SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2449

Length: 2853 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene2449
GCGAAATAGGTATTATGTCTGGCCCTCCGCTTGTGATCAGGTCATCCACATTTTTTACGTTTTTACGATTTTATGGACATGCTTGGCCAGGCCGGGCCCTCGTAGCAGAGATTTGGATGTGCTGTGTTTACAGGCATTTAGCTAGTATTTTATGTATCTTTACTGTCACAGCTGCCGTGGATTTGACAGCAGTAGCCTTAAAGACCATAGGGTGAAGTCGGTAGTGGGGGCGAAAGATCAAAAGCAGAGCTCGGCAGTTTTTAACATTTCTTGAGCATTGACCGGCATTGACTACTTGAATTTGTTGATCGGTAGCCGAGAAATGCACAAGGATTTAAGTAATAAGGATCAAACTTCCAATCTCCATCTGGGGGAAAACGAAGTTCAGATTGTAAGGAGTATATTGTGTAATCTTACGGATGACAGATAAATCAGTAGTTGTAGTGACCGTCTTCACTGTTTTTCAAGAGATTTAGTATATATTATTATTATTATTACCATTAACAAGGAAGAAAAAGTTTTCTCTGGAATCTGCAGGTTTCTGTAGCTCGTGCTAACATCCAAGATCTCTTCAGATTCAATCATATATTTCTAAAGACAAGTACCGGGTCGCGCCTACTGAAATGCAGAACCCGTTAATAGTTGAAACGAGCTGTGGCTCCTTACTGCAGGAGCTACAGCAAATATGGGACGAAGTAGGAGAAAGTGATGCGGAACGAGATAGGATGTTGCTTCAGTTGGAGCAAGAATGTTTAGATGTCTACAAGCGGAAAGTTGATCAAGCCACCCGCTCAAGGGCTCGATTACTTCAGACCCTGGCTGATTCCAGAGCTGAACTCACCAATCTTCTCTCTGCACTTGGCGAGCACTCTTTTCATGGCCTTCCTGAAAAGCCTACAGGCACCCTGAAGGAACAACTTGCTGCTATTACACCGGCTTTGGAACAGCTTTGGCAGCAAAAGGAAGAGAGGATCAAGCAATTTTTGGATGTTCAAGTACAAATTCAGAGGATTTGCGGAGAAATTGCTGGAAAATTGCAGCTCAATGAAGCTATAACTCCGAAAGTCGATGATCAGGACTTATCATTGAAAAAGTTTGATGAATTTCATCTACAGTTTCAAGAACTTCAAAGAGAAAAGAGTGATCGGCTCCACAAGGTTCTTGAGTACGTTAATACTGTACGTGATCTTTGCGCTGTATTGGGAATGGACTTTTTTAATATCATTACCGAAGTTCATCCTAGCTTAGGCGATTCGGTGGGGATTCAGTCAAAAAGTATTAGCAATGATACCTTGGCCAGGCTAGCCAGAACAGTGCAATCGTTAAAGGAGGAGAAGAAGCAAAGGTTGCAAAAGCTTCAAGAACTAGGGACTTCACTGACAGAATTGTGGAATCTAATGGATACCCCTATGGAAGAACAAAATTTATTTGATCATGTGACTTGCAACATTTCAGCATCTGTGGAGGAGGTCACGGTCCCAGGTGCACTTGCTATTGATATTATCGAACAGGCTGAGGTAGAAGTTGAAAGATTGGATCAGCTAAAGGCTAGTAAAATGAAAGAGCTTGTGCTTAAGAAGCAATTAGAGCTTGAAGAAATATATAGACGGGCCCACATGGAAGTAGATTCTGAGTCTGCGCAAGAGAAATTAATAGCTTTGATTAATTCTGGCAATGTCGATCCTTCGGAGCTGCTAGCTAGCATGGATGACCAGATCTCCAAAGCAAAAGAAGAGGCATTTAGTAGAAAGGAAATAATGGAGAAGGTGGAGAAATGGATGTCGGCTTGTGAAGAAGAAAGCTGGCTTGAAGATTACAGCAGGGATGATAATAGGTACAATTCCAGCAGGGGGGCTCACATTAATCTCAAACGTGCAGAACGAGCTCGAGTAATTGTTAACAAAATTCCTGCTCTTGTGGATTCCTTGATTGCAAAAACAAGGGCTTGGGAGGAGGAAAGGTCGACTACCTTTTTATATGACGCAGTACCCCTCCTGGCGATGTTAGATGAGTACACTATGTTAAGGCATGAAAGAGAAGACGAGAAACGGAGGCTCAGGGATCAAAAACGTTTTCATGAGCAGCTGACAACCGAGCAAGAAACATTGTTTGGTTCAAGGCCAAGTCCCAACAGGCCACAATCTTCAAAGAAGGGTGCAGGCCCTCGTGCAAATGGTAGTAGTTCAGGTGGCACTCCTTTGAATCGACGCCTTTCACTCGGTGTGCAGCAATCTGGAACAAATGGAGTCACACCTGTTAGGCAGGGCATGTCTTCCAGCAAGGAAGGTAAAAGAGAGTTGTCTCGGCCAGTGGCCCCTGTCAATTATGTTTCTCTTCCCAAAGAAGACTCTGTTTCACAAGTTTCTGAGAATGAGTCCACTCCTTCCACCCCATAACTGAATAATGGCGTTGACGATGCTATCTATTATAAAGTTAGCCGTAACTGTTGTTTCTGCTGAACTGACTTTGAAGATAAGAAGATAGGTCAGTATATATTATTGCTGAGAATGCTTGATAATCTATTTGAGATTATCAAGCACTGTTCACAGCTATTTCTCATATCGTGCTTAGAGACAACTACGTGTAAAACATATTTCATTATAGCTATTTCAAATAATGTTGTAGGTTACGGGTTTGGTTCATACCCCTTATTAAAATGACCATGAGTAGCATGTTTCCAGGCTAAACTTATTAACTTTAAGGTGTATAGGTAATTTAAGATTACTCTCATGTAATACAAGTCTCCTCTAATTTTTATTTTTTTATTTTATGGAATGGAGTAACGAGCTCCAATTTCAGGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAGAACCCTGGGTTGATACCCCTGCT

Ace file of the UniGene sp_v3.0_unigene2449 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein regulator of cytokinesis, putative n=1 Tax=Ricinus communis RepID=B9SYY2_RICCO	-	-	0.0	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%
Sma3	Microtubule-associated protein MAP65-1a	-	-	5.822e-27	-

Source	Gene names
Sma3	AT2G01910; AT4g26760; At1g14690; At1g27920; At2g01910; At2g38720; At5g51600; At5g55230; At5g62250; B1377B10.2; F10M23.100; F13K9.3; GSVIVT00002052001; GSVIVT00002822001; GSVIVT00026353001; GSVIVT00027254001; GSVIVT00027255001; GSVIVT00030649001; GSVIVT000

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	spindle	GO:0005819	Cellular Component	-
Sma3	microtubule	GO:0005874	Cellular Component	-
Sma3	phragmoplast	GO:0009524	Cellular Component	-
Sma3	plastid	GO:0009536	Cellular Component	-
Sma3	cortical microtubule, transverse to long axis	GO:0010005	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	microtubule binding	GO:0008017	Molecular Function	-
Sma3	microtubule cytoskeleton organization	GO:0000226	Biological Process	-
Sma3	nuclear division	GO:0000280	Biological Process	-
Sma3	cytokinesis	GO:0000910	Biological Process	-
Sma3	cytokinesis by cell plate formation	GO:0000911	Biological Process	-
Sma3	microtubule bundle formation	GO:0001578	Biological Process	-
Sma3	microtubule nucleation	GO:0007020	Biological Process	-
Sma3	response to nematode	GO:0009624	Biological Process	-
Sma3	positive regulation of microtubule polymerization	GO:0031116	Biological Process	-
Sma3	anaphase	GO:0051322	Biological Process	-
Sma3	formation by symbiont of syncytium involving giant cell for nutrient acquisition from host	GO:0052096	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Domain of unknown function DUF296	IPR005175	-	-
Sma3	Microtubule-associated protein, MAP65/ASE1-type	IPR007145	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G55230.2	MAP65-1 microtubule-associated proteins 65-1 chr5:22402716-22405182 FORWARD LENGTH=616	62%
RefSeq	Arabidopsis thaliana	NP_200334.1	microtubule-associated proteins 65-1 [Arabidopsis thaliana]	65%
RefSeq	Populus trichocarpa	XP_002298820.1	predicted protein [Populus trichocarpa]	67%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AC28

Fln msg:

Fln protein: MQNPLIVETSCGSLLQELQQIWDEVGESDAERDRMLLQLEQECLDVYKRKVDQATRSRARLLQTLADSRAELTNLLSALGEHSFHGLPEKPTGTLKEQLAAITPALEQLWQQKEERIKQFLDVQVQIQRICGEIAGKLQLNEAITPKVDDQDLSLKKFDEFHLQFQELQREKSDRLHKVLEYVNTVRDLCAVLGMDFFNIITEVHPSLGDSVGIQSKSISNDTLARLARTVQSLKEEKKQRLQKLQELGTSLTELWNLMDTPMEEQNLFDHVTCNISASVEEVTVPGALAIDIIEQAEVEVERLDQLKASKMKELVLKKQLELEEIYRRAHMEVDSESAQEKLIALINSGNVDPSELLASMDDQISKAKEEAFSRKEIMEKVEKWMSACEEESWLEDYSRDDNRYNSSRGAHINLKRAERARVIVNKIPALVDSLIAKTRAWEEERSTTFLYDAVPLLAMLDEYTMLRHEREDEKRRLRDQKRFHEQLTTEQETLFGSRPSPNRPQSSKKGAGPRANGSSSGGTPLNRRLSLGVQQSGTNGVTPVRQGMSSSKEGKRELSRPVAPVNYVSLPKEDSVSQVSENESTPSTP*

Protein Length: 592

Fln nts: GCGAAATAGGTATTATGTCTGGCCCTCCGCTTGTGATCAGGTCATCCACATTTTTTACGTTTTTACGATTTTATGGACATGCTTGGCCAGGCCGGGCCCTCGTAGCAGAGATTTGGATGTGCTGTGTTTACAGGCATTTAGCTAGTATTTTATGTATCTTTACTGTCACAGCTGCCGTGGATTTGACAGCAGTAGCCTTAAAGACCATAGGGTGAAGTCGGTAGTGGGGGCGAAAGATCAAAAGCAGAGCTCGGCAGTTTTTAACATTTCTTGAGCATTGACCGGCATTGACTACTTGAATTTGTTGATCGGTAGCCGAGAAATGCACAAGGATTTAAGTAATAAGGATCAAACTTCCAATCTCCATCTGGGGGAAAACGAAGTTCAGATTGTAAGGAGTATATTGTGTAATCTTACGGATGACAGATAAATCAGTAGTTGTAGTGACCGTCTTCACTGTTTTTCAAGAGATTTAGTATATATTATTATTATTATTACCATTAACAAGGAAGAAAAAGTTTTCTCTGGAATCTGCAGGTTTCTGTAGCTCGTGCTAACATCCAAGATCTCTTCAGATTCAATCATATATTTCTAAAGACAAGTACCGGGTCGCGCCTACTGAA_-_ATGCAGAACCCGTTAATAGTTGAAACGAGCTGTGGCTCCTTACTGCAGGAGCTACAGCAAATATGGGACGAAGTAGGAGAAAGTGATGCGGAACGAGATAGGATGTTGCTTCAGTTGGAGCAAGAATGTTTAGATGTCTACAAGCGGAAAGTTGATCAAGCCACCCGCTCAAGGGCTCGATTACTTCAGACCCTGGCTGATTCCAGAGCTGAACTCACCAATCTTCTCTCTGCACTTGGCGAGCACTCTTTTCATGGCCTTCCTGAAAAGCCTACAGGCACCCTGAAGGAACAACTTGCTGCTATTACACCGGCTTTGGAACAGCTTTGGCAGCAAAAGGAAGAGAGGATCAAGCAATTTTTGGATGTTCAAGTACAAATTCAGAGGATTTGCGGAGAAATTGCTGGAAAATTGCAGCTCAATGAAGCTATAACTCCGAAAGTCGATGATCAGGACTTATCATTGAAAAAGTTTGATGAATTTCATCTACAGTTTCAAGAACTTCAAAGAGAAAAGAGTGATCGGCTCCACAAGGTTCTTGAGTACGTTAATACTGTACGTGATCTTTGCGCTGTATTGGGAATGGACTTTTTTAATATCATTACCGAAGTTCATCCTAGCTTAGGCGATTCGGTGGGGATTCAGTCAAAAAGTATTAGCAATGATACCTTGGCCAGGCTAGCCAGAACAGTGCAATCGTTAAAGGAGGAGAAGAAGCAAAGGTTGCAAAAGCTTCAAGAACTAGGGACTTCACTGACAGAATTGTGGAATCTAATGGATACCCCTATGGAAGAACAAAATTTATTTGATCATGTGACTTGCAACATTTCAGCATCTGTGGAGGAGGTCACGGTCCCAGGTGCACTTGCTATTGATATTATCGAACAGGCTGAGGTAGAAGTTGAAAGATTGGATCAGCTAAAGGCTAGTAAAATGAAAGAGCTTGTGCTTAAGAAGCAATTAGAGCTTGAAGAAATATATAGACGGGCCCACATGGAAGTAGATTCTGAGTCTGCGCAAGAGAAATTAATAGCTTTGATTAATTCTGGCAATGTCGATCCTTCGGAGCTGCTAGCTAGCATGGATGACCAGATCTCCAAAGCAAAAGAAGAGGCATTTAGTAGAAAGGAAATAATGGAGAAGGTGGAGAAATGGATGTCGGCTTGTGAAGAAGAAAGCTGGCTTGAAGATTACAGCAGGGATGATAATAGGTACAATTCCAGCAGGGGGGCTCACATTAATCTCAAACGTGCAGAACGAGCTCGAGTAATTGTTAACAAAATTCCTGCTCTTGTGGATTCCTTGATTGCAAAAACAAGGGCTTGGGAGGAGGAAAGGTCGACTACCTTTTTATATGACGCAGTACCCCTCCTGGCGATGTTAGATGAGTACACTATGTTAAGGCATGAAAGAGAAGACGAGAAACGGAGGCTCAGGGATCAAAAACGTTTTCATGAGCAGCTGACAACCGAGCAAGAAACATTGTTTGGTTCAAGGCCAAGTCCCAACAGGCCACAATCTTCAAAGAAGGGTGCAGGCCCTCGTGCAAATGGTAGTAGTTCAGGTGGCACTCCTTTGAATCGACGCCTTTCACTCGGTGTGCAGCAATCTGGAACAAATGGAGTCACACCTGTTAGGCAGGGCATGTCTTCCAGCAAGGAAGGTAAAAGAGAGTTGTCTCGGCCAGTGGCCCCTGTCAATTATGTTTCTCTTCCCAAAGAAGACTCTGTTTCACAAGTTTCTGAGAATGAGTCCACTCCTTCCACCCCATAA___CTGAATAATGGCGTTGACGATGCTATCTATTATAAAGTTAGCCGTAACTGTTGTTTCTGCTGAACTGACTTTGAAGATAAGAAGATAGGTCAGTATATATTATTGCTGAGAATGCTTGATAATCTATTTGAGATTATCAAGCACTGTTCACAGCTATTTCTCATATCGTGCTTAGAGACAACTACGTGTAAAACATATTTCATTATAGCTATTTCAAATAATGTTGTAGGTTACGGGTTTGGTTCATACCCCTTATTAAAATGACCATGAGTAGCATGTTTCCAGGCTAAACTTATTAACTTTAAGGTGTATAGGTAATTTAAGATTACTCTCATGTAATACAAGTCTCCTCTAATTTTTATTTTTTTATTTTATGGAATGGAGTAACGAGCTCCAATTTCAGGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAGAACCCTGGGTTGATACCCCTGCT

Fln Alignment:

Contig2449___VAPTEMQNPLIVETSCGSLLQELQQIWDEVGESDAERDRMLLQLEQECLDVYKRKVDQATRSRARLLQTLADSRAELTNLLSALGEHSFHGLPEKPTGTLKEQLAAITPALEQLWQQKEERIKQFLDVQVQIQRICGEIAGKLQLNE-AITPKVDDQDLSLKKFDEFHLQFQELQREKSDRLHKVLEYVNTVRDLCAVLGMDFFNIITEVHPSLGDSVGIQSKSISNDTLARLARTVXXXXXXXXXXXXXXXXLGTSLTELWNLMDTPMEEQNLFDHVTCNISASVEEVTVPGALAIDIIEQAEVEVERLDQLKASXXXXXXXXXXXXXXEIYRRAHMEVDSESAQEKLIALINSGNVDPSELLASMDDQISKAKEEAFSRKEIMEKVEKWMSACEEESWLEDYSRDDNRYNSSRGAHINLKRAERARVIVNKIPALVDSLIAKTRAWEEERSTTFLYDAVPLLAMLDEYTMLRHEREDEKRRLRDQKRFHEQLTTEQETLFGSRPSPNRPQSSKKGAGPRANGSSSGGTPLNRRLSLGVQQSGTNGVTPVRQGMSSSKEGKRELSRPVAPVNYVSLPKEDSVSQVSENESTPSTP
D5AC28______________MATKKLQRPMFSDTNCGSLLQDLELIWDEVGASDGEREKMLLQLEQECLEVYRRKVDQANLSRARLHQLLADSEAELEHLISALGERSFVGRPEKQTGTLKEQLAAIAPALGDLRKKKEERVKKFMDVQVQIQSICAEIAGNLNVNDLCTTPKVDEHDLSLKKLDEFHDQLQELHREKNDRLQKVFDYVNTVHALSAVMGLDFSKIVSEVHPSLDDSAGNQSKSISNDTLAKLAETVESLKEEKQRRLQKIQELGTTLIELWNLMDITMGEQKHFDHVTCYISASVDEVSMPRALASNIIDQAEVEVKRLDRLKAGKMKQLLHKKQTELEEIYRKAHMEIDTNSAQEKIMAMIDSGTINHSDLLASMDDQIAKAKEEALSRKEIMEKVDKWMAACEEESWLEDYNRDENRYSVSRGAHINLKRAERARVIVNKIPALVDSLMGKTRAWEEERGTTFFYDEVPLLAMLDEYNMMRQEREEEKLRLRDKKRLQGQLANEPEPIFVAKPTPHRQLSTKRSTGLRANGNSVDATPLNRRLSLGVQQTGMNGVNPARQGLSVQRDGKREHNRSMIPRNYFSLSKEDSASQPSANGSTVSSP

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
319		25		75	0.996473
437		25	66		1.0
666	90	9			0.999872
806		10	90		0.90298
808		10		90	0.90298
809	10			90	0.90298
810	10	90			0.90298
855		75		25	1.0
1082	16			83	0.994512
1083	16	83			0.994512
1085		83	16		0.994512
1086		83		16	0.994512
1154	12			87	0.992554
1156			87	12	0.992554
1157		87	12		0.992554
1215		20	80		0.999996
1230		20		80	0.999996
1231	90	10			0.90298
1232	10	90			0.90298
1233	10			90	0.90298
1234	10			90	0.90298
1235	11	88			0.923564
2321		90	10		0.90298
2327	11	88			0.923564
2330			88	11	0.923564
2331	83			16	0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
2357	2373	TAA TAA TAA TAA TAA TA	17

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain