SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2510

Length: 1567 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene2510

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	monothiol glutaredoxin-S15 [Arabidopsis thaliana] ref\|NP_001030704.1\| monothiol glutaredoxin-S15 [Arabidopsis thaliana] sp\|Q8LBK6.2\|GRS15_ARATH RecName: Full=Monothiol glutaredoxin-S15, mitochondrial; Short=AtGrxS15; Flags: Precursor dbj\|BAB02297.1\| unnam	-	-	5.60519e-45	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Sma3	Putative uncharacterized protein	-	-	0.0	-

Source	GOs	Term	Type	Identity
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	protein disulfide oxidoreductase activity	GO:0015035	Molecular Function	-
Sma3	cell redox homeostasis	GO:0045454	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glutaredoxin	IPR002109	-	-
Sma3	Monothiol glutaredoxin-related	IPR004480	-	-
Sma3		IPR012335	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G15660.1	ATGRX4, GRX4 glutaredoxin 4 chr3:5308134-5309383 REVERSE LENGTH=169	54%
RefSeq	Arabidopsis thaliana	NP_566522.1	monothiol glutaredoxin-S15 [Arabidopsis thaliana]	54%
RefSeq	Populus trichocarpa	XP_002303260.1	glutaredoxin S15 [Populus trichocarpa]	60%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWK7

Fln msg:

Fln protein: MAGAMAHQILQRALRLQSASSVAGARVLYGLSGQKRFSTIGEDPDTHSDFKAVNKAPKDVPSARELVEKDIEQNRIMLYMKGVPSAPRCGFSALAVKVLQEYDVPFSARNILEDQELKESIKSFSNWPTFPQIFIKGEFVGGSDIILNMHQSGELKEMLKDLIPPSK*

Protein Length: 169

Fln nts: ACTGCTAAGCAGTCGTAGCAACCCAGACTACCAGGGGGATCAAACCTTTGTCTCTAAGATTCGAGCACCGCCAGCTCCCTCGCTTTGGTGATCTAGCTCGCTCGAGCTGCTTGCTCTGGCTTTGGGTTACCTCTTTCACTCCTGCTTGTACTGCTGGTTCTTCCGATAAGGGTTAACAGGTCTTGAACTCTTCCAATCAGGCTAATAGGTTCCTGAACAACTCCTCCAGTTGCACAGAGGAAAGTTCTGCAACCGTTTGGGCGTCATAGGGCTCCTGAGAAACCCGCGGTGATAAGGTGTTTTGGTTGCTATAAAATCAGGATTATCGAATAATTATTTTCAGTAAGCAC_-_ATGGCTGGGGCAATGGCTCATCAGATCCTGCAGAGAGCCCTGAGATTACAATCAGCTTCTTCAGTTGCAGGAGCCAGGGTATTGTATGGGTTGAGTGGACAAAAGAGGTTCTCAACTATTGGAGAAGATCCTGACACTCATAGTGATTTCAAAGCTGTAAATAAGGCCCCGAAGGATGTTCCCTCAGCACGTGAGTTGGTGGAGAAGGATATCGAACAAAATCGTATAATGCTATATATGAAAGGAGTTCCATCTGCTCCTCGCTGTGGCTTCAGTGCCTTAGCTGTCAAAGTGCTGCAAGAATATGATGTTCCATTTAGTGCAAGAAATATATTGGAGGATCAAGAGCTCAAAGAAAGCATTAAATCTTTCAGCAATTGGCCCACCTTTCCCCAGATCTTTATAAAAGGGGAGTTTGTTGGAGGCTCTGATATTATCTTAAACATGCATCAGTCTGGTGAACTAAAGGAAATGTTGAAGGATCTGATACCACCCAGTAAGTAG___AGGGTCAGGCATGATTCTTGTGGGCTCTGGAATGCGTTATGTTGCATTCTATATTACAATTACTCCATGTTTAATAAGTTATCTAAGCTGAGGTTGTAGGAACGTGTTGATTATGCATCTCATCTAATGGGATGGTTCTTAAGAATTGTTGTATTTAACTTAACAATTCATGATGTTTATCTTGTTGTTAGCCTTTGATATTGTAATATGTTATGTTTCCATTTGATATTTTATTCTGCCCCTAAGTATTGTAGTGAAATACAAAGGTGTCTTGACATCTGGACAGTACTTTTACATCGATTAGTTCGTATTTTAAAGTTGACACACAATATGAAAGGGAAGCCTGCTACTAATAAAATAGATTTCCTAGTCTCATCCTTGCAGAGGCCTGGACATGGAATACCTTGTATTGCATTCAATAACAATGATTGTTAAAGGTCTCAAAGGATTCATATTCAATAAGAGGAGAGCATGTAGACCAGGAAGGTCTCAAAGGATTGTTAAAGATGAACATAAACATTGAAGCTCCAGGGTTTATATCTTCACTTTGCACTAAAAATTATGCCTAGTGATATACGGATGTATGTTACCCCTAGATCATGAAACCTATGCAATTATGCTATTTGTATTTTGTAATGAACAAAGGGCATTTCATTTGAATGAATGTTGTTTTCCACATCTTTGTTCAAGTAATTTTAGAATGACATTTTTGT

Fln Alignment:

Contig2510___MAGAMAHQILQRALRLQSASSVAGARVLYGLSGQKRFSTIGEDPDTHSDFKAVNKAPKDVPSARELVEKDIEQNRIMLYMKGVPSAPRCGFSALAVKVLQEYDVPFSARNILEDQELKESIKSFSNWPTFPQIFIKGEFVGGSDIILNMHQSGELKEMLKDLIPPSK
A9NWK7______________MAGAMAHQILQRALRLQSASSASGVRVLYGLSGQKRFSTIGEDPDTHSDFQAVNKAPKDVPSARELVEKDIKNNHIMLYMKGVPAAPRCGFSALAVKVLQEYDVPFSARNILEDQELKESIKSFSNWPTFPQIFIKGEFVGGSDIILNMHQSGELKETLKDLLPLNK

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
564		50		50	1.0
580	83			16	0.994512
807		11		88	0.923564
845		87		12	0.992554
869	87			12	0.992554
871	12			87	0.992554
976		20		80	0.999996
986		10	90		0.90298
989			90	10	0.90298
1024		33		66	1.0
1038		33		66	1.0
1040		33		66	1.0
1042	33		66		1.0
1058			33	66	1.0
1062	33			66	1.0
1098			25	75	0.996473
1129	25		75		0.996473
1243		89		10	0.999919
1268		89		10	0.999919
1320		35	65		1.0
1374	53		46		1.0
1396	45	54			1.0
1402	18			81	0.999994
1409		14		85	0.993533
1410	83		16		0.994512
1475	20		80		0.995493
1476	40	60			1.0
1478	80		20		0.995493
1519	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain