SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2495

Length: 1327 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene2495 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	beclin 1 protein [Glycine max]	-	-	0.0	62%
FL-Next	sp=Beclin-1-like protein; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	61%
Sma3	Beclin 1 protein	-	-	5.072e-36	-

Source	Gene names
Sma3	APG6; At3g61710; CHLREDRAFT_195652; F15G16.100; GSVIVT00027022001; GSVIVT00027024001; LOC_Os03g15290; LOC_Os03g44200; MICPUN_95396; OSJNBa0038E17.21; OSTLU_7055; Os01g0681400; Os03g0258500; Os03g0644000; OsI_03277; OsI_03280; OsI_03281; OsI_10816; OsI_127

Source	GOs	Term	Type	e value	Identity
Sma3	autophagy	GO:0006914	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	O-acyltransferase, WSD1, N-terminal	IPR004255	-	-
Sma3	Autophagy-related protein 6	IPR007243	-	-
Sma3	O-acyltransferase, WSD1, C-terminal	IPR009721	-	-
Sma3	TonB box, conserved site	IPR010916	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G61710.1	ATATG6, ATG6, BECLIN1, AtBECLIN1 AUTOPHAGY 6 chr3:22839477-22842253 REVERSE LENGTH=517	61%
RefSeq	Arabidopsis thaliana	NP_567116.1	Beclin-1-like protein [Arabidopsis thaliana]	61%
RefSeq	Populus trichocarpa	XP_002302626.1	predicted protein [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9M367

Fln msg: your sequence is shorter than subject: 301 - 517

Fln protein: EKVEEEEKKLKAAIGEIEKQRMDARHQLQELEQKSKRFEEREERFWHEFNDYSLQLTTYQEERDAILAKIEVTQTQLEQLKHTNVLNDAFRISYDGDFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMATHSGAKFSYRIIPMGSYPTILDSKNNRYELFGPVNLFWSTRYDKAMTFFLICLKEFGDYANAKDRASNIPLDKCFKFPYKIENDKVDNFIITQSFNKTENWTKALKYMLCDLKWALYWFIANFAFQSPGTAITASGPSVLHAKVNSERNKQNVRSSRSQHDAGAKS*

Protein Length: 302

Fln nts: AGAAAAGGTTGAAGAAGAAGAAAAGAAATTAAAAGCAGCAATAGGGGAAATTGAAAAACAACGCATGGATGCCAGACATCAACTTCAGGAACTGGAACAAAAGTCGAAAAGATTTGAAGAACGAGAAGAGAGGTTTTGGCACGAATTCAATGACTACAGTTTGCAGCTAACTACATACCAGGAAGAAAGAGATGCTATTTTGGCAAAGATTGAGGTGACCCAAACACAGTTGGAACAATTGAAGCATACAAATGTACTAAATGATGCCTTTCGTATTTCGTATGATGGTGATTTTGGAACAATAAACAACTTTAGACTTGGCCGCCTTCCTAAGATACCTGTTGAATGGGATGAAATAAATGCAGCATGGGGCCAAGCATGCCTTCTACTTCATACAATGGCCACGCATTCTGGAGCTAAATTCTCATATCGAATCATTCCAATGGGAAGTTATCCAACTATTCTTGACAGCAAAAACAATAGATATGAACTGTTTGGTCCGGTAAATCTCTTCTGGAGCACTCGCTATGATAAAGCAATGACATTCTTTTTAATATGTCTTAAGGAGTTTGGAGACTATGCAAATGCAAAAGACAGAGCCTCAAACATTCCACTAGACAAGTGCTTCAAATTTCCGTACAAGATTGAAAACGATAAGGTGGATAATTTTATCATCACTCAAAGCTTTAATAAGACAGAGAATTGGACAAAGGCCTTGAAGTATATGTTATGTGATCTCAAATGGGCTCTGTATTGGTTTATTGCTAACTTTGCTTTTCAGTCTCCTGGTACTGCTATAACGGCTTCAGGGCCAAGCGTGTTGCATGCAAAAGTTAATTCTGAACGTAATAAGCAAAATGTACGTTCATCACGCTCACAGCATGATGCTGGTGCAAAATCATAG___GCTGATGAAGCTTTGTTACTGATCATTAAGGGTGTATATAATTCTCCTTTTAAATGTCCCCTTTTCGTTTCTCAATTTGGCAATTTTCTTTTAGTTATAGCATATACTCATACACACTCACTGATACAAACCTAATACAGGGAGGAATAGACAAATATCAGCCACGTTTATTTGCAAGGTGGCTACCCGTCCAATAGGCGGTGCTAAAAAATAGTCCAAAAAATTTCATTGCTTTTAGTAGTTATCACAGTGATACGAGTTTAATTGATTTATTGGCCATTGAGTCTGATGGCCTTGATAGTAGGAAGAGGATAGCAACATGATCAACATAAGCCTGCAGTGTTCATCCAACTCAATCTTTAGGTAGCTGATTTATCATATATGTTTTATGCATTTAAGCTGCATGAATCTATTTTCTTTCAC

Fln Alignment:

Contig2495___QRMDARHQLQELEQKSKXXXXXXXXXXXXFNDYSLQLTTYQEERDAILAKIEVTQTQLEQLKHTNVLNDAFRISYDGDFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMATHSGAKFS--YRIIPMGSYPTILDSKNNRYELFGPVNLFWSTRYDKAMTFFLICLKEFGDYANAKDRASNIPLDKCFKFPYKIENDKVDNFIITQSFNKTENWTKALKYMLCDLKWALYWFIANFAFQSPGTAIT----ASGPSVLHAKVNSERNKQNVRSS
Q9M367______________QNAEVNHQLKELEFKGNRFNELEDRYWQEFNNFQFQLIAHQEERDAILAKIEVSQAHLELLNKTNVLIDAFPIRNDGEFGTINNFRLGRLPAIKVEWDEINAAWGQACLLLHTMCNYFRPKFQCQVKIQPMGSYPRIVDSNNETYELFGPVNLFWSTRYDKAMTLYLMCLKDFADFANSKDQENNIPPDNCLNLPYKIEKDKVLGYSITQSFNKQESWTKALKYTLCNLKWALYWFVGNTNFQPLSATVSLPSNISAAGSLYAKRGPDSSKPSCKKT

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
695	85			14	0.993533
696	85		14		0.993533
697	14			85	0.993533
698			14	85	0.993533
705	85	14			0.993533
706	14	85			0.993533
707	14			85	0.993533
708			14	85	0.993533
712	14			85	0.993533
713	85	14			0.993533
715	14			85	0.993533
716		14	85		0.993533
739		33		66	1.0
740		33	66		1.0
745	20			80	0.995493
747		80		20	0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
1306	1317	TTC TTC TTC TTC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain