SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2501

Length: 3514 nt

UniGene Fasta

>sp_v3.0_unigene2501
TCCCTGCACATTCGTCATTCTTTCCTCGCTTCATTGCCAGACAGAGAGGCAGCCAGACAGCTTCTTCTTGGTTCTTTCCCTTTCTTGATCTACAAAAGCTGCGATCCTACTGCTATGCGGACTGGGCGGTTTCACGAGGAGAGGCCAGCGGTAGCGTACGATTCATCTCTGCATCCGGTCTTGGGACTGTATTTCTTAATATATAAATTCAAAGAAAGCATGTGTGGAGCACCAGAGCATTCAAAAGTCAGCGAGAACAATGAAGACAATGGAAAAGTTGTACTTGCTGAGAAACAACTGAGCAAAATGAAGGAAACTCAAAAATGTTTCTCGATTCTCCTTGAACTCGCTGCAAATAATGACCTGATTGGATTTAAGCAAGCTGTTGAGGAAGATGGCTCAGCGATTGATGAGATTAGTTTTTGGTATGGGCGTCAAAATGGTTCCAAACAGATGGGTTTGGAGCAGAGGACTCCTCTGATGATTGCTGCCCTTTTTGGTAGCATGGATGTATTGGCTTATATATTATCTGCTTATGCGACTTGTGGAATAGATGTTAATTTAAAATGTGGGTCAGACAGGAGCACTGCTCTACATTGTGCTGCTGCAGGAGGGTCTAGTTTTGCCGTTGAAGCCGTGAGGTTATTGCTTCAGTCAGACGCAGATGTTAATTGTTTGGATGCTAATGGAAGGAGGCCTGTAGATGTGATTGTGGTTTCCCCGAAGCTCTTTAATGCGAAGGTCATATTGAACAATATGTTAAAAGCAGAATATCATAGCAGGGCAGGGGCTTGGACAAAGGTTCTTAGTAGAGTTTCAGAGTATGGCAATACTGACTTGTCTGGCCGAGGGTCCAATAGTCTGGGTTCGTTGCCACATCTCTCGTCATCTTTTGAACCACAAAGTCCAAAAGTGCTGATGTCATCCCCGAAGATTTCCGAGGCATCAAGGAATTGTGCTGATGGTATTGAAAAGAGAGAGTATCCTGTGGATCCTTCTCTTCCAGACATAAAGAATGGCGTGTATAGCACCGATGAGTTTCGAATGTATTCTTTCAAAGTGAGACCTTGTTCTAGAGCTTATTCTCATGATTGGACTGAGTGCCCATTTGTGCACCCTGGAGAAAATGCCAGAAGACGAGATCCTCGAAAGTATCACTATACTTCTGTTCCTTGTCCAGAGTTCAGGAAAGGGACTTGTAGACGTGGTGATCTGTGTGAGTTTGCACATGGTGTTTTTGAGTGTTGGTTGCACCCTGCTCAATATCGAACTCGGTTATGCAAAGATGAAACAAATTGTACAAGAAGGGTGTGTTTTTTTGCACACAAACCTGAGGAGTTGCGTCCTTTGTCTGGATTTACTGGATCAGCTGTTCCATCACCCCGAGCTTCGTCTTCATTGGATATGAATTCAACCATGAGCCCTCTTACACTAGGCTCACCGTCTCCTGTTTTCGTGATGTCTTCTCTTTCGCCTTCAAATCCTCCTCAGGGGAGCTTATCCACCCCCCCAATGTCTCCCTCTTCATCATCAGCAAACTCATTAACTCATTCATCATTTGGTGGAACCTGGCCACAACCTAGTGTACCAACATTGCATCTTCCCGGTGGCAGTCTTCAAGTTGGTCTTCAAGCTAGTCGCCTCCGAGCATCACTTAATGCCAGAGATGTACCTCTTGAGGAATTGACCTTAGATTCGGATTGTGAAGGGCAACTTATAAATGATTTTGCTTCTCTTTCAGGATCTGGAAACACCTTGTTGAGGTCTGGAAAATACAAGAGTCATGGCTGTAGTATTGCTCCAGTTAATCTTGAGGATCTATTTGCTTCTGAGATGTCTCCTAGGGGACCATGCCTTGAACCTTCCGTGTTTTCTCAGATAAGTTCTCAAATTCAGTCACACAAGGCAGCTCAAGTTCAGCCTCAGGTGCAAACACCAATTAGTAATCAGATTTCTCAGATACATCAAATGCAGCAAGGTGCAATAGGTGGTCAAGGAAACAGCCATTTGCACTCTCCAGTTCAGCCATCACACCGTCTGCCATCTCTTGGTTTGGATTTGGAGCGACAGACTTCTAATGGGTCTGTTTTATCACCAGCTTTGATGGCTGCTATGAAATCAAGATCTGCTTCATTTGCACAGAGGGATCTCCGGAGCTATAGTTCCCGTGATTTAGGCGCTCATGCATCTTTACCATCTTTGGCAGATTGGGGTTCTCCTACGGGTAAAGCAAACTGGGGGGTTGAAAAGGGAGAACTCAATAAATTTAGGAAATCAGCTTCATTTGGCTTCCGAACCTCAAATGAGCCAGATTTGTCTTGGGTTCAAACCACGGTGAAAGAAAATCCAGTTGATGCTGTGGAGGGATGCACTGTAGGTTTCTCTCTAGAAGCCTTAAGAAACAGACAGACAGAAAACATAAATAATGCAGTGCTGGGTGCTTGGGCTGAGCAGCAGATGCATTTGGATCAGCAAATGGTAGCTTAACATATCCAAAGATTTAGAGACTACTCATTTTTTCTATTTTCTTATTTTTTAAGAACTTGACATTTTGAACCCATAAATATCTGGTCTTTTATCTGTTATATATATAGATAGATATAACCCTCGAGGATAGCTGGTAAAGAACCGTGGGGATATAGACCCTACTTGATGGGTTCTTTTAGAAAGATGCAAGCGATTGGTTGTCAAGAAAAGTTGACAAGACGGCATGGTACGTGGGCATCTTAAGCATATGAAGTTTGAACCAAGGGATTTGGTAGTAGAATGGTTAAAGAATCTCAGAGTTTCAGGTGTCAGTTTTGACTGCATTCTTGAAATGTTATAAAAGTGAGGGACTCTTCCTGTCTCTAGTCTATATGCTTGGACAAACATTGCAGCGGCTAATTTTGGCTGTATCCATTATCTTCATACTGCATCAACTAATTATTGGATGGAGCAAGATGTTGTAACTTGTAAAAATTGCCCTCAATCTAACTGTATTTATCTATTTTGATTTAATGGCCCGAAGCCAATGTGCTTGGAAAGAAGGTCAAATCTCAGAAAGTTATGTTAGAGATGTGTTCTTTAAAACGATTATTTTTGTCTTTTTATCAATCCCTCATTGCAGTGCCAAAGTTGAGATGATCTGTTGCTGTTATATTAAAATGCAGTCTACGAGGGGTGTGTGCAAGATGAAGGTGCAAAGGTGTTCTTTGTTGCATTCCTTCACTTTGCATAATACTGATATCTGAGTAAAAGGTTGCAGCTGCCAATTAAATGTTACTTTAAACATTTAGAGATTGCAGACAAGTAGAAGAAAATAAATGTTAACCTTGTCTGACTACTGTTACGGAATGTGATATTCTATTTTGTTCTGATGAAGTGTAAAATAACTAATTTTTTCAGGGGTGATGTTTCGTATGTGGCATGGTAGAATGCTGTGTTTCACTGTAGCCTGAGCAAAATATTCTGGTATTGACAACAATGATATTCTATTTTGTTCTGATGAAGTGTAAGATAACTAATTTTTTCA

Ace file of the UniGene sp_v3.0_unigene2501

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ank_2 domain containing protein	-	-	2.0e-10	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	58%
Sma3	Zn-finger transcription factor	-	-	8.255e-15	-

Source	Gene names
Sma3	AT3G55980; Aa1_7500; Aa6_7500; Al5g07500; At1g03790; At2g19810; At2g25900; At2g41900; At4g29190; At5g12850; At5g44260; At5g58620; Bd5g07500; Bo_7500; CHLREDRAFT_119209; CHLREDRAFT_182666; CHLREDRAFT_205729; Cr_7500; F11M21.28; F17A13.10; F17H15.7; F6F22.1

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	negative regulation of seed germination	GO:0010187	Biological Process	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, CCCH-type	IPR000571	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G41900.1	CCCH-type zinc finger protein with ARM repeat domain chr2:17491352-17493502 FORWARD LENGTH=716	45%
RefSeq	Arabidopsis thaliana	NP_565962.1	zinc finger CCCH domain-containing protein 30 [Arabidopsis thaliana]	45%
RefSeq	Populus trichocarpa	XP_002314035.1	predicted protein [Populus trichocarpa]	45%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PPY9

Fln msg:

Fln protein: MRTGRFHEERPAVAYDSSLHPVLGLYFLIYKFKESMCGAPEHSKVSENNEDNGKVVLAEKQLSKMKETQKCFSILLELAANNDLIGFKQAVEEDGSAIDEISFWYGRQNGSKQMGLEQRTPLMIAALFGSMDVLAYILSAYATCGIDVNLKCGSDRSTALHCAAAGGSSFAVEAVRLLLQSDADVNCLDANGRRPVDVIVVSPKLFNAKVILNNMLKAEYHSRAGAWTKVLSRVSEYGNTDLSGRGSNSLGSLPHLSSSFEPQSPKVLMSSPKISEASRNCADGIEKREYPVDPSLPDIKNGVYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYTSVPCPEFRKGTCRRGDLCEFAHGVFECWLHPAQYRTRLCKDETNCTRRVCFFAHKPEELRPLSGFTGSAVPSPRASSSLDMNSTMSPLTLGSPSPVFVMSSLSPSNPPQGSLSTPPMSPSSSSANSLTHSSFGGTWPQPSVPTLHLPGGSLQVGLQASRLRASLNARDVPLEELTLDSDCEGQLINDFASLSGSGNTLLRSGKYKSHGCSIAPVNLEDLFASEMSPRGPCLEPSVFSQISSQIQSHKAAQVQPQVQTPISNQISQIHQMQQGAIGGQGNSHLHSPVQPSHRLPSLGLDLERQTSNGSVLSPALMAAMKSRSASFAQRDLRSYSSRDLGAHASLPSLADWGSPTGKANWGVEKGELNKFRKSASFGFRTSNEPDLSWVQTTVKENPVDAVEGCTVGFSLEALRNRQTENINNAVLGAWAEQQMHLDQQMVA*

Protein Length: 792

Fln nts: TCCCTGCACATTCGTCATTCTTTCCTCGCTTCATTGCCAGACAGAGAGGCAGCCAGACAGCTTCTTCTTGGTTCTTTCCCTTTCTTGATCTACAAAAGCTGCGATCCTACTGCT_-_ATGCGGACTGGGCGGTTTCACGAGGAGAGGCCAGCGGTAGCGTACGATTCATCTCTGCATCCGGTCTTGGGACTGTATTTCTTAATATATAAATTCAAAGAAAGCATGTGTGGAGCACCAGAGCATTCAAAAGTCAGCGAGAACAATGAAGACAATGGAAAAGTTGTACTTGCTGAGAAACAACTGAGCAAAATGAAGGAAACTCAAAAATGTTTCTCGATTCTCCTTGAACTCGCTGCAAATAATGACCTGATTGGATTTAAGCAAGCTGTTGAGGAAGATGGCTCAGCGATTGATGAGATTAGTTTTTGGTATGGGCGTCAAAATGGTTCCAAACAGATGGGTTTGGAGCAGAGGACTCCTCTGATGATTGCTGCCCTTTTTGGTAGCATGGATGTATTGGCTTATATATTATCTGCTTATGCGACTTGTGGAATAGATGTTAATTTAAAATGTGGGTCAGACAGGAGCACTGCTCTACATTGTGCTGCTGCAGGAGGGTCTAGTTTTGCCGTTGAAGCCGTGAGGTTATTGCTTCAGTCAGACGCAGATGTTAATTGTTTGGATGCTAATGGAAGGAGGCCTGTAGATGTGATTGTGGTTTCCCCGAAGCTCTTTAATGCGAAGGTCATATTGAACAATATGTTAAAAGCAGAATATCATAGCAGGGCAGGGGCTTGGACAAAGGTTCTTAGTAGAGTTTCAGAGTATGGCAATACTGACTTGTCTGGCCGAGGGTCCAATAGTCTGGGTTCGTTGCCACATCTCTCGTCATCTTTTGAACCACAAAGTCCAAAAGTGCTGATGTCATCCCCGAAGATTTCCGAGGCATCAAGGAATTGTGCTGATGGTATTGAAAAGAGAGAGTATCCTGTGGATCCTTCTCTTCCAGACATAAAGAATGGCGTGTATAGCACCGATGAGTTTCGAATGTATTCTTTCAAAGTGAGACCTTGTTCTAGAGCTTATTCTCATGATTGGACTGAGTGCCCATTTGTGCACCCTGGAGAAAATGCCAGAAGACGAGATCCTCGAAAGTATCACTATACTTCTGTTCCTTGTCCAGAGTTCAGGAAAGGGACTTGTAGACGTGGTGATCTGTGTGAGTTTGCACATGGTGTTTTTGAGTGTTGGTTGCACCCTGCTCAATATCGAACTCGGTTATGCAAAGATGAAACAAATTGTACAAGAAGGGTGTGTTTTTTTGCACACAAACCTGAGGAGTTGCGTCCTTTGTCTGGATTTACTGGATCAGCTGTTCCATCACCCCGAGCTTCGTCTTCATTGGATATGAATTCAACCATGAGCCCTCTTACACTAGGCTCACCGTCTCCTGTTTTCGTGATGTCTTCTCTTTCGCCTTCAAATCCTCCTCAGGGGAGCTTATCCACCCCCCCAATGTCTCCCTCTTCATCATCAGCAAACTCATTAACTCATTCATCATTTGGTGGAACCTGGCCACAACCTAGTGTACCAACATTGCATCTTCCCGGTGGCAGTCTTCAAGTTGGTCTTCAAGCTAGTCGCCTCCGAGCATCACTTAATGCCAGAGATGTACCTCTTGAGGAATTGACCTTAGATTCGGATTGTGAAGGGCAACTTATAAATGATTTTGCTTCTCTTTCAGGATCTGGAAACACCTTGTTGAGGTCTGGAAAATACAAGAGTCATGGCTGTAGTATTGCTCCAGTTAATCTTGAGGATCTATTTGCTTCTGAGATGTCTCCTAGGGGACCATGCCTTGAACCTTCCGTGTTTTCTCAGATAAGTTCTCAAATTCAGTCACACAAGGCAGCTCAAGTTCAGCCTCAGGTGCAAACACCAATTAGTAATCAGATTTCTCAGATACATCAAATGCAGCAAGGTGCAATAGGTGGTCAAGGAAACAGCCATTTGCACTCTCCAGTTCAGCCATCACACCGTCTGCCATCTCTTGGTTTGGATTTGGAGCGACAGACTTCTAATGGGTCTGTTTTATCACCAGCTTTGATGGCTGCTATGAAATCAAGATCTGCTTCATTTGCACAGAGGGATCTCCGGAGCTATAGTTCCCGTGATTTAGGCGCTCATGCATCTTTACCATCTTTGGCAGATTGGGGTTCTCCTACGGGTAAAGCAAACTGGGGGGTTGAAAAGGGAGAACTCAATAAATTTAGGAAATCAGCTTCATTTGGCTTCCGAACCTCAAATGAGCCAGATTTGTCTTGGGTTCAAACCACGGTGAAAGAAAATCCAGTTGATGCTGTGGAGGGATGCACTGTAGGTTTCTCTCTAGAAGCCTTAAGAAACAGACAGACAGAAAACATAAATAATGCAGTGCTGGGTGCTTGGGCTGAGCAGCAGATGCATTTGGATCAGCAAATGGTAGCTTAA___CATATCCAAAGATTTAGAGACTACTCATTTTTTCTATTTTCTTATTTTTTAAGAACTTGACATTTTGAACCCATAAATATCTGGTCTTTTATCTGTTATATATATAGATAGATATAACCCTCGAGGATAGCTGGTAAAGAACCGTGGGGATATAGACCCTACTTGATGGGTTCTTTTAGAAAGATGCAAGCGATTGGTTGTCAAGAAAAGTTGACAAGACGGCATGGTACGTGGGCATCTTAAGCATATGAAGTTTGAACCAAGGGATTTGGTAGTAGAATGGTTAAAGAATCTCAGAGTTTCAGGTGTCAGTTTTGACTGCATTCTTGAAATGTTATAAAAGTGAGGGACTCTTCCTGTCTCTAGTCTATATGCTTGGACAAACATTGCAGCGGCTAATTTTGGCTGTATCCATTATCTTCATACTGCATCAACTAATTATTGGATGGAGCAAGATGTTGTAACTTGTAAAAATTGCCCTCAATCTAACTGTATTTATCTATTTTGATTTAATGGCCCGAAGCCAATGTGCTTGGAAAGAAGGTCAAATCTCAGAAAGTTATGTTAGAGATGTGTTCTTTAAAACGATTATTTTTGTCTTTTTATCAATCCCTCATTGCAGTGCCAAAGTTGAGATGATCTGTTGCTGTTATATTAAAATGCAGTCTACGAGGGGTGTGTGCAAGATGAAGGTGCAAAGGTGTTCTTTGTTGCATTCCTTCACTTTGCATAATACTGATATCTGAGTAAAAGGTTGCAGCTGCCAATTAAATGTTACTTTAAACATTTAGAGATTGCAGACAAGTAGAAGAAAATAAATGTTAACCTTGTCTGACTACTGTTACGGAATGTGATATTCTATTTTGTTCTGATGAAGTGTAAAATAACTAATTTTTTCAGGGGTGATGTTTCGTATGTGGCATGGTAGAATGCTGTGTTTCACTGTAGCCTGAGCAAAATATTCTGGTATTGACAACAATGATATTCTATTTTGTTCTGATGAAGTGTAAGATAACTAATTTTTTCA

Fln Alignment:

Contig2501___MCGAPEHSKVSENNEDNGKVVLAEKQLSKMKETQKCFSILLELAANNDLIGFKQAVEEDGSAIDEISFWYGRQNGSKQMGLEQRTPLMIAALFGSMDVLAYILSAYATCGIDVNLKCGSDRSTALHCAAAGGSSFAVEAVRLLLQSDADVNCLDANGRRPVDVIVVSPKLFNAKVILNNMLKAEYHSRAGAWTKVLSRVSEYGNTDXXXXXXXXXXXXPHLSSSFEPQSPKV-----LMSSPKISEASRNCADGIEKREYPVDPSLPDIKNGVYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYTSVPCPEFRKGTCRRGDLCEFAHGVFECWLHPAQYRTRLCKDETNCTRRVCFFAHKPEELRPLSGFTGSAVPSPRASSSLDMNSTMSPLTLGSPSPVFVMSSLSPSNPPQGXXXXXXXXXXXXXXXXXXXXXFGGTWPQPSVPTLHLPGGSLQVGLQASRLRASLNARDVPLEELTLDSDCEGQLINDF-------------ASLSGSGNTLLRSGKYKSHGC-SIAPVNLEDLFASEM-SPRGPCLEPSVFXXXXXXXXXHKAA----QVQPQVQTPISNQ-ISQ-IHQMQQGAIGGQGNSHLHSPVQPSH-------RLPSLGLDLERQTSNGSVLSPALMAAMKSRSASFAQRDLRSYSSRDLGAHASLPSLADWGSPTGKANWGVEKGELNKFRKSASFGFRTSNEPDLSWVQTTVKENPVDAVEGCTVGFSLEALRNRQTENINNAVLGAWAEQQMHLDQ
C0PPY9______________MCGGPEHLKPASPHEEGDKVKMAENQAIKVKEISESCSSLHELAANNDLIGFKKAMEEEGSKIDEVNFWYGRQNGSNQMVLEQRTPLMVAALYGSVDALKYILSIYVTCGADVNQACGSDNCTALHCAAVGGSACAVETVKLLLQSGGDVNCFDAYGRRPADVIMVSPKLTEVKVKLEEMLNAAGTGQTSP-TKVANIIPGLPGLESKGMESMPSSTLLPLSVSLEASNNRSGCVHSPTSSPKSMEALKGFGDVNEKKEYPVDPSFPDIKNSIYTTDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRRYHYSCVPCPDFRKGTCRRSDVCEYAHGVFECWLHPAQYRTRLCKDGTNCSRRVCFFAHTSEELRPLIVSTGSAVPSPRASSSLDMSSVMSPLAPGSPSSVSMMSPFL-SNPQQG-----SVLTPPMSPSASSVNGYGG-WPQPNVPTLHLPGSS----VQASRLRAELNARDMPVEDSPRISDYEGQLLNDFSPLSTQARMNAAAAVISGGGNTTTRSGKYKSHGINTVAPTNLEDLFASEVTSPRVAVHEPSIFSQMSPQMQAHKTAHAYIQIQNQMLPPINTQAFSQGIKQM------SPGHSLMQSPFQSSSYGLGSPGRMSPRCVDVERHNTCGSPLSPAMAATLNSRIAAFVQRDKRSHSSRDLGANVTPNSWSDWGSPTGKVDWGVQGEELSKLRKSASFGPRSYEEPDLSWVQTLVKETTPDGKDGGNVGCSGETPHKGQIENVDHSVLGAWIE-QMQLDQ

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
1101	33		66		0.997452
1106		66		33	0.997452
1320			11	88	0.923564
1473		11	88		0.923564
1505	14	71			0.984337
1547		83	16		0.994512
2579	12			87	0.992554
2666		11	88		0.923564
2835		3	84	12	1.0
2843		87	12		1.0
2849	12			87	1.0
2977		91		8	0.999807
3108	85			14	0.993533
3118	14			85	0.993533
3119	14			85	0.993533
3120	14		85		0.993533
3281	75		25		0.996473
3303			33	66	0.997452
3352			33	66	1.0
3353			33	33	0.997753
3390		16	83		0.994512
3424	14		85		0.993533

SSRs (tot: 1)

Start position	End position	Sequence	Length
2402	2414	ACAG ACAG ACAG A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain