SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2479

Length: 1177 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene2479

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Expansin n=6 Tax=Pinaceae RepID=Q9SWY1_PINTA	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Sma3	Expansin	-	-	-

Source	Gene names
Sma3	AT1G69530; At1g26770; At1g69530; At2g28950; At2g37640; At2g39700; At2g40610; At3g55500; At5g02260; At5g05290; At5g56320; CDK3; CDK4; CDK5; CDK6; CDK7; Cs-EXPA1; Cs-EXPA2; EXP; EXP03; EXP1; EXP10; EXP11; EXP12; EXP13; EXP14; EXP15; EXP16; EXP18; EXP2; EXP3

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	structural constituent of cell wall	GO:0005199	Molecular Function	-
Sma3	syncytium formation	GO:0006949	Biological Process	-
Sma3	plant-type cell wall organization	GO:0009664	Biological Process	-
Sma3	response to gibberellin stimulus	GO:0009739	Biological Process	-
Sma3	plant-type cell wall loosening	GO:0009828	Biological Process	-
Sma3	response to red light	GO:0010114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Expansin	IPR002963	-	-
Sma3		IPR005132	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	Expansin/pollen allergen, DPBB domain	IPR007112	-	-
Sma3	Pollen allergen/expansin, C-terminal	IPR007117	-	-
Sma3	Expansin/Lol pI	IPR007118	-	-
Sma3		IPR014734	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G40610.1	ATEXPA8, EXP8, ATEXP8, ATHEXP ALPHA 1.11, EXPA8 expansin A8 chr2:16949121-16950472 REVERSE LENGTH=253	77%
RefSeq	Arabidopsis thaliana	NP_181593.1	expansin A8 [Arabidopsis thaliana]	77%
RefSeq	Populus trichocarpa	XP_002319409.1	hypothetical protein POPTRDRAFT_834669 [Populus trichocarpa]	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LN89

Fln msg:

Fln protein: MELVKSIVMIPLLTLIWLLTGVHGFGDWEFGHATFYGGIDASGTMGGACGYGNLYSQGYGTDTAALSTALFNNGLSCGACYEMKCIDDPQWCLPASVTVTATNFCPPNNALPNNNGGWCNPPLRHFDMAEPAFEKIAKYKSGIVPILYRRVPCLRKGGIRFTINGLTYFNLVLISNVGGAGDVRAVSIKGSNTSWQPMSRNWGQNWQSNSFLNGQSLSFKVTTSDGRTIVSYNTAPSNWQFGQTFEGSQL*

Protein Length: 252

Fln nts: CTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGAAAGAAATAAGTTCTTCTCATTTGTTTAAGTCATTTTTTATTGCTTCACATCTCCTTGATTCTCAGGATTTTCAAAGAGATCC_-_ATGGAACTGGTTAAGAGCATTGTAATGATCCCATTGTTGACATTGATTTGGTTATTAACTGGAGTTCATGGATTTGGCGATTGGGAATTCGGTCATGCCACATTCTACGGTGGCATTGATGCTTCTGGGACAATGGGAGGAGCGTGTGGATATGGGAACCTGTACAGCCAAGGTTACGGAACTGATACTGCTGCTCTTAGCACTGCTTTGTTCAACAACGGGCTTAGCTGCGGAGCGTGCTACGAAATGAAATGTATCGATGACCCGCAGTGGTGTTTGCCGGCCAGTGTGACCGTCACAGCGACCAACTTCTGCCCGCCCAACAACGCCCTCCCCAACAACAACGGTGGATGGTGCAATCCACCCCTGCGGCACTTTGACATGGCGGAGCCAGCCTTTGAAAAGATCGCCAAGTATAAGAGTGGGATCGTTCCCATTCTCTACAGAAGGGTCCCCTGCTTGAGAAAGGGAGGAATTCGCTTCACCATTAACGGTCTCACATACTTCAACCTGGTGCTCATCTCCAATGTTGGGGGAGCTGGAGATGTCCGGGCGGTTTCTATAAAGGGGTCAAATACTAGTTGGCAGCCGATGTCACGCAACTGGGGACAGAACTGGCAAAGCAATTCCTTCTTGAACGGGCAGAGCCTGTCCTTCAAGGTCACCACCAGTGATGGGCGGACAATTGTTTCATATAACACTGCTCCTTCTAACTGGCAATTCGGCCAGACATTCGAGGGAAGCCAACTTTAA___GAAATGCCAGAGGCGAATGAATGTGTATAGCCATCGATCAATAATTTGGGATGATGCGGTGTACTCCAGTCACCGGTGTCCCCGTTATTATCATTGTTGAATTGTAGTATGTATCTGGATTGACCGAGATCAATGTTAGAGGAGTCTCTATAGCCATGTTCCTAGGAAGAATTGTCATTGTCATGTCCATTCCGTGTAATAATTTTCTTCCAAAATATATGTGCATAGCTTTCAAAACGGCGCCGAGTATATGGGGTTTCGATGAGAGCTTCCAAAATAATAACTTTTGGTTTATTGCGTTCACT

Fln Alignment:

Contig2479___RSMELVKSIVMIPLLTLIWLLTGVHGFGDWEFGHATFYGGIDASGTMGGACGYGNLYSQGYGTDTAALSTALFNNGLSCGACYEMKCIDDPQWCLPASVTVTATXXXXXXXXXXXXXGGWCNPPLRHFDMAEPAFEKIAKYKSGIVPILYRRVPCLRKGGIRFTINGLTYFNLVLISNVGGAGDVRAVSIKGSNTSWQPMSRNWGQNWQSNSFLNGQSLSFKVTTSDGRTIVSYNTAPSNWQFGQTFEGSQL
B8LN89______________RSIELVKSIALASLLTIIWLITGAHGYGDWESAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNDGLSCGACYEMQCNDDPQWCLPGTIMVTATNFCPPNNALPNNDGGWCNPPLQHFDMAEPSYLKIAKYRSGIVPILYRRVPCLRKGGIRFTVNGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNSYLNGQSLSFQVTTSDGRTVVSYNAAPSNWQFGQTFEGGQL

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
647		33		66	0.997452
650		33		66	1.0
651	25		50		0.995533
652		25	75		0.996473
653			50	50	1.0
654		25	50		0.995533
655	25		75		0.996473
657		25	75		0.996473
660		8	75	16	0.99999
662	75			8	0.99999
664	75	16	8		0.99999
670	16	8	66	8	0.999991
671		8	75	16	0.99999
689	16		83		0.999991
743		83		16	0.999991
787		85		14	0.999981
795		5	84	10	0.999846
799			88	11	0.999937
801	88			11	0.999937
804	83	16			1.0
814	89		10		0.999919
822	15		78	5	1.0
855		14	85		0.999981
874	85		14		0.999981
929		83		16	0.999991
1002			10	90	0.90298
1008			90	10	0.90298
1017		10	90		0.90298
1021	10	90			0.90298
1045	10			90	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain