SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2462

Length: 1568 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene2462

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Heparanase-like protein 2 n=4 Tax=Andropogoneae RepID=B6SRR5_MAIZE	-	-	0.0	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	59%
Sma3	Heparanase-like protein 3	-	-	1.942e-12	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:3.2.-.-	-	1.942e-12	-

Source	Gene names
Sma3	AT5G61250; At5g07830; At5g34940; At5g61250; F13G24.30; GSVIVT00006396001; GSVIVT00016263001; GSVIVT00016264001; GSVIVT00030073001; GSVIVT00032761001; GSVIVT00032762001; LOC_Os03g11320; LOC_Os12g38920; MAF19.29; MFB13.2; MGG23.2; OJ1579_C03.21; OSJNBa0032L

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	lysosomal membrane	GO:0005765	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	hydrolase activity, acting on glycosyl bonds	GO:0016798	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 79	IPR005199	-	-
Sma3	Nodulin-like	IPR010658	-	-
Sma3	Calmodulin-binding domain, plant	IPR012417	-	-
Sma3	Peptidase S1/S6, chymotrypsin/Hap, active site	IPR018114	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G07830.1	AtGUS2, GUS2 glucuronidase 2 chr5:2504168-2506567 FORWARD LENGTH=543	52%
RefSeq	Arabidopsis thaliana	NP_196400.2	Heparanase-like protein 1 [Arabidopsis thaliana]	52%
RefSeq	Populus trichocarpa	XP_002331013.1	predicted protein [Populus trichocarpa]	55%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LM26

Fln msg: your sequence is longer than subject: 424 - 381

Fln protein: MFRFSKGCLTMDRWDKLNKFATKTGSMVAFGLNALYGRYQISADGLWGGPWNSSNARSFIQYTVDHGYKIYAWEFGNELSGSGIGARVSATQYAADVIELHKILKDIYKHKHSHEKPLTVAPDGFFDPNWFQALLQETGSNVLNAVTRHIYNLGAGVDKHLTQKILNPQYLSREATKFRQMQDILQKYGPWASSWVGEAGGAYNGGKHRVSDAFVNSFWYLDQLGMSSTYDTKVYCRQSLIGGNYGLLNTTNFAPNPDYYSALLWHRLMGRGVLSINITGPPYVRTYAHCAKNDTGITLLLINLSNDTKVDILVSAYPNSTMYKRRPNAKESFIHKIKRFVAWAGIKTSKVKDYRMEYHLTPKDGDLHSQTVLLNGAELELTEDGDIPSLDPVMVDSGLPIPVAPSSIAFVSLPGLEISACLQ*

Protein Length: 425

Fln nts: CACCACTGAAAATCAGGTTGGGTGGAACTTTGCAAGACAAACTGATATATGACGTTGGACCTCTGTCACAACCCTGTCATCCTTTTGCTAGGGATGCTTCTAAG_-_ATGTTTAGGTTCTCAAAAGGTTGTCTTACCATGGACAGATGGGACAAACTGAACAAGTTTGCCACAAAAACAGGGTCTATGGTGGCATTTGGCTTAAATGCATTGTATGGTCGGTATCAAATATCTGCGGATGGTCTTTGGGGAGGTCCTTGGAATTCAAGCAATGCTCGCAGCTTTATTCAGTACACAGTCGACCATGGTTATAAGATATATGCATGGGAATTTGGAAATGAGTTGAGTGGAAGTGGCATTGGCGCAAGAGTTAGTGCTACACAATATGCTGCTGATGTAATTGAGCTTCATAAGATTTTGAAAGACATATACAAGCACAAGCATTCTCATGAGAAACCATTAACTGTAGCACCAGATGGATTCTTTGATCCGAACTGGTTTCAAGCGCTTCTTCAAGAGACAGGTTCAAATGTTTTGAATGCTGTCACACGACATATATACAATCTTGGAGCAGGTGTGGATAAGCATTTGACACAAAAGATACTTAATCCGCAATACTTGAGTCGAGAAGCTACAAAGTTCAGACAAATGCAAGATATTTTGCAGAAATATGGCCCTTGGGCAAGCTCCTGGGTCGGAGAAGCAGGTGGAGCTTATAACGGTGGAAAGCATCGTGTCTCAGATGCATTTGTGAATAGTTTTTGGTATTTAGATCAGCTTGGAATGTCATCTACATATGATACTAAAGTTTATTGTAGACAAAGCTTGATTGGTGGTAACTATGGCCTTCTTAACACAACAAATTTTGCACCCAATCCTGATTATTATAGTGCACTGCTTTGGCATCGGTTGATGGGGAGAGGTGTGCTTTCCATCAATATTACAGGGCCACCCTATGTGCGCACATATGCTCATTGTGCAAAGAATGATACTGGAATAACTTTACTCTTGATCAACCTCAGCAACGACACAAAAGTTGATATTCTTGTTTCTGCTTATCCAAATTCTACCATGTACAAGAGAAGACCGAATGCAAAAGAGTCTTTTATACATAAGATTAAGAGATTCGTAGCCTGGGCTGGAATCAAAACATCAAAGGTGAAAGATTATAGAATGGAATACCACTTAACACCAAAAGATGGTGACCTTCATAGTCAAACAGTGCTTTTAAATGGTGCAGAGTTGGAGTTAACTGAAGATGGGGATATTCCTTCGTTAGATCCTGTCATGGTTGATTCTGGGCTACCTATTCCAGTAGCTCCTTCATCTATTGCTTTTGTTTCCTTGCCTGGTCTGGAGATCTCTGCTTGTTTACAGTAG___CAATGGTGTAGATATTTATTTGAAACATCAATAGAGCCTTCTAAATTGGGCTATTTATTGAGGTGTATTTGACCAAGTTACCAACAAATCAAGAAAATGTGTTGCTGATGCATGTTGCCACATTGTTTGTCTCAGGGCACGGATTATATAAATTTGTCCAAAGTTTCGAAGAGTCTTTTAATTTCGATCTTT

Fln Alignment:

Contig2462___MDRWDKLNKFATKTGSMVAFGLNALYGRYQISADGLWGGPWNSSNARSFIQYTVDHGYKIYAWEFGNELSGSGIGARVSATQYAADVIELHKILKDIYKHKHSHEKPLTVAPDGFFDPNWFQALLQETGSNVLNAVTRHIYNLGAGVDKHLTQKILNPQYLSREATKFRQMQDILQKYGPWASSWVGEAGGAYNGGKHRVSDAFVNSFWYLDQLGMSSTYDTKVYCRQSLIGGNYGLLNTTNFAPNPDYYSALLWHRLMGRGVLSINITGPPYVRTYAHCAKNDTGITLLLINLSNDTKVDILVSAYPNSTMYKRRPNAKESFIHKIKRFVAWAGIKTSKVKDYRMEYHLTPKDGDLHSQTVLLNGAELELTEDGDIPSLDPVMVDSGLPIPVAPSSIAFVSLPGLEISAC
B8LM26______________MSRWDALNAFFNKTGAVVAFGLNALNGK-RWKSDGATDGPWDSSNARDFIQYTVDHGHKIKAWELGNELSGSGVGTSISVEQYAADVIELHGILDGIYKDYE--EKPLLIAPDGFFVADWFKEFLNLTGPNIMNVVTHHFYNLGAGVDNDLVEKILNPSYLSQEASTFKGLQAVLQNYGPWSKAWVGETGGAYNSGHNLITNAFVMSFWYLDQLGMASAFSTKSFCRQSLIGGNYGLLNTTTFLPNPDYYSALLWHRLMGTRVLATNSTGTEYLRAYAHCTKSSRGVTLLLINLSRDTGISVQVS----------------------------TGSGTSTDRNSRLEYHLTAKDGDLHSQTVLLNGNILNITPDGEIPSLSAVTVPANRPILVAPLSIAFVNLPYVQFPAC

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
960	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain