SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2497

Length: 3807 nt

UniGene Fasta

>sp_v3.0_unigene2497
CAGGTCTGAGGCTCGGATATTTAAGCAAATTCAGGTTCTGGAAGATTGGATTTTGAACATTTTCGGAGACATTTGCGACTCGGAGCACAGGGCTAGAGCAATTTAAAGGTTTTAAGCGGTTATCTGGAGGCTCGGATTCGGACGTTTTTGGTTCCACAGGTTCGGCATTTTACTGTTTTCAGTTTCTTCCACGGGCTCGTGAATGTAAGCGCTAGATTTGGGAACCTCCATCTCCTTTGGCATGTCTGGAGGTCTGGAATTCGGATATTTTTAAAAATCTCGGGTTCAAATCATCAGGACTGCAATGCTGCGTGGGAGCTTGGATTTGTGTTACCAGTATAGGTTTTGCCATTTTAAGTCTCGGCTTTGAGCGATTGACTGTGCCACATCAGAGGTCTGGCGTCAAGGACTTTTGTTCCTGGGGAATCAGCTTGAAGCGATATTTGCTTATTTCAGGTTTTCTTCGCGGTTTCGCCATATGTTTATTGTGCTCCGTCTGTCAGATTTCGAGGCAGAGATTCGGGAGGCTTGATTTCTCCAGCTTTTTTGCACTTCAAATTTAATCTGTGCAGCCTCGAAGGCGATTACTTGACATACATAGTGGTACCAGATATTTTTGATGAAAAGTCGACGAAACCAGAAATTTAATGACAAAGAATTCTTGGCCAGAAAATTTATTACAAATCAATTAAGTTTTTTTTAATAGCCCAGCAGACGTATAAGCTCCAAGTGGGCGGAGAAATCACAAAAATAGATCAGTTGAAATTGAAAGCGCACATTACAGTGCCGAGGCTGCTGCCTAATAGCAGTATGATGGTGCATTGTAAAGTACTTCCAAGTTCTTCTAAGTATTTAGTTCGGAGTGCCTCTTATTGACATTTGAAAGAAGCAAACTGGTGAATTGATTCTATAAGAGACATTCAGAATGTCACGTTGGTGCTCTGCAGTGTTTTCTACGGTGTCGAGTATAATTGGCTAAAGGATCAACCCTTGAATATATATTGGGTTTCTTATTCCAGCTCGGAGGATGATCCTCTTATGTTTTCTTGTGCCATTTTGGAACGATTGATTGTTAGATTCCATCAGGACAACAGCATTTCAAGTGATGGAGTTCAAAAACAGATCTCTGAGGTTTCAAGATGATTTGGGTGGTAAAGTGTCCACCTGGGGAAAGAAGGATGAGGGTAATAAGGCAAACTTTGAATCATTTCAGGTAGTATCTGCCAAACCTTTGAAAAAGTCTAATGGCTTGGTGGATATGGGCAATCCATTGCATTCTGGGAAAACCAAAGTATTTGCTGAGGATTATCAGTCTCTGGCAAAGAGGATATTTGACCCGGGAAGTGAACTGGTTCAGAGGTGGAATAAGATATTTCTCATCGCTTGCCTAGTTGCTCTGTTTCTTGATCCTCTCTACTTCTACCTGCCTTTATTTAACAGTACTGCTTCATGTATGAAAGTGGATATGAATCTGGAAATTACTGTCACTGTTTTTCGTTCAATCACGGACTTATTCTATATCTTGCATATGATTCTAAAGTTTCGTACTGCATTTATTGCTCCAAGTTCGAGGGTTTTTGGAAGGGGTGAACTGGTTGTGGATCCTAAACAGATTGCATGGAGATATTTTAAGGGGGGTTTCCTTCTAGATCTTCTAGCAACTTTGCCCCTTCCCCAGTTTGTCATCTGGATCCTCATACCAGTTGCACGGAACTCAAGTGCTGATCACACAAAGAATGCCCTATCTTTGATCGTTCTCCTTCAATATCTTCCTAGGTTATATCTGATTTTTCCTTTGACTTCCCAAATCGTTAGAACAACTGGGGTTGTGACCAAGACTGCATGGGCTGGAGCTGCATACAACCTACTACTCTATATGATAGCCAGCCATGTTTTAGGTGCTTCATGGTATTTACTATCCATTGAACGTCAAAATACATGTTGGCGGACAGAATGTAGAAAGGAACATGGAACCTTAAACCTACAGAATTGCAATCTTGACTATTTAGATTGTCGCAGTTTGAATGATAATCTCAGGCCTCTTCGTGAACAGTGGAATGAAAATACTACTGTATGGGCAAAATGTAATGCAAGCGATGACAGCATCAGTTTTCAATTTGGAATTTTTGGAGATGCTATGACAAGTGGGATCGTCTCTTCAAAATTTATGGAAAAATATTTCTACTGCTTATGGTGGGGCTTAAGGAATCTAAGTTCCCTGGGACAAAATTTAGCGACAAGCACTTACATTGGAGAGACTTTGTTTGCTATCCTCATTGCAAATCTTGGTTTGGTATTATTTGCACACCTGATTGGGAACATGCAGACCTATTTGCAATCTCTAACAATTAGGCTTGAAGAGTGGAGAGTTAAGAGAAGGGATACAGAAGAATGGATGAAACACCGCCAACTTCCATATGATCTACGCGAACGTGTTCGTCGTTATGTTCAGTACAAATGGATTGCCACACGTGGAGTTGATGAAGAGGCACTTTTGCGGAGCTTACCTACAGATCTCCGTCGTGATATACAACGACACTTATGTTTGAACCTTGTACGGCGGGTCCCTTTTTTCTCACAAATGGATGATTTGCTTCTTGATGCTATATGTGAGCGCTTGCAGTCTGCACTTAGCACTGAAGGAACATATATTGTTCGGGAAGGAGATCCAGTGACTGAAATGCTCTTCATCATCCGTGGGTATTTAGAGAGTACAACCACCAATGGGGGTAGAAGTGGCTTTTTCAATTCAATTACATTGGGTCCTGGTGAGTTCTGTGGTGAAGAACTGCTCACTTGGGCTTTGGATCCAAAATCTAGTTTAAACTTGCCAGCTTCTACAAGGACAGTTAAAACTTTGGTGGAAGTGGATGCATTTGCACTGAGGGCAGAAGATTTGAAGTTTGTTGCAAATCAATTCAGGCGTTTGCACAGCAAGAAGCTTCAACATACATTTCGTTTCTATTCTCACCAATGGAGGACATGGTCAGCCTGTTTTATACAAGCAGCTTGGCGGCGGTACAAAAGAAGAAAGATGGCAGCAGATCTTCAGAGGAAGGAGAGTTTCTACTATGATGAAAGGCCAGAATTCAGTCCTACAAGTTACACCACCATTCCGCCAAAAGATGACACTAGTACAGACAATGGTGGTACCTCGGTTGCAGCCATGGCCAAAGTTCCTCACCATAATCCAAGTCTAGGGGCCACAATATTGGCCTCTCGATTTGCTGCAAATACAAGGAGAGGGGCTCAAAGGCTCAAGGCTGTCAATTCTGATTGTTCAACTAATCAACTGCCCAAGTTACAGAAGCCCGATGAGCCAGATTTCTTTGCTGAACCTGATGATGAATAATATGCAGCAGTAGTTACATGCCTAGTGGGGCAGTTTTTCTCATCCTCAAGTGAAGCACCCATCCGCAGTGAAAAGCTTTGAAAATTCAAAAAGTGCAGCTTGTCATATCATGAGGTTCTGTGCCTATCTGCAATGACACTTTCTAAGATATCAAAAAGCTTATATGGATGTAAAGTACCTCAGAAGAAATTTGTACCATTCAGCTATGCCTTAAATTTCATATCTTGTTTCTCTTCTTTAAATTATTGTGGTCTCCTAGAATGTGAGATTTGGATTGCGTTTCATCTTGGAAGAATGAGTTGCAATCCATGTATCATATGACATTTTCCTTCTGGTTTCTAACCCTTTCCTAATTTGGCAGCTTTTCGGTGCATCTTCACTTGATTTTCAATAGGTTTTTTTTGAACATTGTAAGTCATTGACAAGACAAGTCAGGTTTGCTGAAAGGTTCAACG

Ace file of the UniGene sp_v3.0_unigene2497

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cyclic nucleotide gated channel [Arabidopsis thaliana] sp\|Q9SJA4.2\|CNG14_ARATH RecName: Full=Probable cyclic nucleotide-gated ion channel 14; AltName: Full=Cyclic nucleotide- and calmodulin-regulated ion channel 14 dbj\|BAF00079.1\| putative cyclic nucleoti	-	-	0.0	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	24%
Sma3	Cyclic nucleotide-gated ion channel, putative	-	-	4.333e-36	-

Source	Gene names
Sma3	ACBK1; AT5G57940; ATCNGC11; ATCNGC12; At1g01340; At1g15990; At1g19780; At2g23980; At2g24610; At2g28260; At2g46430; At2g46440; At2g46450; At3g48010; At4g01010; At4g30360; At4g30560; At5g14870; At5g53130; At5g57940; CBP4; CBP7; CBT1; CNGC-A; CNGC-C; CNGC1;

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	apical plasma membrane	GO:0016324	Cellular Component	-
Sma3	ion channel activity	GO:0005216	Molecular Function	-
Sma3	intracellular cyclic nucleotide activated cation channel activity	GO:0005221	Molecular Function	-
Sma3	voltage-gated potassium channel activity	GO:0005249	Molecular Function	-
Sma3	cation channel activity	GO:0005261	Molecular Function	-
Sma3	calmodulin binding	GO:0005516	Molecular Function	-
Sma3	cAMP binding	GO:0030552	Molecular Function	-
Sma3	cGMP binding	GO:0030553	Molecular Function	-
Sma3	ion transport	GO:0006811	Biological Process	-
Sma3	potassium ion transport	GO:0006813	Biological Process	-
Sma3	calcium ion transport	GO:0006816	Biological Process	-
Sma3	cellular calcium ion homeostasis	GO:0006874	Biological Process	-
Sma3	response to fungus	GO:0009620	Biological Process	-
Sma3	pollen tube growth	GO:0009860	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	Cyclic nucleotide-binding domain	IPR000595	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Adenosine deaminase/editase	IPR002466	-	-
Sma3	Potassium channel, voltage-dependent, EAG/ELK/ERG	IPR003938	-	-
Sma3	Ion transport	IPR005821	-	-
Sma3	Ribonuclease H1, N-terminal	IPR011320	-	-
Sma3	RmlC-like jelly roll fold	IPR014710	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Cyclic nucleotide-binding, conserved site	IPR018488	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G24610.1	ATCNGC14, CNGC14 cyclic nucleotide-gated channel 14 chr2:10457105-10460351 FORWARD LENGTH=726	59%
RefSeq	Arabidopsis thaliana	NP_850056.1	cyclic nucleotide gated channel [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002325086.1	predicted protein, partial [Populus trichocarpa]	66%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPV4

Fln msg: your sequence is longer than subject: 749 - 659

Fln protein: MEFKNRSLRFQDDLGGKVSTWGKKDEGNKANFESFQVVSAKPLKKSNGLVDMGNPLHSGKTKVFAEDYQSLAKRIFDPGSELVQRWNKIFLIACLVALFLDPLYFYLPLFNSTASCMKVDMNLEITVTVFRSITDLFYILHMILKFRTAFIAPSSRVFGRGELVVDPKQIAWRYFKGGFLLDLLATLPLPQFVIWILIPVARNSSADHTKNALSLIVLLQYLPRLYLIFPLTSQIVRTTGVVTKTAWAGAAYNLLLYMIASHVLGASWYLLSIERQNTCWRTECRKEHGTLNLQNCNLDYLDCRSLNDNLRPLREQWNENTTVWAKCNASDDSISFQFGIFGDAMTSGIVSSKFMEKYFYCLWWGLRNLSSLGQNLATSTYIGETLFAILIANLGLVLFAHLIGNMQTYLQSLTIRLEEWRVKRRDTEEWMKHRQLPYDLRERVRRYVQYKWIATRGVDEEALLRSLPTDLRRDIQRHLCLNLVRRVPFFSQMDDLLLDAICERLQSALSTEGTYIVREGDPVTEMLFIIRGYLESTTTNGGRSGFFNSITLGPGEFCGEELLTWALDPKSSLNLPASTRTVKTLVEVDAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSHQWRTWSACFIQAAWRRYKRRKMAADLQRKESFYYDERPEFSPTSYTTIPPKDDTSTDNGGTSVAAMAKVPHHNPSLGATILASRFAANTRRGAQRLKAVNSDCSTNQLPKLQKPDEPDFFAEPDDE*

Protein Length: 750

Fln nts: CAGGTCTGAGGCTCGGATATTTAAGCAAATTCAGGTTCTGGAAGATTGGATTTTGAACATTTTCGGAGACATTTGCGACTCGGAGCACAGGGCTAGAGCAATTTAAAGGTTTTAAGCGGTTATCTGGAGGCTCGGATTCGGACGTTTTTGGTTCCACAGGTTCGGCATTTTACTGTTTTCAGTTTCTTCCACGGGCTCGTGAATGTAAGCGCTAGATTTGGGAACCTCCATCTCCTTTGGCATGTCTGGAGGTCTGGAATTCGGATATTTTTAAAAATCTCGGGTTCAAATCATCAGGACTGCAATGCTGCGTGGGAGCTTGGATTTGTGTTACCAGTATAGGTTTTGCCATTTTAAGTCTCGGCTTTGAGCGATTGACTGTGCCACATCAGAGGTCTGGCGTCAAGGACTTTTGTTCCTGGGGAATCAGCTTGAAGCGATATTTGCTTATTTCAGGTTTTCTTCGCGGTTTCGCCATATGTTTATTGTGCTCCGTCTGTCAGATTTCGAGGCAGAGATTCGGGAGGCTTGATTTCTCCAGCTTTTTTGCACTTCAAATTTAATCTGTGCAGCCTCGAAGGCGATTACTTGACATACATAGTGGTACCAGATATTTTTGATGAAAAGTCGACGAAACCAGAAATTTAATGACAAAGAATTCTTGGCCAGAAAATTTATTACAAATCAATTAAGTTTTTTTTAATAGCCCAGCAGACGTATAAGCTCCAAGTGGGCGGAGAAATCACAAAAATAGATCAGTTGAAATTGAAAGCGCACATTACAGTGCCGAGGCTGCTGCCTAATAGCAGTATGATGGTGCATTGTAAAGTACTTCCAAGTTCTTCTAAGTATTTAGTTCGGAGTGCCTCTTATTGACATTTGAAAGAAGCAAACTGGTGAATTGATTCTATAAGAGACATTCAGAATGTCACGTTGGTGCTCTGCAGTGTTTTCTACGGTGTCGAGTATAATTGGCTAAAGGATCAACCCTTGAATATATATTGGGTTTCTTATTCCAGCTCGGAGGATGATCCTCTTATGTTTTCTTGTGCCATTTTGGAACGATTGATTGTTAGATTCCATCAGGACAACAGCATTTCAAGTG_-_ATGGAGTTCAAAAACAGATCTCTGAGGTTTCAAGATGATTTGGGTGGTAAAGTGTCCACCTGGGGAAAGAAGGATGAGGGTAATAAGGCAAACTTTGAATCATTTCAGGTAGTATCTGCCAAACCTTTGAAAAAGTCTAATGGCTTGGTGGATATGGGCAATCCATTGCATTCTGGGAAAACCAAAGTATTTGCTGAGGATTATCAGTCTCTGGCAAAGAGGATATTTGACCCGGGAAGTGAACTGGTTCAGAGGTGGAATAAGATATTTCTCATCGCTTGCCTAGTTGCTCTGTTTCTTGATCCTCTCTACTTCTACCTGCCTTTATTTAACAGTACTGCTTCATGTATGAAAGTGGATATGAATCTGGAAATTACTGTCACTGTTTTTCGTTCAATCACGGACTTATTCTATATCTTGCATATGATTCTAAAGTTTCGTACTGCATTTATTGCTCCAAGTTCGAGGGTTTTTGGAAGGGGTGAACTGGTTGTGGATCCTAAACAGATTGCATGGAGATATTTTAAGGGGGGTTTCCTTCTAGATCTTCTAGCAACTTTGCCCCTTCCCCAGTTTGTCATCTGGATCCTCATACCAGTTGCACGGAACTCAAGTGCTGATCACACAAAGAATGCCCTATCTTTGATCGTTCTCCTTCAATATCTTCCTAGGTTATATCTGATTTTTCCTTTGACTTCCCAAATCGTTAGAACAACTGGGGTTGTGACCAAGACTGCATGGGCTGGAGCTGCATACAACCTACTACTCTATATGATAGCCAGCCATGTTTTAGGTGCTTCATGGTATTTACTATCCATTGAACGTCAAAATACATGTTGGCGGACAGAATGTAGAAAGGAACATGGAACCTTAAACCTACAGAATTGCAATCTTGACTATTTAGATTGTCGCAGTTTGAATGATAATCTCAGGCCTCTTCGTGAACAGTGGAATGAAAATACTACTGTATGGGCAAAATGTAATGCAAGCGATGACAGCATCAGTTTTCAATTTGGAATTTTTGGAGATGCTATGACAAGTGGGATCGTCTCTTCAAAATTTATGGAAAAATATTTCTACTGCTTATGGTGGGGCTTAAGGAATCTAAGTTCCCTGGGACAAAATTTAGCGACAAGCACTTACATTGGAGAGACTTTGTTTGCTATCCTCATTGCAAATCTTGGTTTGGTATTATTTGCACACCTGATTGGGAACATGCAGACCTATTTGCAATCTCTAACAATTAGGCTTGAAGAGTGGAGAGTTAAGAGAAGGGATACAGAAGAATGGATGAAACACCGCCAACTTCCATATGATCTACGCGAACGTGTTCGTCGTTATGTTCAGTACAAATGGATTGCCACACGTGGAGTTGATGAAGAGGCACTTTTGCGGAGCTTACCTACAGATCTCCGTCGTGATATACAACGACACTTATGTTTGAACCTTGTACGGCGGGTCCCTTTTTTCTCACAAATGGATGATTTGCTTCTTGATGCTATATGTGAGCGCTTGCAGTCTGCACTTAGCACTGAAGGAACATATATTGTTCGGGAAGGAGATCCAGTGACTGAAATGCTCTTCATCATCCGTGGGTATTTAGAGAGTACAACCACCAATGGGGGTAGAAGTGGCTTTTTCAATTCAATTACATTGGGTCCTGGTGAGTTCTGTGGTGAAGAACTGCTCACTTGGGCTTTGGATCCAAAATCTAGTTTAAACTTGCCAGCTTCTACAAGGACAGTTAAAACTTTGGTGGAAGTGGATGCATTTGCACTGAGGGCAGAAGATTTGAAGTTTGTTGCAAATCAATTCAGGCGTTTGCACAGCAAGAAGCTTCAACATACATTTCGTTTCTATTCTCACCAATGGAGGACATGGTCAGCCTGTTTTATACAAGCAGCTTGGCGGCGGTACAAAAGAAGAAAGATGGCAGCAGATCTTCAGAGGAAGGAGAGTTTCTACTATGATGAAAGGCCAGAATTCAGTCCTACAAGTTACACCACCATTCCGCCAAAAGATGACACTAGTACAGACAATGGTGGTACCTCGGTTGCAGCCATGGCCAAAGTTCCTCACCATAATCCAAGTCTAGGGGCCACAATATTGGCCTCTCGATTTGCTGCAAATACAAGGAGAGGGGCTCAAAGGCTCAAGGCTGTCAATTCTGATTGTTCAACTAATCAACTGCCCAAGTTACAGAAGCCCGATGAGCCAGATTTCTTTGCTGAACCTGATGATGAATAA___TATGCAGCAGTAGTTACATGCCTAGTGGGGCAGTTTTTCTCATCCTCAAGTGAAGCACCCATCCGCAGTGAAAAGCTTTGAAAATTCAAAAAGTGCAGCTTGTCATATCATGAGGTTCTGTGCCTATCTGCAATGACACTTTCTAAGATATCAAAAAGCTTATATGGATGTAAAGTACCTCAGAAGAAATTTGTACCATTCAGCTATGCCTTAAATTTCATATCTTGTTTCTCTTCTTTAAATTATTGTGGTCTCCTAGAATGTGAGATTTGGATTGCGTTTCATCTTGGAAGAATGAGTTGCAATCCATGTATCATATGACATTTTCCTTCTGGTTTCTAACCCTTTCCTAATTTGGCAGCTTTTCGGTGCATCTTCACTTGATTTTCAATAGGTTTTTTTTGAACATTGTAAGTCATTGACAAGACAAGTCAGGTTTGCTGAAAGGTTCAACG

Fln Alignment:

Contig2497___FMEKYFYCLWWGLRNLSSLGQNLATSTYIGETLFAILIANLGLVLFAHLIGNMQTYLQSLTIRLEEWRVKRRDTEEWMKHRQLPYDLRERVRRYVQYKWIATRGVDEEALLRSLPTDLRRDIQRHLCLNLVRRVPFFSQMD-DLLLDAICERLQSALSTEGTYIVREGDPVTEMLFIIRGYLESTTTNGGRSGFFNSITLG
B8LPV4______________FWIRYISCIYWSITTLSTVGYGDIHAVNTREMIFIIFYVFFNLGLTAYLIGNMTNLVVQGTSRTMQFRNKIRAASNFGNRNDLPPKLKEQILSYMCLKFRAEE-LQQQKVMEELPKSIRTSISRCLFIETVETVYLFQGVSTEFILDLVTEMHAEYFPPKEDILLQNETP-SDIYLLVSGEVEMLTCENGNEQVVESLRAG

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
915	80			20	0.995493
919	80	20			0.995493
925	80		20		0.995493
926	80	20			0.995493
1095			80	20	0.995493
1096		80		20	0.995493
1788	25		75		0.996473
1867		66		33	1.0
2053			75	25	0.996473
3206			66	33	0.997452
3211	66		33		0.997452
3532	18		81		0.999994
3589	16			66	0.988813
3592	20			80	0.995493
3600		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain