SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2458

Length: 1362 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene2458

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Peroxiredoxin, putative n=1 Tax=Ricinus communis RepID=B9SRG0_RICCO	-	-	0.0	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%
Sma3	Peroxiredoxin	-	-	1.475e-15	-

Source	ECs	Term	Type	e value	Identity
Sma3	Peroxiredoxin.	EC:1.11.1.15	-	5.823e-22	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Glutathione metabolism	00480		5.823e-22	%
Sma3	Metabolic pathways	01100		5.823e-22	%

Source	Gene names
Sma3	At1g60740; At1g65970; At1g65980; At3g52960; CHLREDRAFT_157173; CHLREDRAFT_196639; F12P19.13; F12P19.14; F8A5.25; F8J2_130; GSVIVT00016713001; GSVIVT00021685001; LOC_Os01g48420; LOC_Os02g09940; LOC_Os06g42000; MICPUCDRAFT_19224; OJ1117_G01.9; OSJNBa0029G06

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	thylakoid	GO:0009579	Cellular Component	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	peroxiredoxin activity	GO:0051920	Molecular Function	-
Sma3	defense response to bacterium	GO:0042742	Biological Process	-
Sma3	cell redox homeostasis	GO:0045454	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3		IPR012335	-	-
Sma3	Redoxin	IPR013740	-	-
Sma3		IPR017936	-	-
Sma3	Proteinase inhibitor I25, cystatin, conserved site	IPR018073	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G52960.1	Thioredoxin superfamily protein chr3:19639699-19640403 FORWARD LENGTH=234	63%
RefSeq	Arabidopsis thaliana	NP_190864.1	peroxiredoxin-2E [Arabidopsis thaliana]	63%
RefSeq	Populus trichocarpa	XP_002327377.1	predicted protein, partial [Populus trichocarpa]	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NN26

Fln msg:

Fln protein: MASFRILTSALVASRRSSSFARLSFPFASHIHNLTANYISSSSSPSIPFCPQKPADIPIAPTAFKIRAFSIANETIKVGDKLPNATLSYFDREGNFQTVSISELTEGKKIILLAVPGAFTPTCSQKHVPGFIQRADELRAKGVDLIVCIAVNDAFVLKAWADSLGIGGDNSKVLLLSDGNGQFTKAIEVYVDLSDKVVGLGVRLRRYSLLVGNGVVKMLNLEEGRSFTFSGVDDILKVL*

Protein Length: 241

Fln nts: CACTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGAGGAACCGGAGTATCTCCGTTAAAACTGGAAAAAGTGAACTGGTTCGAGTTTTTTCAGATTTCTTTTCCAAGACCCCAGCC_-_ATGGCATCCTTCAGAATCCTCACTTCAGCCTTAGTTGCATCCCGCAGATCTTCTTCTTTCGCTCGTCTTTCATTTCCCTTCGCCTCCCATATCCACAATTTAACAGCAAATTACATTTCCTCTTCTTCTTCACCATCCATCCCCTTCTGCCCGCAAAAACCTGCAGACATCCCAATTGCCCCAACAGCTTTCAAAATCCGCGCTTTCAGTATCGCCAATGAAACAATTAAAGTGGGCGACAAGCTCCCCAACGCAACGCTCTCATATTTCGACAGGGAAGGAAATTTTCAGACGGTTTCCATCTCAGAGCTTACCGAGGGCAAAAAGATTATCCTCCTTGCAGTTCCGGGAGCCTTCACGCCGACTTGTTCTCAAAAGCATGTCCCCGGCTTCATTCAGAGGGCGGACGAGCTGAGGGCTAAGGGCGTGGATTTAATCGTCTGCATTGCCGTAAACGATGCCTTCGTGCTTAAAGCATGGGCGGATTCTCTTGGGATTGGAGGAGATAATAGCAAAGTTCTGTTGCTCTCTGATGGCAACGGGCAATTCACGAAGGCCATCGAGGTTTATGTCGATTTAAGCGATAAGGTGGTGGGTTTAGGTGTGCGATTGCGCAGGTACTCATTACTGGTGGGCAATGGGGTTGTTAAAATGCTCAATTTAGAGGAAGGCAGGTCGTTTACCTTTAGCGGGGTCGATGATATATTGAAGGTCCTGTGA___GCGTTAGGCTTCAGCGGGTTCTTTTTGCAGCTGCGGGACCTAGGGTTTACGCCTTGACAGCAAACAAGAAGTGCTCTTTTCCCCATTGCATTTGCAAGATTATTGTTATCAATAATGGATTCACAGTAAATCCCCATTGCATTTGGAGGACTACTGTTATCAATGATGGATTCACAGTAAATCGATGACCGATGGTTGAGGTATTATCAACAGGCTTTATTTAGATGCCTGTTTCGCTTGCCCCAGCTTCGATTGTTAGCTTCGATTGTTACAAGAATTGAGTAACCATTATGGAGCTTTGCATTGCTTGAATGTTATTGTTATCAGTGATGGATTCACTCTGAACTGATGGCTGAGTCATTATCAGTAGAATCTATTTAGAAGCTTGTTTCGCCTGCCCCAGATTCGATTAGTATCTTAGGTTTATGGGGATGATTTTTGCAAAGCTGAGGTTGCAACCTTTTCTGATTAATGGAATTTCACGGAGGTTTTCACCTTCATTGGTTGTTGCACCAATGTCT

Fln Alignment:

Contig2458___PQKPADIPIAPTAFKIRAFSIANETIKVGDKLPNATLSYFDREGNFQTVSISELTEGKKIILLAVPGAFTPTCSQKHVPGFIQRADELRAKGVDLIVCIAVNDAFVLKAWADSLGIGGDNSKVLLLSDGNGQFTKAIEVYVDLSDKVVGLGVRLRRYSLLVGNGVVKMLNLEEGRSFTFSGVDDILKVL
A9NN26______________PIKPTFVRSSTTLHTVRA------TISVGDKLPEATLSYFDKEGEIQTIKVSELTKGKKVVLLAVPGAFTPTCSQKHLPGFVEKADELKAKGVDTIACVSVNDAFVMRAWGENLNVG---DKVLLLADGIQEFTKALGVTLDLSDKPVGLGVRSRRYALLAEDGVVKVLNLEEGGAFTVSSAEDILKAL

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
99	75			25	0.996473
113	75			25	0.996473
224	88		11		0.923564
270	37		62		1.0
298		42		57	1.0
325		42		57	1.0
333		42		57	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain