAAGTTGCTGCTCTTCTTGCCCCTCAGTCAGGTTCTTATTATGATTTATGGGTAGATGGAGAGAAAATAATGTCAGCAGATCCACCAGATGTTGTAGAGGCTCGCAGCGATAACTCTCATGGCACAAATTTTGAAGATTCACCAGAGCCAATTTATGGGACTCAGTTCCTGCCTCGTAAGTTCAAGGTCGCTGTTACTGTACCCACAGATAACTCTGTTGACATCCTTACCAATGATGTGGGGCTTGTGGTTGTTTCGGATGAAGCAGGGGAGCCTCAAGGCTTTAACATTTATGTAGGAGGAGGCATGGGAAGAACTCTTCGTGTTGAGACCACATTCCCACGGTTGGGAGAGCCTCTTGGTTATGTGCCCAAGGAAGATATTCTCTATGCTGTGAAAGCTATTGTTGTGACACAACGAGATAATGGAAGGCGAGATGATAGAAAATACAGTCGTATGAAATACTTGATACATGAGTGGGGAATTGAGAAGTTTCGGTCTGTTGTTGAGCAGTACTATGGAAAAAAGTTTGAGCCTTTCAAGGAGCTCCCACAGTGGGAGTTCAAGAGCTACTTGGGTTGGCATGCACAGGGAGATGGCAAATATTTTTATGGAGTCCATGTTGATAATGGCCGGATTAAAGGTGCTACAAAAAAAGCATTGCGAAACTTGATTGAGAAGTACGGCTTAAGTGTCCGTCTTACCCCAAACCAGAACCTCATCTTGTGTGATATTCGCAATTACTGGAAAAGACATGTCACTAGTATTCTTTCTCAAGCTGGCTTACTGGATTCAAGTTATGTTGATCCTCTAAATGTGACAGCCATGGCATGCCCTGCCTTACCGTTATGTCCTCTTGCTATAACAGAGGCAGAACGTGGAAGTCCTGATATTATTAAAAGGGTCCGTGCTGTGTTTGAAAAGGTTGGGTTAAAGTACACGGATTCAATTGTGATAAGGTTCACTGGATGCCCTAATGGTTGTGCAAGACCGTACATGGCTGAGCTAGGCTTTGTGGGAGATGGACCGAACAGCTATCAGATTTGGCTTGGTGGGACACCTAACCAAACACAACTTGCAAAACCCTTCATAGACAAGGTCAAAGTGCAAGAATTGGAAAAAGTTCTGGAGCCTCTATTTTATTATTGGAGGAGAATGCGTCAGAGTGGAGAATCTTTTGGCAGCTTCACAGAAAGATTGGGTTTTGACAAGCTAGAAGAAATGGTGAGCAAATGGAAAGGTATGAGGGCATCCAAACACACCCTAAAAGTTATCGCTGGGAAGGAAACATATGAAGCCCTGAGAAAGCTTGCAGAAGCCCAAGGTACGGATGCAAGTGAGTTATCTGCGGAGATCCTTCAAAATTATGTGAAGGAGCAGAGAATAAACGGACCCACATAA___AGCAGTGACATTTCCCACATTACAGGGTGAACATAAAATGCTTTAATTTTACATCAACTGCCTTTCCTCTGAAATCTTTTTATGCTGATCAGATTAAGCTCAAGAAGCAGGATACGATCCTGGTTGACTGGTAATTTCCAATGATGATTGACATGATCTTTTTGTTGTGAGTTAGGGGGATGCATGGAAAGTTAGTTTTCTGCCGTTTCTGGTTTGCTGTTTTGGGTAAATTATTTGCCATCTAGGATTATGAATGTCTTTTTCAGCACATGCTGACCTAGTCTCCTTTCTGATGGAGAAATAAATGCAATCTAGTCACATGTTATCGGAATTAGAATTTCATTACGAATCAAACTAATTATCAAGCACGATGAGACCTAATTCAGAAACTTTTCGCATGCATCCTGAGTTGGGACAAGTTTTCTACTTCGGTCACTAGAAGGGACGAGATACCCCAATCTCAGGATATAACGGGATTAGTACTATTTCTTTTGAGAATTATTAATTTCTTTCATGTAATTTCTTTTGAGAATTGTTAATTTCTTTCTATTAGTTTTTGATATGGCCATGTCATGTGCATTGCCTTACATACAAGTGGTGAAAACAAATGGATGGAATCCTTTAATATAACTAGTTGTTTTTTTCATCTGAAAAAGAAAAGAAAACAAATGGATGGAAGAATCATTTTTGCTCATATGGCGCTAATCAATAT

Fln Alignment:

Contig2520___SPEIRFLTYQGLKPTGTVAVPLNARFH-------ANPISAANVLTRXXXXXXXXXXXXXXXRSKVEIIKEQSNYLRYPLNEELQTEAPNINEAATQLIKFHGSYQQDNRDERFKGGKSYQFMLRTKNPAGKVPYKLYLAMDDLADEFGIGSLRLTTRQTFQLHGVLKKDLKTVMSTIIRNMGSTLGACGDLNRNVLAPAAPYLTRKDYLFAQETAEKVAALLAPQSGSYYDLWVDGEKIMSADPPDVVEARSDNSHGTNFEDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDVGLVVVSDEAGEPQGFNIYVGGGMGRTLRVETTFPRLGEPLGYVPKEDILYAVKAIVVTQRDNGRRDDRKYSRMKYLIHEWGIEKFRSVVEQYYGKKFEPFKELPQWEFKSYLGWHAQGDGKYFYGVHVDNGRIKGATKKALRNLIEKYGLSVRLTPNQNLILCDIRNYWKRHVTSILSQAGLLDSSYVDPLNVTAMACPALPLCPLAITEAERGSPDIIKRVRAVFEKVGLKYTDSIVIRFTGCPNGCARPYMAELGFVGDGPNSYQIWLGGTPNQTQLAKPFIDKVKVQELEKVLEPLFYYWRRMRQSGESFGSFTERLGFDKLEEMVSKWKGM--RASKHTLKVIAGKETYEALRKLAEAQGTDASELSAEILQNYVKEQR
O82802______________NPKLQIHNFSGLKSTSN-SLLLSRRLHVFQSFSPSNPSSIVRAVSTPAKPAAVEPK-----RSKVEIFKEQSNFIRYPLNEEILNDAPNINEAATQLIKFHGSYMQYDRDER--GGRSYSFMLRTKNPGGEVPNRLYLVMDDLADQFGIGTLRLTTRQTFQLHGVLKKNLKTVMSTIIKNMGSTLGACGDLNRNVLAPAAPF-AKKDYMFAKQTADNIAALLTPQSGFYYDVWVDGEKVMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKIAVTVPTDNSVDIFTNDIGVVVVSNEDGEPQGFNIYVGGGMGRTHRMETTFPRLAEPLGYVPKEDILYAVKAIVVTQRENGRRDDRRYSRLKYLLSSWGIEKFRSVTEQYYGKKFQPCRELPEWEFKSYLGWHEAGDGSLFCGLHVDNGRVKGAMKKALREVIEKYNLNVRLTPNQNIILCNIRQAWKRPITTVLAQGGLLQPRYVDPLNLTAMACPAFPLCPLAITEAERGIPDILKRVRAIFERVGLKYSESVVIRITGCPNGCARPYMAELGLVGDGPNSYQIWLGGTPNQTSLAKTFKDKLKVQDLEKVLEPLFFHWRRKRQSKESFGDFTNRMGFEKLGEFVEKWEGIPESSSRYNLKLFADRETYEAMDALASIQDKNAHQLAIEVVRNYVASQQ

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
1096		18		81	0.999994
1155	83		16		0.999991
1405	50		50		1.0
1786		37		62	1.0
2028	33		66		1.0
2077	20		80		0.999996
2078		20	80		0.999996
2079	20		80		0.999996
2175	16	83			0.994512
2177	16	83			0.994512
2179			80	20	0.995493
2266		85		14	0.993533
2273	85			14	0.993533
2274		85		14	0.993533
2280	12		87		0.992554
2281		87		12	0.992554
2282	87		12		0.992554
2284			12	87	0.992554
2313	85		14		0.993533
2420		11		88	0.923564
2458	90		10		0.90298
2462	88		11		0.999952
2465			88	11	0.999952
2466	88		11		0.999952
2468	88	11			0.999952
2469		11	88		0.999952
2472	88		11		0.999952
2474		11		88	0.999952
2476			11	88	0.999952
2479	11			88	0.999952
2480		11	88		0.999952
2481		88		11	0.999952
2483	11		88		0.999952
2730	83		16		0.999991
2867	40	60			1.0
2904	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain